PDB Short entry for 3U78
HEADER    OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 13-OCT-11   3U78              
TITLE     E67-2 SELECTIVELY INHIBITS KIAA1718, A HUMAN HISTONE H3 LYSINE 9      
TITLE    2 JUMONJI DEMETHYLASE                                                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 7;                             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: JUMONJI DOMAIN (UNP RESIDUES 92-488);                      
COMPND   5 SYNONYM: KIAA1718, JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION      
COMPND   6 PROTEIN 1D;                                                          
COMPND   7 EC: 1.14.11.-;                                                       
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: JHDM1D, KDM7, KIAA1718;                                        
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    EPIGENETICS, HISTONE LYSINE DEMETHYLATION, BIX ANALOGS,               
KEYWDS   2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX                      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.K.UPADHYAY,X.CHENG                                                  
REVDAT   2   22-FEB-12 3U78    1       JRNL                                     
REVDAT   1   25-JAN-12 3U78    0                                                
JRNL        AUTH   A.K.UPADHYAY,D.ROTILI,J.W.HAN,R.HU,Y.CHANG,D.LABELLA,        
JRNL        AUTH 2 X.ZHANG,Y.S.YOON,A.MAI,X.CHENG                               
JRNL        TITL   AN ANALOG OF BIX-01294 SELECTIVELY INHIBITS A FAMILY OF      
JRNL        TITL 2 HISTONE H3 LYSINE 9 JUMONJI DEMETHYLASES.                    
JRNL        REF    J.MOL.BIOL.                   V. 416   319 2012              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   22227394                                                     
JRNL        DOI    10.1016/J.JMB.2011.12.036                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.69 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.6.1_336)                    
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN             
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-                     
REMARK   3               : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO,              
REMARK   3               : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL            
REMARK   3               : MORIARTY,REETAL PAI,RANDY READ,JANE                  
REMARK   3               : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM             
REMARK   3               : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH,             
REMARK   3               : LAURENT STORONI,TOM TERWILLIGER,PETER                
REMARK   3               : ZWART                                                
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 26.59                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.080                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 95.3                           
REMARK   3   NUMBER OF REFLECTIONS             : 14472                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.205                           
REMARK   3   R VALUE            (WORKING SET) : 0.198                           
REMARK   3   FREE R VALUE                     : 0.265                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.010                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 1448                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 26.5943 -  5.7764    0.98     1508   168  0.2007 0.2354        
REMARK   3     2  5.7764 -  4.5926    0.98     1378   154  0.1612 0.2213        
REMARK   3     3  4.5926 -  4.0143    0.99     1361   151  0.1583 0.2097        
REMARK   3     4  4.0143 -  3.6483    0.99     1351   149  0.1891 0.2853        
REMARK   3     5  3.6483 -  3.3873    0.98     1316   147  0.1912 0.2883        
REMARK   3     6  3.3873 -  3.1880    0.96     1286   143  0.2186 0.2823        
REMARK   3     7  3.1880 -  3.0286    0.95     1275   142  0.2126 0.2912        
REMARK   3     8  3.0286 -  2.8969    0.92     1227   136  0.2287 0.3013        
REMARK   3     9  2.8969 -  2.7855    0.91     1186   132  0.2380 0.3598        
REMARK   3    10  2.7855 -  2.6890    0.86     1136   126  0.2136 0.2919        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.32                                          
REMARK   3   B_SOL              : 41.32                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.420            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.370           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 48.26                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 8.01840                                              
REMARK   3    B22 (A**2) : 8.01840                                              
REMARK   3    B33 (A**2) : -16.03680                                            
REMARK   3    B12 (A**2) : -0.00000                                             
REMARK   3    B13 (A**2) : -0.00000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.008           3067                                  
REMARK   3   ANGLE     :  1.195           4156                                  
REMARK   3   CHIRALITY :  0.080            451                                  
REMARK   3   PLANARITY :  0.006            523                                  
REMARK   3   DIHEDRAL  : 16.359           1125                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3U78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-11.                  
