PDB Short entry for 3U4X HEADER CARBOHYDRATE-BINDING PROTEIN 10-OCT-11 3U4X TITLE CRYSTAL STRUCTURE OF A LECTIN FROM CAMPTOSEMA PEDICELLATUM SEEDS IN TITLE 2 COMPLEX WITH 5-BROMO-4-CHLORO-3-INDOLYL-ALPHA-D-MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMPTOSEMA PEDICELLATUM LECTIN (CPL); COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPTOSEMA PEDICELLATUM; SOURCE 3 ORGANISM_TAXID: 232302; SOURCE 4 OTHER_DETAILS: SEEDS KEYWDS JELLY-ROLL DOMAIN, LECTIN, CARBOHYDRATE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.A.M.ROCHA,C.S.TEIXEIRA,T.R.MOURA,H.C.SILVA,F.N.PEREIRA-JUNIOR, AUTHOR 2 C.S.NAGANO,P.DELATORRE,B.S.CAVADA REVDAT 3 28-FEB-24 3U4X 1 HETSYN REVDAT 2 29-JUL-20 3U4X 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 12-SEP-12 3U4X 0 JRNL AUTH C.SOUZA TEIXEIRA,H.COLARES DA SILVA,T.ROCHA DE MOURA, JRNL AUTH 2 F.N.PEREIRA-JUNIOR,K.SANTIAGO DO NASCIMENTO, JRNL AUTH 3 C.SHINITI NAGANO,A.HOLANDA SAMPAIO,P.DELATORRE, JRNL AUTH 4 B.A.MATIAS ROCHA,B.SOUSA CAVADA JRNL TITL CRYSTAL STRUCTURE OF THE LECTIN OF CAMPTOSEMA PEDICELLATUM: JRNL TITL 2 IMPLICATIONS OF A CONSERVATIVE SUBSTITUTION AT THE JRNL TITL 3 HYDROPHOBIC SUBSITE. JRNL REF J.BIOCHEM. V. 152 87 2012 JRNL REFN ISSN 0021-924X JRNL PMID 22554687 JRNL DOI 10.1093/JB/MVS047 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 11436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 636 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.149 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1852 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2534 ; 1.924 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 9.533 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;39.286 ;24.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 271 ;15.440 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.129 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 292 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1419 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1174 ; 1.075 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1899 ; 1.894 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 678 ; 2.670 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 635 ; 4.087 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.944 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.056 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.42 REMARK 200 MONOCHROMATOR : ELASTICALLY BENT SILICON SINGLE REMARK 200 CRYSTAL MONOCHROMATOR, REMARK 200 ASYMMETRIC ANGLE 7.25, CONDENSED REMARK 200 MODE, X-RAY ENERGY PHOTONS - 6 REMARK 200 KEV-12 KEV (1 -2 A). REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 21.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : 0.14700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, AMMONIUM SULFATE, PEG 400, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.85000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.85000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.97000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.39000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.85000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.97000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.39000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -66.78000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -66.78000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASN A 118 O HOH A 291 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 43.79 -76.87 REMARK 500 ASN A 104 66.67 -110.48 REMARK 500 SER A 119 42.96 -91.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 119 THR A 120 -57.54 REMARK 500 ASN A 131 GLN A 132 146.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 238 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD1 95.4 REMARK 620 3 ASP A 19 OD1 168.0 96.6 REMARK 620 4 HIS A 24 NE2 80.6 91.0 100.1 REMARK 620 5 HOH A 249 O 92.7 95.0 85.2 171.