PDB Short entry for 3U8H HEADER HYDROLASE 17-OCT-11 3U8H TITLE FUNCTIONALLY SELECTIVE INHIBITION OF GROUP IIA PHOSPHOLIPASE A2 TITLE 2 REVEALS A ROLE FOR VIMENTIN IN REGULATING ARACHIDONIC ACID METABOLISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A2, MEMBRANE ASSOCIATED; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GIIC SPLA2, GROUP IIA PHOSPHOLIPASE A2, NON-PANCREATIC COMPND 5 SECRETORY PHOSPHOLIPASE A2, NPS-PLA2, PHOSPHATIDYLCHOLINE 2- COMPND 6 ACYLHYDROLASE 2A; COMPND 7 EC: 3.1.1.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLA2G2A, PLA2B, PLA2L, RASF-A; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS SECRETED PHOSPHOLIPASE A2, PHOSPHOLIPASE A2 ACTIVITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.K.LEE,K.J.BRYANT,R.BOUVERET,P.-W.LEI,A.P.DUFF,S.J.HARROP,E.P.HUANG, AUTHOR 2 R.P.HARVEY,M.H.GELB,P.P.GRAY,P.M.CURMI,A.M.CUNNINGHAM,W.B.CHURCH, AUTHOR 3 K.F.SCOTT REVDAT 2 12-JUN-13 3U8H 1 JRNL REVDAT 1 17-OCT-12 3U8H 0 JRNL AUTH L.K.LEE,K.J.BRYANT,R.BOUVERET,P.W.LEI,A.P.DUFF,S.J.HARROP, JRNL AUTH 2 E.P.HUANG,R.P.HARVEY,M.H.GELB,P.P.GRAY,P.M.CURMI, JRNL AUTH 3 A.M.CUNNINGHAM,W.B.CHURCH,K.F.SCOTT JRNL TITL SELECTIVE INHIBITION OF HUMAN GROUP IIA-SECRETED JRNL TITL 2 PHOSPHOLIPASE A2 (HGIIA) SIGNALING REVEALS ARACHIDONIC ACID JRNL TITL 3 METABOLISM IS ASSOCIATED WITH COLOCALIZATION OF HGIIA TO JRNL TITL 4 VIMENTIN IN RHEUMATOID SYNOVIOCYTES. JRNL REF J.BIOL.CHEM. V. 288 15269 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23482564 JRNL DOI 10.1074/JBC.M112.397893 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 13591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 989 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.12000 REMARK 3 B22 (A**2) : -3.12000 REMARK 3 B33 (A**2) : 4.68000 REMARK 3 B12 (A**2) : -1.56000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2047 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1469 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2749 ; 1.103 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3517 ; 0.773 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 5.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;32.812 ;22.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;13.670 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ; 9.760 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2301 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 475 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 0.744 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 515 ; 0.217 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1956 ; 1.354 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 816 ; 2.574 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 3.859 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 124 4 REMARK 3 1 B 1 B 124 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1640 ; 0.240 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1640 ; 0.300 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8698 -13.5943 -12.3072 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.1022 REMARK 3 T33: 0.1421 T12: 0.0429 REMARK 3 T13: 0.0019 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 3.4332 L22: 1.5004 REMARK 3 L33: 1.5063 L12: -0.1117 REMARK 3 L13: 0.5537 L23: 0.6010 REMARK 3 S TENSOR REMARK 3 S11: 0.2575 S12: -0.2015 S13: -0.2793 REMARK 3 S21: -0.0581 S22: -0.1233 S23: -0.0167 REMARK 3 S31: 0.1168 S32: 0.0250 S33: -0.1343 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9439 -7.5464 -20.5648 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.0922 