REMARK 100 THE RCSB ID CODE IS RCSB068393.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 25-APR-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.4                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 22-BM                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.00000                            
REMARK 200  MONOCHROMATOR                  : ROSENBAUM-ROCK DOUBLE-CRYSTAL      
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 14476                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.689                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 26.593                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 18.700                             
REMARK 200  R MERGE                    (I) : 0.12400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 25.5000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.89                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 19.40                              
REMARK 200  R MERGE FOR SHELL          (I) : 0.70800                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 5.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHENIX                                                
REMARK 200 STARTING MODEL: PDB ENTRY 3KVA                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 54.75                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% V/V PEG5000 MME, 0.2 M CALCIUM    
REMARK 280  CHLORIDE, 0.1 M BIS-TRIS, PH 6.4, VAPOR DIFFUSION, HANGING DROP,    
REMARK 280  TEMPERATURE 290K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+5/6                                            
REMARK 290       6555   X-Y,X,Z+1/6                                             
REMARK 290       7555   Y,X,-Z+1/3                                              
REMARK 290       8555   X-Y,-Y,-Z                                               
REMARK 290       9555   -X,-X+Y,-Z+2/3                                          
REMARK 290      10555   -Y,-X,-Z+5/6                                            
REMARK 290      11555   -X+Y,Y,-Z+1/2                                           
REMARK 290      12555   X,X-Y,-Z+1/6                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       96.56167            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000      193.12333            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000      144.84250            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000      241.40417            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       48.28083            
REMARK 290   SMTRY1   7 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   7  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       96.56167            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   9 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   9 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   9  0.000000  0.000000 -1.000000      193.12333            
REMARK 290   SMTRY1  10  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  10 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  10  0.000000  0.000000 -1.000000      241.40417            
REMARK 290   SMTRY1  11 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2  11  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3  11  0.000000  0.000000 -1.000000      144.84250            
REMARK 290   SMTRY1  12  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  12  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  12  0.000000  0.000000 -1.000000       48.28083            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A 809  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     SER A    92                                                      
REMARK 465     LEU A    93                                                      
REMARK 465     MET A    94                                                      
REMARK 465     LYS A    95                                                      
REMARK 465     LYS A    96                                                      
REMARK 465     ARG A    97                                                      
REMARK 465     ARG A    98                                                      
REMARK 465     ASN A    99                                                      
REMARK 465     TRP A   100                                                      
REMARK 465     HIS A   101                                                      
REMARK 465     ARG A   102                                                      
REMARK 465     HIS A   103                                                      
