PDB Short entry for 3UGO HEADER TRANSCRIPTION/DNA 02-NOV-11 3UGO TITLE CRYSTAL STRUCTURE OF RNA-POLYMERASE SIGMA SUBUNIT DOMAIN 2 COMPLEXED TITLE 2 WITH -10 PROMOTER ELEMENT SSDNA OLIGO (TACAAT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 2 (UNP RESIDUES 92-332); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3'; COMPND 8 CHAIN: B, C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, BACTERIAL PROMOTER OPENING, G-QUARTET, G- KEYWDS 2 QUADRUPLEX, DNA BINDING, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.FEKLISTOV,S.A.DARST REVDAT 3 13-SEP-23 3UGO 1 REMARK SEQADV LINK REVDAT 2 07-MAR-12 3UGO 1 JRNL REVDAT 1 07-DEC-11 3UGO 0 JRNL AUTH A.FEKLISTOV,S.A.DARST JRNL TITL STRUCTURAL BASIS FOR PROMOTER-10 ELEMENT RECOGNITION BY THE JRNL TITL 2 BACTERIAL RNA POLYMERASE SIGMA SUBUNIT. JRNL REF CELL(CAMBRIDGE,MASS.) V. 147 1257 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 22136875 JRNL DOI 10.1016/J.CELL.2011.10.041 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.4845 - 4.3535 1.00 2880 141 0.1900 0.2381 REMARK 3 2 4.3535 - 3.4586 1.00 2715 146 0.1668 0.2046 REMARK 3 3 3.4586 - 3.0223 1.00 2682 135 0.1959 0.2285 REMARK 3 4 3.0223 - 2.7464 1.00 2625 163 0.2135 0.2495 REMARK 3 5 2.7464 - 2.5498 1.00 2644 138 0.1991 0.2548 REMARK 3 6 2.5498 - 2.3996 1.00 2629 139 0.1999 0.2195 REMARK 3 7 2.3996 - 2.2795 1.00 2636 136 0.2022 0.2451 REMARK 3 8 2.2795 - 2.1803 1.00 2603 151 0.2320 0.2505 REMARK 3 9 2.1803 - 2.0960 1.00 2574 169 0.2815 0.3169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.48270 REMARK 3 B22 (A**2) : -11.48270 REMARK 3 B33 (A**2) : 23.14390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1874 REMARK 3 ANGLE : 1.121 2594 REMARK 3 CHIRALITY : 0.056 287 REMARK 3 PLANARITY : 0.003 281 REMARK 3 DIHEDRAL : 19.478 759 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08090 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.096 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.71200 REMARK 200 R SYM FOR SHELL (I) : 0.71200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG8000, 20% PEG300, 10% GLYCEROL, REMARK 280 0.15% MELLITIC ACID, 100 MM TRIS, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K B 12 LIES ON A SPECIAL POSITION. REMARK 375 K K B 13 LIES ON A SPECIAL POSITION. REMARK 375 K K B 14 LIES ON A SPECIAL POSITION. REMARK 375 K K C 12 LIES ON A SPECIAL POSITION. REMARK 375 K K C 13 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 107 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 108 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 88 REMARK 465 PRO A 89 REMARK 465 HIS A 90 REMARK 465 MET A 91 REMARK 465 THR A 272 REMARK 465 ILE A 273 REMARK 465 ARG A 274 REMARK 465 ILE A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 HIS A 278 REMARK 465 MET A 279 REMARK 465 VAL A 280 REMARK 465 GLU A 281 REMARK 465 THR A 282 REMARK 465 ILE A 283 REMARK 465 ASN A 284 REMARK 465 LYS A 285 REMARK 465 LEU A 286 REMARK 465 SER A 287 REMARK 465 ARG A 288 REMARK 465 THR A 289 REMARK 465 ALA A 290 REMARK 465 