PDB Short entry for 3UKD HEADER TRANSFERASE 20-MAY-97 3UKD TITLE UMP/CMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND ALF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UMP/CMP KINASE; COMPND 5 EC: 2.7.4.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 STRAIN: AX2-214; SOURCE 5 GENE: KCY_DICDI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIMS5-CDUK-1; SOURCE 9 EXPRESSION_SYSTEM_GENE: KCY_DICDI KEYWDS NUCLEOSIDE MONOPHOSPHATE KINASE, NMP KINASE, PHOSPHORYL TRANSFER, KEYWDS 2 TRANSITION STATE ANALOG COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.SCHLICHTING,J.REINSTEIN REVDAT 3 28-FEB-24 3UKD 1 REMARK LINK REVDAT 2 24-FEB-09 3UKD 1 VERSN REVDAT 1 20-MAY-98 3UKD 0 JRNL AUTH I.SCHLICHTING,J.REINSTEIN JRNL TITL STRUCTURES OF ACTIVE CONFORMATIONS OF UMP KINASE FROM JRNL TITL 2 DICTYOSTELIUM DISCOIDEUM SUGGEST PHOSPHORYL TRANSFER IS JRNL TITL 3 ASSOCIATIVE. JRNL REF BIOCHEMISTRY V. 36 9290 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9280438 JRNL DOI 10.1021/BI970974C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SCHEFFZEK,W.KLICHE,L.WIESMULLER,J.REINSTEIN REMARK 1 TITL CRYSTAL STRUCTURE OF THE COMPLEX OF UMP/CMP KINASE FROM REMARK 1 TITL 2 DICTYOSTELIUM DISCOIDEUM AND THE BISUBSTRATE INHIBITOR REMARK 1 TITL 3 P1-(5'-ADENOSYL) P5-(5'-URIDYL) PENTAPHOSPHATE (UP5A) AND REMARK 1 TITL 4 MG2+ AT 2.2 A: IMPLICATIONS FOR WATER-MEDIATED SPECIFICITY REMARK 1 REF BIOCHEMISTRY V. 35 9716 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.WIESMULLER,K.SCHEFFZEK,W.KLICHE,R.S.GOODY,A.WITTINGHOFER, REMARK 1 AUTH 2 J.REINSTEIN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 UMP/CMP-KINASE FROM DICTYOSTELIUM DISCOIDEUM WITH THE REMARK 1 TITL 3 SPECIFIC BISUBSTRATE INHIBITOR P1-(ADENOSINE 5')-P5-(URIDINE REMARK 1 TITL 4 5')-PENTAPHOSPHATE (UP5A) REMARK 1 REF FEBS LETT. V. 363 22 1995 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.WIESMULLER,A.A.NOEGEL,O.BARZU,G.GERISCH,M.SCHLEICHER REMARK 1 TITL CDNA-DERIVED SEQUENCE OF UMP-CMP KINASE FROM DICTYOSTELIUM REMARK 1 TITL 2 DISCOIDEUM AND EXPRESSION OF THE ENZYME IN ESCHERICHIA COLI REMARK 1 REF J.BIOL.CHEM. V. 265 6339 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 24834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.190 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-96 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : Y REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 9.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.35000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.40000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.17500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.40000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.52500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.40000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.17500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.40000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.52500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 142 C GLU A 143 N 0.278 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 142 CA - C - N ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 140 56.17 -93.06 REMARK 500 ASN A 175 58.13 -91.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 142 -20.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ALF3 IS A PLANAR TRIGONAL TRANSITION STATE ANALOG OF THE REMARK 600 PHOSPHORYL GROUP BEING TRANSFERRED. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AF3 A 501 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 148 NH2 REMARK 620 2 AF3 A 501 F1 75.1 REMARK 620 3 AF3 A 501 F2 70.1 126.6 REMARK 620 4 AF3 A 501 F3 131.2 111.3 122.1 REMARK 620 5 ADP A 195 O3B 143.6 94.7 90.4 85.2 REMARK 620 6 ADP A 195 O2B 159.9 123.7 91.1 52.9 38.9 REMARK 620 7 C5P A 196 O3P 48.8 93.9 92.4 82.5 166.9 128.2 REMARK 620 8 C5P A 196 O2P 75.0 132.1 74.8 65.8 130.6 93.5 38.8 REMARK 620 9 HOH A 198 O 115.3 159.1 74.2 47.9 86.6 49.9 81.8 44.