REMARK 465     ASP A   104                                                      
REMARK 465     TYR A   105                                                      
REMARK 465     THR A   106                                                      
REMARK 465     GLU A   107                                                      
REMARK 465     ILE A   108                                                      
REMARK 465     ASP A   109                                                      
REMARK 465     ASP A   110                                                      
REMARK 465     GLY A   111                                                      
REMARK 465     SER A   112                                                      
REMARK 465     LYS A   113                                                      
REMARK 465     GLY A   480                                                      
REMARK 465     LYS A   481                                                      
REMARK 465     PRO A   482                                                      
REMARK 465     VAL A   483                                                      
REMARK 465     LYS A   484                                                      
REMARK 465     SER A   485                                                      
REMARK 465     GLN A   486                                                      
REMARK 465     GLY A   487                                                      
REMARK 465     ILE A   488                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 124    CG   CD   CE   NZ                                   
REMARK 470     LYS A 153    CG   CD   CE   NZ                                   
REMARK 470     GLU A 240    CG   CD   OE1  OE2                                  
REMARK 470     PHE A 394    CG   CD1  CD2  CE1  CE2  CZ                         
REMARK 470     ARG A 418    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A 445    CG   CD   CE   NZ                                   
REMARK 470     LYS A 466    CG   CD   CE   NZ                                   
REMARK 470     SER A 469    OG                                                  
REMARK 470     ARG A 473    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU A 477    CG   CD   OE1  OE2                                  
REMARK 470     GLU A 478    CG   CD   OE1  OE2                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO A 173      155.58    -46.72                                   
REMARK 500    PRO A 175        1.56    -57.58                                   
REMARK 500    PRO A 217     -166.49    -67.83                                   
REMARK 500    VAL A 266       30.22   -146.81                                   
REMARK 500    ASP A 276        3.84     81.49                                   
REMARK 500    PHE A 398       41.71   -109.00                                   
REMARK 500    ALA A 474      155.78     77.23                                   
REMARK 500    ILE A 475      -59.83     74.19                                   
REMARK 500    GLU A 477      -60.93     87.83                                   
REMARK 500    GLU A 478        4.87    -64.05                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 809        DISTANCE =  5.36 ANGSTROMS                       
REMARK 610                                                                      
REMARK 610 MISSING HETEROATOM                                                   
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 610 I=INSERTION CODE):                                                   
REMARK 610   M RES C SSEQI                                                      
REMARK 610     E67 A  707                                                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NI A 702  NI                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 AKG A 701   O5                                                     
REMARK 620 2 AKG A 701   O1   79.9                                              
REMARK 620 3 HIS A 282   NE2  89.3  94.4                                        
REMARK 620 4 ASP A 284   OD1 174.2  96.5  95.7                                  
REMARK 620 5 HOH A 801   O    88.1  86.7 176.9  87.1                            
REMARK 620 6 HIS A 354   NE2  89.0 168.7  87.7  94.3  90.7                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 701                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 702                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 703                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 704                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 705                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 706                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E67 A 707                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3KVA   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF KIAA1718 JUMONJI DOMAIN IN COMPLEX WITH ALPHA-          
