PDB Short entry for 3U3S HEADER APOPTOSIS 06-OCT-11 3U3S TITLE THE S-SAD PHASED CRYSTAL STRUCTURE OF THE ECTO-DOMAIN OF DEATH TITLE 2 RECEPTOR 6 (DR6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 21; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYSTEINE RICH DOMAIN; COMPND 5 SYNONYM: DEATH RECEPTOR 6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFRSF21, DR6, UNQ437/PRO868; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIGGER APOPTOSIS, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR H.RU,L.X.ZHAO,W.DING,L.Y.JIAO,N.SHAW,L.G.ZHANG,L.W.HUNG,N.MATSUGAKI, AUTHOR 2 S.WAKATSUKI,Z.J.LIU REVDAT 2 10-JUL-13 3U3S 1 JRNL REVDAT 1 02-MAY-12 3U3S 0 JRNL AUTH H.RU,L.ZHAO,W.DING,L.JIAO,N.SHAW,W.LIANG,L.ZHANG,L.W.HUNG, JRNL AUTH 2 N.MATSUGAKI,S.WAKATSUKI,Z.J.LIU JRNL TITL S-SAD PHASING STUDY OF DEATH RECEPTOR 6 AND ITS SOLUTION JRNL TITL 2 CONFORMATION REVEALED BY SAXS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 521 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22525750 JRNL DOI 10.1107/S0907444912004490 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 469 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1269 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1733 ; 2.029 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 165 ; 7.803 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;35.005 ;23.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 209 ;20.717 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 198 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 943 ; 0.009 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3U3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-11. REMARK 100 THE RCSB ID CODE IS RCSB068269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.0-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9308 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 CITRATE TRIBASIC DEHYDRATE (PH5.0-6.0), 25-30% PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.53333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.40000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 155.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.13333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.26667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 124.53333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 155.66667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.40000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 31.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -116.51100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 201.80297 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 31.13333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 406 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 42 REMARK 465 PRO A 43 REMARK 465 GLU A 44 REMARK 465 GLN A 45 REMARK 465 LYS A 46 REMARK 465 ALA A 47 REMARK 465 SER A 48 REMARK 465 ASN A 49 REMARK 465 LEU A 50 REMARK 465 PRO A 215 REMARK 465 SER A 216 REMARK 465 PHE A 217 REMARK 465 SER A 218 REMARK 465 SER A 219 REMARK 465 SER A 220 REMARK 465 THR A 221 REMARK 465 SER A 222 REMARK 465 PRO A 223 REMARK 465 SER A 224 REMARK 465 PRO A 225 REMARK 465 GLY A 226 REMARK 465 THR A 227 REMARK 465 ALA A 228 REMARK 465 ILE A 229 REMARK 465 PHE A 230 REMARK 465 PRO A 231 REMARK 