ARG A 291 REMARK 465 GLN A 292 REMARK 465 LEU A 293 REMARK 465 GLN A 294 REMARK 465 GLN A 295 REMARK 465 GLU A 296 REMARK 465 LEU A 297 REMARK 465 GLY A 298 REMARK 465 ARG A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 SER A 302 REMARK 465 TYR A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 ILE A 306 REMARK 465 ALA A 307 REMARK 465 GLU A 308 REMARK 465 ALA A 309 REMARK 465 MET A 310 REMARK 465 GLY A 311 REMARK 465 PRO A 312 REMARK 465 GLY A 313 REMARK 465 TRP A 314 REMARK 465 ASP A 315 REMARK 465 ALA A 316 REMARK 465 LYS A 317 REMARK 465 ARG A 318 REMARK 465 VAL A 319 REMARK 465 GLU A 320 REMARK 465 GLU A 321 REMARK 465 THR A 322 REMARK 465 LEU A 323 REMARK 465 LYS A 324 REMARK 465 ILE A 325 REMARK 465 ALA A 326 REMARK 465 GLN A 327 REMARK 465 GLU A 328 REMARK 465 PRO A 329 REMARK 465 VAL A 330 REMARK 465 SER A 331 REMARK 465 LEU A 332 REMARK 465 DT C 1 REMARK 465 DG C 2 REMARK 465 DT C 3 REMARK 465 DA C 4 REMARK 465 DC C 5 REMARK 465 DA C 6 REMARK 465 DA C 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 116 O HOH A 357 1.89 REMARK 500 OE2 GLU A 113 O HOH A 58 1.96 REMARK 500 O HOH A 25 O HOH A 363 2.09 REMARK 500 O HOH B 19 O HOH B 41 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 4 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 DA B 6 O4' - C1' - N9 ANGL. DEV. = -7.2 DEGREES REMARK 500 DA B 7 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA B 7 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT B 8 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG B 9 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG B 9 C5 - C6 - O6 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = -8.2 DEGREES REMARK 500 DG B 10 C6 - N1 - C2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG B 10 C5 - C6 - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG B 10 C5 - C6 - O6 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 11 C5 - C6 - O6 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 9 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG C 9 C5 - C6 - O6 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG C 10 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG C 10 C5 - C6 - O6 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG C 11 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG C 11 C5 - C6 - O6 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 12 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 9 O6 REMARK 620 2 DG C 11 O6 72.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 14 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 9 O6 REMARK 620 2 DG B 10 O6 76.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 13 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 10 O6 REMARK 620 2 DG B 11 O6 67.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 13 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 9 O6 REMARK 620 2 DG C 10 O6 69.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 12 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 10 O6 REMARK 620 2 DG C 11 O6 76.