REMARK 900 KETOGLUTARATE                                                        
DBREF  3U78 A   92   488  UNP    Q6ZMT4   KDM7_HUMAN      92    488             
SEQRES   1 A  397  SER LEU MET LYS LYS ARG ARG ASN TRP HIS ARG HIS ASP          
SEQRES   2 A  397  TYR THR GLU ILE ASP ASP GLY SER LYS PRO VAL GLN ALA          
SEQRES   3 A  397  GLY THR ARG THR PHE ILE LYS GLU LEU ARG SER ARG VAL          
SEQRES   4 A  397  PHE PRO SER ALA ASP GLU ILE ILE ILE LYS MET HIS GLY          
SEQRES   5 A  397  SER GLN LEU THR GLN ARG TYR LEU GLU LYS HIS GLY PHE          
SEQRES   6 A  397  ASP VAL PRO ILE MET VAL PRO LYS LEU ASP ASP LEU GLY          
SEQRES   7 A  397  LEU ARG LEU PRO SER PRO THR PHE SER VAL MET ASP VAL          
SEQRES   8 A  397  GLU ARG TYR VAL GLY GLY ASP LYS VAL ILE ASP VAL ILE          
SEQRES   9 A  397  ASP VAL ALA ARG GLN ALA ASP SER LYS MET THR LEU HIS          
SEQRES  10 A  397  ASN TYR VAL LYS TYR PHE MET ASN PRO ASN ARG PRO LYS          
SEQRES  11 A  397  VAL LEU ASN VAL ILE SER LEU GLU PHE SER ASP THR LYS          
SEQRES  12 A  397  MET SER GLU LEU VAL GLU VAL PRO ASP ILE ALA LYS LYS          
SEQRES  13 A  397  LEU SER TRP VAL GLU ASN TYR TRP PRO ASP ASP SER VAL          
SEQRES  14 A  397  PHE PRO LYS PRO PHE VAL GLN LYS TYR CYS LEU MET GLY          
SEQRES  15 A  397  VAL GLN ASP SER TYR THR ASP PHE HIS ILE ASP PHE GLY          
SEQRES  16 A  397  GLY THR SER VAL TRP TYR HIS VAL LEU TRP GLY GLU LYS          
SEQRES  17 A  397  ILE PHE TYR LEU ILE LYS PRO THR ASP GLU ASN LEU ALA          
SEQRES  18 A  397  ARG TYR GLU SER TRP SER SER SER VAL THR GLN SER GLU          
SEQRES  19 A  397  VAL PHE PHE GLY ASP LYS VAL ASP LYS CYS TYR LYS CYS          
SEQRES  20 A  397  VAL VAL LYS GLN GLY HIS THR LEU PHE VAL PRO THR GLY          
SEQRES  21 A  397  TRP ILE HIS ALA VAL LEU THR SER GLN ASP CYS MET ALA          
SEQRES  22 A  397  PHE GLY GLY ASN PHE LEU HIS ASN LEU ASN ILE GLY MET          
SEQRES  23 A  397  GLN LEU ARG CYS TYR GLU MET GLU LYS ARG LEU LYS THR          
SEQRES  24 A  397  PRO ASP LEU PHE LYS PHE PRO PHE PHE GLU ALA ILE CYS          
SEQRES  25 A  397  TRP PHE VAL ALA LYS ASN LEU LEU GLU THR LEU LYS GLU          
SEQRES  26 A  397  LEU ARG GLU ASP GLY PHE GLN PRO GLN THR TYR LEU VAL          
SEQRES  27 A  397  GLN GLY VAL LYS ALA LEU HIS THR ALA LEU LYS LEU TRP          
SEQRES  28 A  397  MET LYS LYS GLU LEU VAL SER GLU HIS ALA PHE GLU ILE          
SEQRES  29 A  397  PRO ASP ASN VAL ARG PRO GLY HIS LEU ILE LYS GLU LEU          
SEQRES  30 A  397  SER LYS VAL ILE ARG ALA ILE GLU GLU GLU ASN GLY LYS          
SEQRES  31 A  397  PRO VAL LYS SER GLN GLY ILE                                  
HET    AKG  A 701      10                                                       
HET     NI  A 702       1                                                       
HET     CL  A 703       1                                                       
HET    SO4  A 704       5                                                       
HET    EDO  A 705       4                                                       
HET    EDO  A 706       4                                                       
HET    E67  A 707      27                                                       
HETNAM     AKG 2-OXOGLUTARIC ACID                                               
HETNAM      NI NICKEL (II) ION                                                  
HETNAM      CL CHLORIDE ION                                                     
HETNAM     SO4 SULFATE ION                                                      
HETNAM     EDO 1,2-ETHANEDIOL                                                   
HETNAM     E67 7-[(5-AMINOPENTYL)OXY]-N~4~-(1-BENZYLPIPERIDIN-4-YL)-            
HETNAM   2 E67  N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,          
HETNAM   3 E67  4-DIAMINE                                                       
HETSYN     EDO ETHYLENE GLYCOL                                                  
FORMUL   2  AKG    C5 H6 O5                                                     
FORMUL   3   NI    NI 2+                                                        
FORMUL   4   CL    CL 1-                                                        
FORMUL   5  SO4    O4 S 2-                                                      
FORMUL   6  EDO    2(C2 H6 O2)                                                  