465 ARG A 232 REMARK 465 PRO A 233 REMARK 465 GLU A 234 REMARK 465 HIS A 235 REMARK 465 MET A 236 REMARK 465 GLU A 237 REMARK 465 THR A 238 REMARK 465 HIS A 239 REMARK 465 GLU A 240 REMARK 465 VAL A 241 REMARK 465 PRO A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 THR A 245 REMARK 465 TYR A 246 REMARK 465 VAL A 247 REMARK 465 PRO A 248 REMARK 465 LYS A 249 REMARK 465 GLY A 250 REMARK 465 MET A 251 REMARK 465 ASN A 252 REMARK 465 SER A 253 REMARK 465 THR A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 ASN A 257 REMARK 465 SER A 258 REMARK 465 SER A 259 REMARK 465 ALA A 260 REMARK 465 SER A 261 REMARK 465 VAL A 262 REMARK 465 ARG A 263 REMARK 465 PRO A 264 REMARK 465 LYS A 265 REMARK 465 VAL A 266 REMARK 465 LEU A 267 REMARK 465 SER A 268 REMARK 465 SER A 269 REMARK 465 ILE A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLY A 273 REMARK 465 THR A 274 REMARK 465 VAL A 275 REMARK 465 PRO A 276 REMARK 465 ASP A 277 REMARK 465 ASN A 278 REMARK 465 THR A 279 REMARK 465 SER A 280 REMARK 465 SER A 281 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 465 GLY A 284 REMARK 465 LYS A 285 REMARK 465 GLU A 286 REMARK 465 ASP A 287 REMARK 465 VAL A 288 REMARK 465 ASN A 289 REMARK 465 LYS A 290 REMARK 465 THR A 291 REMARK 465 LEU A 292 REMARK 465 PRO A 293 REMARK 465 ASN A 294 REMARK 465 LEU A 295 REMARK 465 GLN A 296 REMARK 465 VAL A 297 REMARK 465 VAL A 298 REMARK 465 ASN A 299 REMARK 465 HIS A 300 REMARK 465 GLN A 301 REMARK 465 GLN A 302 REMARK 465 GLY A 303 REMARK 465 PRO A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 ARG A 307 REMARK 465 HIS A 308 REMARK 465 ILE A 309 REMARK 465 LEU A 310 REMARK 465 LYS A 311 REMARK 465 LEU A 312 REMARK 465 LEU A 313 REMARK 465 PRO A 314 REMARK 465 SER A 315 REMARK 465 MET A 316 REMARK 465 GLU A 317 REMARK 465 ALA A 318 REMARK 465 THR A 319 REMARK 465 GLY A 320 REMARK 465 GLY A 321 REMARK 465 GLU A 322 REMARK 465 LYS A 323 REMARK 465 SER A 324 REMARK 465 SER A 325 REMARK 465 THR A 326 REMARK 465 PRO A 327 REMARK 465 ILE A 328 REMARK 465 LYS A 329 REMARK 465 GLY A 330 REMARK 465 PRO A 331 REMARK 465 LYS A 332 REMARK 465 ARG A 333 REMARK 465 GLY A 334 REMARK 465 HIS A 335 REMARK 465 PRO A 336 REMARK 465 ARG A 337 REMARK 465 GLN A 338 REMARK 465 ASN A 339 REMARK 465 LEU A 340 REMARK 465 HIS A 341 REMARK 465 LYS A 342 REMARK 465 HIS A 343 REMARK 465 PHE A 344 REMARK 465 ASP A 345 REMARK 465 ILE A 346 REMARK 465 ASN A 347 REMARK 465 GLU A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 468 O HOH A 478 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 56 CG HIS A 56 CD2 0.061 REMARK 500 HIS A 107 CG HIS A 107 CD2 0.062 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 126 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 112 150.08 -44.59 REMARK 500 ALA A 125 -34.80 -35.11 REMARK 500 ASN A 141 -109.63 48.83 REMARK 500 THR A 143 -150.72 -132.64 REMARK 500 VAL A 183 -34.24 -131.51 REMARK 500 LEU A 193 -77.87 -52.28 REMARK 500 SER A 194 35.06 -59.