REMARK 3 T33: 0.0808 T12: 0.0651 REMARK 3 T13: 0.0068 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 5.7537 L22: 1.8928 REMARK 3 L33: 2.2911 L12: -0.5671 REMARK 3 L13: 0.1998 L23: -0.2530 REMARK 3 S TENSOR REMARK 3 S11: 0.1665 S12: 0.4599 S13: 0.3267 REMARK 3 S21: -0.3304 S22: -0.1323 S23: -0.0444 REMARK 3 S31: -0.0246 S32: 0.1023 S33: -0.0342 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2206 -11.0168 -10.8398 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.1776 REMARK 3 T33: 0.1101 T12: 0.0368 REMARK 3 T13: 0.0281 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 5.4847 L22: 1.3744 REMARK 3 L33: 1.9522 L12: -0.3648 REMARK 3 L13: 0.6143 L23: -0.2003 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: 0.1893 S13: 0.1392 REMARK 3 S21: -0.1508 S22: 0.0098 S23: -0.1327 REMARK 3 S31: -0.0217 S32: 0.4063 S33: -0.0823 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 31 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0513 -11.9965 2.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.1851 REMARK 3 T33: 0.0961 T12: 0.0522 REMARK 3 T13: -0.0463 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 3.0361 L22: 6.3939 REMARK 3 L33: 0.7634 L12: -3.9271 REMARK 3 L13: -0.2335 L23: -0.5292 REMARK 3 S TENSOR REMARK 3 S11: 0.2321 S12: -0.1213 S13: 0.0068 REMARK 3 S21: -0.4749 S22: -0.0490 S23: 0.2417 REMARK 3 S31: 0.0258 S32: -0.0378 S33: -0.1831 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8273 -9.8655 10.7062 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.1717 REMARK 3 T33: 0.0705 T12: 0.0158 REMARK 3 T13: -0.0301 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 3.2909 L22: 4.9455 REMARK 3 L33: 2.2789 L12: -2.8904 REMARK 3 L13: 0.2987 L23: -0.2040 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: -0.5287 S13: 0.1537 REMARK 3 S21: 0.2608 S22: 0.1498 S23: -0.2185 REMARK 3 S31: -0.1076 S32: -0.0161 S33: -0.0526 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7901 2.4662 0.9841 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.1325 REMARK 3 T33: 0.1324 T12: 0.0827 REMARK 3 T13: -0.0108 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 2.7180 L22: 6.0697 REMARK 3 L33: 4.1096 L12: -1.4330 REMARK 3 L13: 0.9484 L23: -0.7208 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: 0.0158 S13: 0.1325 REMARK 3 S21: 0.0149 S22: 0.2403 S23: -0.1764 REMARK 3 S31: -0.3204 S32: -0.1264 S33: -0.1969 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3U8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-11. REMARK 100 THE RCSB ID CODE IS RCSB068438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 1-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90020 REMARK 200 MONOCHROMATOR : BENT GE(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.932 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HCL PH 7.4, 10 MM CACL2, REMARK 280 0.5 MM BETA-OCTYL GLUCOSIDE AND 4 M NACL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.64200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.28400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 56 CD CE NZ REMARK 480 LYS A 79 CG CD CE NZ REMARK 480 LYS A 107 CD CE NZ REMARK 480 LYS A 115 CE NZ REMARK 480 LYS B 56 CD CE NZ REMARK 480 LYS B 79 CG CD CE NZ REMARK 480 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 79 NH2 ARG A 84 3554 1.65 REMARK 500 NH2 ARG B 84 NZ LYS B 79 3654 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 79 CA - CB - CG ANGL. DEV. = 19.1 DEGREES REMARK 500 LYS B 79 CB - CG - CD ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 61 -78.80 -135.84 REMARK 500 TYR A 111 58.80 -114.01 REMARK 500 THR B 61 -81.87 -132.24 REMARK 500 TYR B 111 58.15 -114.