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 237 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 50.9 REMARK 620 3 TYR A 12 O 114.3 75.0 REMARK 620 4 ASN A 14 OD1 157.3 151.2 80.0 REMARK 620 5 ASP A 19 OD2 75.2 101.4 83.7 89.7 REMARK 620 6 HOH A 241 O 106.3 77.1 92.3 89.9 175.9 REMARK 620 7 HOH A 252 O 72.5 114.9 169.5 91.2 90.7 93.3 REMARK 620 N 1 2 3 4 5 6 DBREF 3U4X A 1 236 PDB 3U4X 3U4X 1 236 SEQRES 1 A 236 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 236 ASN THR ASP ILE GLY ASP PRO ASN TYR GLN HIS ILE GLY SEQRES 3 A 236 ILE ASN ILE LYS SER ILE ARG SER LYS ALA THR THR ARG SEQRES 4 A 236 TRP ASN VAL GLN ASP GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 236 SER TYR ASN SER VAL ALA LYS ARG LEU SER ALA ILE VAL SEQRES 6 A 236 SER TYR PRO GLY GLY SER SER ALA THR VAL SER TYR ASP SEQRES 7 A 236 VAL ASP LEU ASN ASN ILE LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 236 GLY LEU SER ALA SER THR GLY VAL TYR LYS GLU THR ASN SEQRES 9 A 236 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS THR SEQRES 10 A 236 ASN SER THR ALA ASP ALA GLN SER LEU HIS PHE THR PHE SEQRES 11 A 236 ASN GLN PHE SER GLN SER PRO LYS ASP LEU ILE LEU GLN SEQRES 12 A 236 GLY ASP ALA SER THR ASP SER ASP GLY ASN LEU GLN LEU SEQRES 13 A 236 THR ARG VAL SER ASN GLY SER PRO GLN SER ASN SER VAL SEQRES 14 A 236 GLY ARG ALA LEU TYR TYR ALA PRO VAL HIS VAL TRP ASP SEQRES 15 A 236 LYS SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE THR SEQRES 16 A 236 PHE LEU ILE LYS SER PRO ASP SER ASP PRO ALA ASP GLY SEQRES 17 A 236 ILE ALA PHE PHE ILE ALA ASN THR ASP SER SER ILE PRO SEQRES 18 A 236 HIS GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO ASP SEQRES 19 A 236 ALA ASN HET CA A 237 1 HET MN A 238 1 HET XMM A 239 23 HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION HETNAM XMM 5-BROMO-4-CHLORO-1H-INDOL-3-YL ALPHA-D-MANNOPYRANOSIDE HETSYN XMM (2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)- HETSYN 2 XMM TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL; (5- HETSYN 3 XMM BROMO-4-CHLORO-3-INDOLYL)-ALPHA-D-MANNOSE; 5-BROMO-4- HETSYN 4 XMM CHLORO-1H-INDOL-3-YL ALPHA-D-MANNOSIDE; 5-BROMO-4- HETSYN 5 XMM CHLORO-1H-INDOL-3-YL D-MANNOSIDE; 5-BROMO-4-CHLORO-1H- HETSYN 6 XMM INDOL-3-YL MANNOSIDE FORMUL 2 CA CA 2+ FORMUL 3 MN MN 2+ FORMUL 4 XMM C14 H15 BR CL N O6 FORMUL 5 HOH *77(H2 O) HELIX 1 1 ASN A 14 GLY A 18 5 5 HELIX 2 2 ASP A 80 ILE A 84 5 5 HELIX 3 3 GLY A 225 LEU A 229 5 5 SHEET 1 A 7 ALA A 36 ARG A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 27 O ALA A 36 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N ASP A 10 O HIS A 24 SHEET 4 A 7 GLY A 208 ASN A 215 -1 O ILE A 209 N LEU A 9 SHEET 5 A 7 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 210 SHEET 6 A 7 VAL A 169 TYR A 174 -1 O GLY A 170 N ALA A 95 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N GLN A 143 O ARG A 171 SHEET 1 B 6 ALA A 36 ARG A 39 0 SHEET 2 B 6 HIS A 24 ILE A 29 -1 N ILE A 27 O ALA A 36 SHEET 3 B 6 ILE A 4 ASP A 10 -1 N ASP A 10 O HIS A 24 SHEET 4 B 6 GLY A 208 ASN A 215 -1 O ILE A 209 N LEU A 9 SHEET 5 B 6 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 210 SHEET 6 B 6 VAL A 178 HIS A 179 -1 O VAL A 178 N VAL A 89 SHEET 1 C 6 ALA A 73 ASP A 78 0 SHEET 2 C 6 ARG A 60 SER A 66 -1 N ALA A 63 O VAL A 75 SHEET 3 C 6 VAL A 47 ASN A 55 -1 N HIS A 51 O ILE A 64 SHEET 4 C 6 ALA A 185 LEU A 197 -1 O PHE A 194 N ALA A 50 SHEET 5 C 6 THR A 105 THR A 117 -1 N SER A 110 O THR A 193 SHEET 6 C 6 GLN A 124 PHE A 130 -1 O LEU A 126 N SER A 113 SHEET 1 D 7 ALA A 73 ASP A 78 0 SHEET 2 D 7 ARG A 60 SER A 66 -1 N ALA A 63 O VAL A 75 SHEET 3 D 7 VAL A 47 ASN A 55 -1 N HIS A 51 O ILE A 64 SHEET 4 D 7 ALA A 185 LEU A 197 -1 O PHE A 194 N ALA A 50 SHEET 5 D 7 THR A 105 THR A 117 -1 N SER A 110 O THR A 193 SHEET 6 D 7 LEU A 154 GLN A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 D 7 SER A 147 THR A 148 -1 N SER A 147 O GLN A 155 SHEET 1 E 2 VAL A 159 SER A 160 0 SHEET 2 E 2 SER A 163 PRO A 164 -1 O SER A 163 N SER A 160 LINK OE2 GLU A 8 MN MN A 238 1555 1555 2.13 LINK OD1 ASP A 10 CA CA A 237 1555 1555 2.49 LINK OD2 ASP A 10 CA CA A 237 1555 1555 2.55 LINK OD1 ASP A 10 MN MN A 238 1555 1555 2.12 LINK O TYR A 12 CA CA A 237 1555 1555 2.42 LINK OD1 ASN A 14 CA CA A 237 1555 1555 2.42 LINK OD2 ASP A 19 CA CA A 237 1555 1555 2.25 LINK OD1 ASP A 19 MN MN A 238 1555 1555 2.24 LINK NE2 HIS A 24 MN MN A 238 1555 1555 2.14 LINK CA CA A 237 O HOH A 241 1555 1555 2.44 LINK CA CA A 237 O HOH A 252 1555 1555 2.33 LINK MN MN A 238 O HOH A 249 1555 1555 2.18 CISPEP 1 ALA A 206 ASP A 207 0 -4.65 CRYST1 65.940 66.780 107.700 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009285 0.00000