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U3P RELATED DB: PDB REMARK 900 RELATED ID: 3U3Q RELATED DB: PDB REMARK 900 RELATED ID: 3U3T RELATED DB: PDB REMARK 900 RELATED ID: 3U3V RELATED DB: PDB DBREF 3U3S A 42 348 UNP O75509 TNR21_HUMAN 42 348 SEQADV 3U3S HIS A 349 UNP O75509 EXPRESSION TAG SEQADV 3U3S HIS A 350 UNP O75509 EXPRESSION TAG SEQADV 3U3S HIS A 351 UNP O75509 EXPRESSION TAG SEQADV 3U3S HIS A 352 UNP O75509 EXPRESSION TAG SEQADV 3U3S HIS A 353 UNP O75509 EXPRESSION TAG SEQADV 3U3S HIS A 354 UNP O75509 EXPRESSION TAG SEQRES 1 A 313 GLN PRO GLU GLN LYS ALA SER ASN LEU ILE GLY THR TYR SEQRES 2 A 313 ARG HIS VAL ASP ARG ALA THR GLY GLN VAL LEU THR CYS SEQRES 3 A 313 ASP LYS CYS PRO ALA GLY THR TYR VAL SER GLU HIS CYS SEQRES 4 A 313 THR ASN THR SER LEU ARG VAL CYS SER SER CYS PRO VAL SEQRES 5 A 313 GLY THR PHE THR ARG HIS GLU ASN GLY ILE GLU LYS CYS SEQRES 6 A 313 HIS ASP CYS SER GLN PRO CYS PRO TRP PRO MET ILE GLU SEQRES 7 A 313 LYS LEU PRO CYS ALA ALA LEU THR ASP ARG GLU CYS THR SEQRES 8 A 313 CYS PRO PRO GLY MET PHE GLN SER ASN ALA THR CYS ALA SEQRES 9 A 313 PRO HIS THR VAL CYS PRO VAL GLY TRP GLY VAL ARG LYS SEQRES 10 A 313 LYS GLY THR GLU THR GLU ASP VAL ARG CYS LYS GLN CYS SEQRES 11 A 313 ALA ARG GLY THR PHE SER ASP VAL PRO SER SER VAL MET SEQRES 12 A 313 LYS CYS LYS ALA TYR THR ASP CYS LEU SER GLN ASN LEU SEQRES 13 A 313 VAL VAL ILE LYS PRO GLY THR LYS GLU THR ASP ASN VAL SEQRES 14 A 313 CYS GLY THR LEU PRO SER PHE SER SER SER THR SER PRO SEQRES 15 A 313 SER PRO GLY THR ALA ILE PHE PRO ARG PRO GLU HIS MET SEQRES 16 A 313 GLU THR HIS GLU VAL PRO SER SER THR TYR VAL PRO LYS SEQRES 17 A 313 GLY MET ASN SER THR GLU SER ASN SER SER ALA SER VAL SEQRES 18 A 313 ARG PRO LYS VAL LEU SER SER ILE GLN GLU GLY THR VAL SEQRES 19 A 313 PRO ASP ASN THR SER SER ALA ARG GLY LYS GLU ASP VAL SEQRES 20 A 313 ASN LYS THR LEU PRO ASN LEU GLN VAL VAL ASN HIS GLN SEQRES 21 A 313 GLN GLY PRO HIS HIS ARG HIS ILE LEU LYS LEU LEU PRO SEQRES 22 A 313 SER MET GLU ALA THR GLY GLY GLU LYS SER SER THR PRO SEQRES 23 A 313 ILE LYS GLY PRO LYS ARG GLY HIS PRO ARG GLN ASN LEU SEQRES 24 A 313 HIS LYS HIS PHE ASP ILE ASN GLU HIS HIS HIS HIS HIS SEQRES 25 A 313 HIS FORMUL 2 HOH *142(H2 O) HELIX 1 1 CYS A 192 ASN A 196 5 5 SHEET 1 A 2 THR A 53 VAL A 57 0 SHEET 2 A 2 VAL A 64 ASP A 68 -1 O CYS A 67 N TYR A 54 SHEET 1 B 2 THR A 74 GLU A 78 0 SHEET 2 B 2 VAL A 87 SER A 90 -1 O VAL A 87 N GLU A 78 SHEET 1 C 2 THR A 95 PHE A 96 0 SHEET 2 C 2 HIS A 107 ASP A 108 -1 O HIS A 107 N PHE A 96 SHEET 1 D 2 ILE A 118 LEU A 121 0 SHEET 2 D 2 GLU A 130 THR A 132 -1 O THR A 132 N ILE A 118 SHEET 1 E 2 MET A 137 SER A 140 0 SHEET 2 E 2 THR A 143 PRO A 146 -1 O THR A 143 N SER A 140 SHEET 1 F 2 TRP A 154 LYS A 158 0 SHEET 2 F 2 ARG A 167 GLN A 170 -1 O ARG A 167 N ARG A 157 SHEET 1 G 2 THR A 175 PHE A 176 0 SHEET 2 G 2 LYS A 187 ALA A 188 -1 O LYS A 187 N PHE A 176 SHEET 1 H 2 VAL A 198 LYS A 201 0 SHEET 2 H 2 VAL A 210 GLY A 212 -1 O GLY A 212 N VAL A 198 SSBOND 1 CYS A 67 CYS A 80 1555 1555 2.11 SSBOND 2 CYS A 70 CYS A 88 1555 1555 2.07 SSBOND 3 CYS A 91 CYS A 106 1555 1555 2.09 SSBOND 4 CYS A 109 CYS A 123 1555 1555 2.06 SSBOND 5 CYS A 113 CYS A 131 1555 1555 2.03 SSBOND 6 CYS A 133 CYS A 144 1555 1555 2.11 SSBOND 7 CYS A 150 CYS A 168 1555 1555 2.10 SSBOND 8 CYS A 171 CYS A 186 1555 1555 2.14 SSBOND 9 CYS A 192 CYS A 211 1555 1555 2.03 CISPEP 1 TRP A 115 PRO A 116 0 2.86 CRYST1 77.674 77.674 186.800 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012874 0.007433 0.000000 0.00000 SCALE2 0.000000 0.014866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005353 0.00000