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 13 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UGP RELATED DB: PDB DBREF 3UGO A 92 332 UNP Q9EZJ8 Q9EZJ8_THEAQ 92 332 DBREF 3UGO B 1 11 PDB 3UGO 3UGO 1 11 DBREF 3UGO C 1 11 PDB 3UGO 3UGO 1 11 SEQADV 3UGO GLY A 88 UNP Q9EZJ8 EXPRESSION TAG SEQADV 3UGO PRO A 89 UNP Q9EZJ8 EXPRESSION TAG SEQADV 3UGO HIS A 90 UNP Q9EZJ8 EXPRESSION TAG SEQADV 3UGO MET A 91 UNP Q9EZJ8 EXPRESSION TAG SEQRES 1 A 245 GLY PRO HIS MET THR SER ASP PRO VAL ARG GLN TYR LEU SEQRES 2 A 245 HIS GLU ILE GLY GLN VAL PRO LEU LEU THR LEU GLU GLU SEQRES 3 A 245 GLU ILE ASP LEU ALA ARG LYS VAL GLU GLU GLY MET GLU SEQRES 4 A 245 ALA ILE LYS LYS LEU SER GLU ALA THR GLY LEU ASP GLN SEQRES 5 A 245 GLU LEU ILE ARG GLU VAL VAL ARG ALA LYS ILE LEU GLY SEQRES 6 A 245 THR ALA ARG ILE GLN LYS ILE PRO GLY LEU LYS GLU LYS SEQRES 7 A 245 PRO ASP PRO LYS THR VAL GLU GLU VAL ASP GLY LYS LEU SEQRES 8 A 245 LYS SER LEU PRO LYS GLU LEU LYS ARG TYR LEU HIS ILE SEQRES 9 A 245 ALA ARG GLU GLY GLU ALA ALA ARG GLN HIS LEU ILE GLU SEQRES 10 A 245 ALA ASN LEU ARG LEU VAL VAL SER ILE ALA LYS LYS TYR SEQRES 11 A 245 THR GLY ARG GLY LEU SER PHE LEU ASP LEU ILE GLN GLU SEQRES 12 A 245 GLY ASN GLN GLY LEU ILE ARG ALA VAL GLU LYS PHE GLU SEQRES 13 A 245 TYR LYS ARG ARG PHE LYS PHE SER THR TYR ALA THR TRP SEQRES 14 A 245 TRP ILE ARG GLN ALA ILE ASN ARG ALA ILE ALA ASP GLN SEQRES 15 A 245 ALA ARG THR ILE ARG ILE PRO VAL HIS MET VAL GLU THR SEQRES 16 A 245 ILE ASN LYS LEU SER ARG THR ALA ARG GLN LEU GLN GLN SEQRES 17 A 245 GLU LEU GLY ARG GLU PRO SER TYR GLU GLU ILE ALA GLU SEQRES 18 A 245 ALA MET GLY PRO GLY TRP ASP ALA LYS ARG VAL GLU GLU SEQRES 19 A 245 THR LEU LYS ILE ALA GLN GLU PRO VAL SER LEU SEQRES 1 B 11 DT DG DT DA DC DA DA DT DG DG DG SEQRES 1 C 11 DT DG DT DA DC DA DA DT DG DG DG HET K B 12 1 HET K B 13 1 HET K B 14 1 HET K C 12 1 HET K C 13 1 HETNAM K POTASSIUM ION FORMUL 4 K 5(K 1+) FORMUL 9 HOH *131(H2 O) HELIX 1 1 SER A 93 GLY A 104 1 12 HELIX 2 2 THR A 110 GLY A 136 1 27 HELIX 3 3 ASP A 138 LYS A 149 1 12 HELIX 4 4 ILE A 150 ALA A 154 5 5 HELIX 5 5 ASP A 167 SER A 180 1 14 HELIX 6 6 PRO A 182 ALA A 205 1 24 HELIX 7 7 ASN A 206 LYS A 215 1 10 HELIX 8 8 LYS A 216 THR A 218 5 3 HELIX 9 9 SER A 223 PHE A 242 1 20 HELIX 10 10 GLU A 243 ARG A 247 5 5 HELIX 11 11 LYS A 249 ALA A 270 1 22 LINK O6 DG B 9 K K B 12 1555 1555 2.96 LINK O6 DG B 9 K K B 14 1555 1555 2.98 LINK O6 DG B 10 K K B 13 1555 1555 3.15 LINK O6 DG B 10 K K B 14 1555 1555 2.91 LINK O6 DG B 11 K K B 13 1555 1555 2.73 LINK K K B 12 O6 DG C 11 1555 1555 2.99 LINK O6 DG C 9 K K C 13 1555 1555 2.79 LINK O6 DG C 10 K K C 12 1555 1555 2.89 LINK O6 DG C 10 K K C 13 1555 1555 3.27 LINK O6 DG C 11 K K C 12 1555 1555 3.05 SITE 1 AC1 4 DG B 9 K B 14 DG C 11 K C 12 SITE 1 AC2 3 DG B 10 DG B 11 K B 14 SITE 1 AC3 4 DG B 9 DG B 10 K B 12 K B 13 SITE 1 AC4 3 K B 12 DG C 10 DG C 11 SITE 1 AC5 2 DG C 9 DG C 10 CRYST1 86.134 86.134 111.728 90.00 90.00 90.00 P 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008950 0.00000