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 195 O2B REMARK 620 2 HOH A 198 O 82.0 REMARK 620 3 HOH A 215 O 163.8 82.2 REMARK 620 4 HOH A 220 O 97.9 176.3 97.6 REMARK 620 5 HOH A 227 O 102.6 86.8 80.0 96.8 REMARK 620 6 AF3 A 501 F3 87.0 72.3 84.9 104.0 155.8 REMARK 620 7 AF3 A 501 AL 73.7 67.2 96.9 109.2 154.0 13.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF3 A 501 DBREF 3UKD A 1 194 UNP P20425 KCY_DICDI 1 194 SEQRES 1 A 194 MET GLU LYS SER LYS PRO ASN VAL VAL PHE VAL LEU GLY SEQRES 2 A 194 GLY PRO GLY SER GLY LYS GLY THR GLN CYS ALA ASN ILE SEQRES 3 A 194 VAL ARG ASP PHE GLY TRP VAL HIS LEU SER ALA GLY ASP SEQRES 4 A 194 LEU LEU ARG GLN GLU GLN GLN SER GLY SER LYS ASP GLY SEQRES 5 A 194 GLU MET ILE ALA THR MET ILE LYS ASN GLY GLU ILE VAL SEQRES 6 A 194 PRO SER ILE VAL THR VAL LYS LEU LEU LYS ASN ALA ILE SEQRES 7 A 194 ASP ALA ASN GLN GLY LYS ASN PHE LEU VAL ASP GLY PHE SEQRES 8 A 194 PRO ARG ASN GLU GLU ASN ASN ASN SER TRP GLU GLU ASN SEQRES 9 A 194 MET LYS ASP PHE VAL ASP THR LYS PHE VAL LEU PHE PHE SEQRES 10 A 194 ASP CYS PRO GLU GLU VAL MET THR GLN ARG LEU LEU LYS SEQRES 11 A 194 ARG GLY GLU SER SER GLY ARG SER ASP ASP ASN ILE GLU SEQRES 12 A 194 SER ILE LYS LYS ARG PHE ASN THR PHE ASN VAL GLN THR SEQRES 13 A 194 LYS LEU VAL ILE ASP HIS TYR ASN LYS PHE ASP LYS VAL SEQRES 14 A 194 LYS ILE ILE PRO ALA ASN ARG ASP VAL ASN GLU VAL TYR SEQRES 15 A 194 ASN ASP VAL GLU ASN LEU PHE LYS SER MET GLY PHE HET MG A 500 1 HET ADP A 195 27 HET C5P A 196 21 HET AF3 A 501 4 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETNAM AF3 ALUMINUM FLUORIDE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 C5P C9 H14 N3 O8 P FORMUL 5 AF3 AL F3 FORMUL 6 HOH *154(H2 O) HELIX 1 1 LYS A 19 PHE A 30 1 12 HELIX 2 2 ALA A 37 GLN A 46 1 10 HELIX 3 3 MET A 54 ASN A 61 1 8 HELIX 4 4 SER A 67 ASN A 81 1 15 HELIX 5 5 GLU A 95 ASN A 104 1 10 HELIX 6 6 GLU A 121 GLU A 133 1 13 HELIX 7 7 ILE A 142 LYS A 165 1 24 HELIX 8 8 VAL A 178 SER A 191 1 14 SHEET 1 A 5 VAL A 33 SER A 36 0 SHEET 2 A 5 PHE A 86 ASP A 89 1 N LEU A 87 O VAL A 33 SHEET 3 A 5 PRO A 6 GLY A 13 1 N VAL A 9 O PHE A 86 SHEET 4 A 5 VAL A 109 ASP A 118 1 N ASP A 110 O PRO A 6 SHEET 5 A 5 VAL A 169 PRO A 173 1 N LYS A 170 O VAL A 114 LINK NH2 ARG A 148 AL AF3 A 501 1555 1555 3.41 LINK O2B ADP A 195 MG MG A 500 1555 1555 2.19 LINK O3B ADP A 195 AL AF3 A 501 1555 1555 2.02 LINK O2B ADP A 195 AL AF3 A 501 1555 1555 3.65 LINK O3P C5P A 196 AL AF3 A 501 1555 1555 2.21 LINK O2P C5P A 196 AL AF3 A 501 1555 1555 3.70 LINK O HOH A 198 MG MG A 500 1555 1555 2.38 LINK O HOH A 198 AL AF3 A 501 1555 1555 3.46 LINK O HOH A 215 MG MG A 500 1555 1555 2.27 LINK O HOH A 220 MG MG A 500 1555 1555 2.03 LINK O HOH A 227 MG MG A 500 1555 1555 2.26 LINK MG MG A 500 F3 AF3 A 501 1555 1555 2.12 LINK MG MG A 500 AL AF3 A 501 1555 1555 3.60 CISPEP 1 PHE A 91 PRO A 92 0 4.82 SITE 1 AC1 6 ADP A 195 HOH A 198 HOH A 215 HOH A 220 SITE 2 AC1 6 HOH A 227 AF3 A 501 SITE 1 AC2 20 GLY A 16 SER A 17 GLY A 18 LYS A 19 SITE 2 AC2 20 GLY A 20 THR A 21 ARG A 127 ARG A 131 SITE 3 AC2 20 ARG A 176 VAL A 178 HOH A 198 HOH A 216 SITE 4 AC2 20 HOH A 220 HOH A 232 MG A 500 AF3 A 501 SITE 5 AC2 20 HOH A 778 HOH A 848 HOH A 891 HOH A 892 SITE 1 AC3 21 GLY A 38 LEU A 41 ARG A 42 ILE A 59 SITE 2 AC3 21 GLU A 63 ILE A 64 VAL A 65 GLY A 90 SITE 3 AC3 21 PHE A 91 ARG A 93 ASN A 97 ARG A 137 SITE 4 AC3 21 ASP A 139 ARG A 148 HOH A 198 HOH A 200 SITE 5 AC3 21 HOH A 208 HOH A 212 HOH A 215 AF3 A 501 SITE 6 AC3 21 HOH A 727 SITE 1 AC4 11 PRO A 15 LYS A 19 ARG A 93 ARG A 131 SITE 2 AC4 11 ARG A 137 ARG A 148 ADP A 195 C5P A 196 SITE 3 AC4 11 HOH A 198 HOH A 215 MG A 500 CRYST1 78.800 78.800 100.700 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009930 0.00000