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 127 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 31 O REMARK 620 2 BHP B 125 O1 152.6 REMARK 620 3 GLY B 29 O 79.6 74.4 REMARK 620 4 HIS B 27 O 82.4 89.5 91.2 REMARK 620 5 BHP B 125 O3 85.5 102.9 90.2 167.4 REMARK 620 6 ASP B 48 OD1 130.3 77.1 147.7 103.6 81.5 REMARK 620 7 ASP B 48 OD2 81.1 124.3 160.6 84.3 90.2 51.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 127 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 29 O REMARK 620 2 BHP A 125 O3 87.0 REMARK 620 3 GLY A 31 O 81.5 84.8 REMARK 620 4 BHP A 125 O1 75.1 101.9 155.2 REMARK 620 5 HIS A 27 O 99.9 168.5 87.3 88.7 REMARK 620 6 ASP A 48 OD1 148.2 83.0 127.2 77.5 95.4 REMARK 620 7 ASP A 48 OD2 156.9 82.8 76.9 127.3 87.4 50.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 126 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 112 O REMARK 620 2 ASN B 114 OD1 94.5 REMARK 620 3 HOH B 135 O 97.9 91.4 REMARK 620 4 GLY B 25 O 93.3 91.9 168.0 REMARK 620 5 HOH B 160 O 163.8 94.2 95.6 72.7 REMARK 620 6 PHE B 23 O 93.0 172.6 87.7 87.5 78.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 126 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 25 O REMARK 620 2 TYR A 112 O 96.2 REMARK 620 3 ASN A 114 OD1 95.6 89.0 REMARK 620 4 HOH A 136 O 166.7 94.7 77.0 REMARK 620 5 HOH A 152 O 80.4 175.8 88.9 88.4 REMARK 620 6 PHE A 23 O 96.0 92.1 168.2 91.2 90.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BHP A 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BHP B 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U8B RELATED DB: PDB REMARK 900 RELATED ID: 3U8D RELATED DB: PDB REMARK 900 RELATED ID: 3U8I RELATED DB: PDB DBREF 3U8H A 1 124 UNP P14555 PA2GA_HUMAN 21 144 DBREF 3U8H B 1 124 UNP P14555 PA2GA_HUMAN 21 144 SEQRES 1 A 124 ASN LEU VAL ASN PHE HIS ARG MET ILE LYS LEU THR THR SEQRES 2 A 124 GLY LYS GLU ALA ALA LEU SER TYR GLY PHE TYR GLY CYS SEQRES 3 A 124 HIS CYS GLY VAL GLY GLY ARG GLY SER PRO LYS ASP ALA SEQRES 4 A 124 THR ASP ARG CYS CYS VAL THR HIS ASP CYS CYS TYR LYS SEQRES 5 A 124 ARG LEU GLU LYS ARG GLY CYS GLY THR LYS PHE LEU SER SEQRES 6 A 124 TYR LYS PHE SER ASN SER GLY SER ARG ILE THR CYS ALA SEQRES 7 A 124 LYS GLN ASP SER CYS ARG SER GLN LEU CYS GLU CYS ASP SEQRES 8 A 124 LYS ALA ALA ALA THR CYS PHE ALA ARG ASN LYS THR THR SEQRES 9 A 124 TYR ASN LYS LYS TYR GLN TYR TYR SER ASN LYS HIS CYS SEQRES 10 A 124 ARG GLY SER THR PRO ARG CYS SEQRES 1 B 124 ASN LEU VAL ASN PHE HIS ARG MET ILE LYS LEU THR THR SEQRES 2 B 124 GLY LYS GLU ALA ALA LEU SER TYR GLY PHE TYR GLY CYS SEQRES 3 B 124 HIS CYS GLY VAL GLY GLY ARG GLY SER PRO LYS ASP ALA SEQRES 4 B 124 THR ASP ARG CYS CYS VAL THR HIS ASP CYS CYS TYR LYS SEQRES 5 B 124 ARG LEU GLU LYS ARG GLY CYS GLY THR LYS PHE LEU SER SEQRES 6 B 124 TYR LYS PHE SER ASN SER GLY SER ARG ILE THR CYS ALA SEQRES 7 B 124 LYS GLN ASP SER CYS ARG SER GLN LEU CYS GLU CYS ASP SEQRES 8 B 124 LYS ALA ALA ALA THR CYS PHE ALA ARG ASN LYS THR THR SEQRES 9 B 124 TYR ASN LYS LYS TYR GLN TYR TYR SER ASN LYS HIS CYS SEQRES 10 B 124 ARG GLY SER THR PRO ARG CYS HET BHP A 125 36 HET CA A 126 1 HET CA A 127 1 HET CL A 128 1 HET CL A 129 1 HET BHP B 125 36 HET CA B 126 1 HET CA B 127 1 HET CL B 128 1 HET CL B 129 1 HETNAM BHP (S)-5-(4-BENZYLOXY-PHENYL)-4-(7-PHENYL-HEPTANOYLAMINO)- HETNAM 2 BHP PENTANOIC ACID HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 