FORMUL   8  E67    C31 H47 N7 O2                                                
FORMUL   9  HOH   *45(H2 O)                                                     
HELIX    1   1 THR A  119  ARG A  129  1                                  11    
HELIX    2   2 SER A  133  ILE A  137  5                                   5    
HELIX    3   3 HIS A  142  LEU A  146  5                                   5    
HELIX    4   4 THR A  147  GLY A  155  1                                   9    
HELIX    5   5 SER A  178  GLY A  187  1                                  10    
HELIX    6   6 LEU A  207  ASN A  216  1                                  10    
HELIX    7   7 THR A  233  VAL A  239  5                                   7    
HELIX    8   8 PRO A  242  SER A  249  1                                   8    
HELIX    9   9 SER A  249  TRP A  255  1                                   7    
HELIX   10  10 ASP A  284  THR A  288  5                                   5    
HELIX   11  11 THR A  307  SER A  319  1                                  13    
HELIX   12  12 THR A  322  VAL A  326  5                                   5    
HELIX   13  13 PHE A  327  VAL A  332  5                                   6    
HELIX   14  14 ASN A  374  LEU A  388  1                                  15    
HELIX   15  15 THR A  390  PHE A  396  5                                   7    
HELIX   16  16 PHE A  398  GLU A  419  1                                  22    
HELIX   17  17 GLN A  425  LYS A  444  1                                  20    
HELIX   18  18 LEU A  447  ILE A  455  5                                   9    
HELIX   19  19 ARG A  460  ARG A  473  1                                  14    
SHEET    1   A 6 ILE A 139  LYS A 140  0                                        
SHEET    2   A 6 ILE A 160  VAL A 162  1  O  MET A 161   N  ILE A 139           
SHEET    3   A 6 THR A 345  VAL A 348 -1  O  THR A 345   N  VAL A 162           
SHEET    4   A 6 SER A 289  ILE A 304 -1  N  TYR A 292   O  LEU A 346           
SHEET    5   A 6 ILE A 353  PHE A 369 -1  O  PHE A 365   N  HIS A 293           
SHEET    6   A 6 SER A 277  HIS A 282 -1  N  SER A 277   O  THR A 358           
SHEET    1   B 7 ALA A 201  THR A 206  0                                        
SHEET    2   B 7 VAL A 191  ASP A 196 -1  N  VAL A 194   O  SER A 203           
SHEET    3   B 7 LEU A 223  GLU A 229 -1  O  ASN A 224   N  ILE A 195           
SHEET    4   B 7 TYR A 269  GLY A 273 -1  O  MET A 272   N  VAL A 225           
SHEET    5   B 7 ILE A 353  PHE A 369 -1  O  GLY A 366   N  TYR A 269           
SHEET    6   B 7 SER A 289  ILE A 304 -1  N  HIS A 293   O  PHE A 365           
SHEET    7   B 7 TYR A 336  LYS A 341 -1  O  CYS A 338   N  PHE A 301           
LINK         O5  AKG A 701                NI    NI A 702     1555   1555  2.19  
LINK         O1  AKG A 701                NI    NI A 702     1555   1555  2.25  
LINK         NE2 HIS A 282                NI    NI A 702     1555   1555  2.25  
LINK         OD1 ASP A 284                NI    NI A 702     1555   1555  2.26  
LINK        NI    NI A 702                 O   HOH A 801     1555   1555  2.27  
LINK         NE2 HIS A 354                NI    NI A 702     1555   1555  2.33  
SITE     1 AC1 13 ASN A 224  ILE A 226  THR A 279  HIS A 282                    
SITE     2 AC1 13 ASP A 284  TYR A 292  LYS A 299  HIS A 354                    
SITE     3 AC1 13 VAL A 356   NI A 702  E67 A 707  HOH A 801                    
SITE     4 AC1 13 HOH A 843                                                     
SITE     1 AC2  5 HIS A 282  ASP A 284  HIS A 354  AKG A 701                    
SITE     2 AC2  5 HOH A 801                                                     
SITE     1 AC3  5 SER A 249  TRP A 250  VAL A 251  PHE A 369                    
SITE     2 AC3  5 LEU A 370                                                     
SITE     1 AC4  3 GLU A 309  ARG A 313  ASP A 333                               
SITE     1 AC5  2 LYS A 153  HOH A 873                                          
SITE     1 AC6  1 ASP A 167                                                     
SITE     1 AC7  9 GLN A 200  ASP A 202  LYS A 204  ASP A 280                    
SITE     2 AC7  9 ASP A 284  PHE A 285  PRO A 391  ASP A 392                    
SITE     3 AC7  9 AKG A 701                                                     
CRYST1   77.429   77.429  289.685  90.00  90.00 120.00 P 61 2 2     12          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.012915  0.007457  0.000000        0.00000                         
SCALE2      0.000000  0.014913  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.003452        0.00000