BHP 2(C31 H37 N O4) FORMUL 4 CA 4(CA 2+) FORMUL 6 CL 4(CL 1-) FORMUL 13 HOH *100(H2 O) HELIX 1 1 ASN A 1 GLY A 14 1 14 HELIX 2 2 GLU A 16 GLY A 22 1 7 HELIX 3 3 ASP A 38 GLY A 58 1 21 HELIX 4 4 ASP A 81 ASN A 101 1 21 HELIX 5 5 LYS A 102 TYR A 105 5 4 HELIX 6 6 ASN A 106 TYR A 111 1 6 HELIX 7 7 SER A 113 CYS A 117 5 5 HELIX 8 8 LEU B 2 GLY B 14 1 13 HELIX 9 9 GLU B 16 GLY B 22 1 7 HELIX 10 10 ASP B 38 GLY B 58 1 21 HELIX 11 11 ASP B 81 ASN B 101 1 21 HELIX 12 12 LYS B 102 TYR B 105 5 4 HELIX 13 13 ASN B 106 GLN B 110 5 5 HELIX 14 14 SER B 113 CYS B 117 5 5 SHEET 1 A 2 PHE A 68 SER A 71 0 SHEET 2 A 2 ARG A 74 CYS A 77 -1 O THR A 76 N SER A 69 SHEET 1 B 2 PHE B 68 SER B 71 0 SHEET 2 B 2 ARG B 74 CYS B 77 -1 O THR B 76 N SER B 69 SSBOND 1 CYS A 26 CYS A 117 1555 1555 2.02 SSBOND 2 CYS A 28 CYS A 44 1555 1555 2.02 SSBOND 3 CYS A 43 CYS A 97 1555 1555 2.03 SSBOND 4 CYS A 49 CYS A 124 1555 1555 2.03 SSBOND 5 CYS A 50 CYS A 90 1555 1555 2.03 SSBOND 6 CYS A 59 CYS A 83 1555 1555 2.03 SSBOND 7 CYS A 77 CYS A 88 1555 1555 2.03 SSBOND 8 CYS B 26 CYS B 117 1555 1555 2.02 SSBOND 9 CYS B 28 CYS B 44 1555 1555 2.02 SSBOND 10 CYS B 43 CYS B 97 1555 1555 2.04 SSBOND 11 CYS B 49 CYS B 124 1555 1555 2.04 SSBOND 12 CYS B 50 CYS B 90 1555 1555 2.03 SSBOND 13 CYS B 59 CYS B 83 1555 1555 2.03 SSBOND 14 CYS B 77 CYS B 88 1555 1555 2.03 LINK O GLY B 31 CA CA B 127 1555 1555 2.23 LINK O1 BHP B 125 CA CA B 127 1555 1555 2.26 LINK O GLY A 29 CA CA A 127 1555 1555 2.26 LINK O TYR B 112 CA CA B 126 1555 1555 2.27 LINK O GLY A 25 CA CA A 126 1555 1555 2.28 LINK O3 BHP A 125 CA CA A 127 1555 1555 2.29 LINK O GLY B 29 CA CA B 127 1555 1555 2.30 LINK O GLY A 31 CA CA A 127 1555 1555 2.30 LINK OD1 ASN B 114 CA CA B 126 1555 1555 2.31 LINK O1 BHP A 125 CA CA A 127 1555 1555 2.32 LINK O TYR A 112 CA CA A 126 1555 1555 2.33 LINK OD1 ASN A 114 CA CA A 126 1555 1555 2.33 LINK CA CA B 126 O HOH B 135 1555 1555 2.33 LINK O HIS B 27 CA CA B 127 1555 1555 2.35 LINK CA CA A 126 O HOH A 136 1555 1555 2.36 LINK O HIS A 27 CA CA A 127 1555 1555 2.38 LINK O GLY B 25 CA CA B 126 1555 1555 2.40 LINK CA CA A 126 O HOH A 152 1555 1555 2.41 LINK O3 BHP B 125 CA CA B 127 1555 1555 2.41 LINK CA CA B 126 O HOH B 160 1555 1555 2.42 LINK OD1 ASP B 48 CA CA B 127 1555 1555 2.42 LINK O PHE A 23 CA CA A 126 1555 1555 2.43 LINK OD1 ASP A 48 CA CA A 127 1555 1555 2.46 LINK O PHE B 23 CA CA B 126 1555 1555 2.49 LINK OD2 ASP A 48 CA CA A 127 1555 1555 2.58 LINK OD2 ASP B 48 CA CA B 127 1555 1555 2.59 SITE 1 AC1 16 LEU A 2 HIS A 6 ALA A 17 TYR A 21 SITE 2 AC1 16 GLY A 22 HIS A 27 GLY A 29 VAL A 30 SITE 3 AC1 16 GLY A 31 HIS A 47 ASP A 48 TYR A 51 SITE 4 AC1 16 CA A 127 PHE B 23 VAL B 30 BHP B 125 SITE 1 AC2 6 PHE A 23 GLY A 25 TYR A 112 ASN A 114 SITE 2 AC2 6 HOH A 136 HOH A 152 SITE 1 AC3 5 HIS A 27 GLY A 29 GLY A 31 ASP A 48 SITE 2 AC3 5 BHP A 125 SITE 1 AC4 3 ASN A 4 ARG A 7 ARG B 118 SITE 1 AC5 4 PHE A 63 SER A 65 ARG A 84 LYS B 108 SITE 1 AC6 12 ALA A 18 PHE A 23 BHP A 125 PHE B 5 SITE 2 AC6 12 ALA B 17 HIS B 27 CYS B 28 GLY B 29 SITE 3 AC6 12 GLY B 31 HIS B 47 ASP B 48 CA B 127 SITE 1 AC7 6 PHE B 23 GLY B 25 TYR B 112 ASN B 114 SITE 2 AC7 6 HOH B 135 HOH B 160 SITE 1 AC8 5 HIS B 27 GLY B 29 GLY B 31 ASP B 48 SITE 2 AC8 5 BHP B 125 SITE 1 AC9 3 ARG A 118 ASN B 4 ARG B 7 SITE 1 BC1 4 LYS A 108 PHE B 63 SER B 65 ARG B 84 CRYST1 74.792 74.792 49.926 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013370 0.007719 0.000000 0.00000 SCALE2 0.000000 0.015439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020030 0.00000