PDB Short entry for 3UMH HEADER METAL BINDING PROTEIN 13-NOV-11 3UMH TITLE X-RAY STRUCTURE OF THE E2 DOMAIN OF THE HUMAN AMYLOID PRECURSOR TITLE 2 PROTEIN (APP) IN COMPLEX WITH CADMIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN AMYLOID PRECURSOR PROTEIN E2 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS METAL BINDING SITE, METAL BINDING, CELL SURFACE, SECRETORY PATHWAY, KEYWDS 2 METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.O.DAHMS,I.KONNIG,D.ROESER,K.H.GUHRS,M.E.THAN REVDAT 3 28-FEB-24 3UMH 1 REMARK SEQADV LINK REVDAT 2 22-FEB-12 3UMH 1 JRNL REVDAT 1 25-JAN-12 3UMH 0 JRNL AUTH S.O.DAHMS,I.KONNIG,D.ROESER,K.H.GUHRS,M.C.MAYER,D.KADEN, JRNL AUTH 2 G.MULTHAUP,M.E.THAN JRNL TITL METAL BINDING DICTATES CONFORMATION AND FUNCTION OF THE JRNL TITL 2 AMYLOID PRECURSOR PROTEIN (APP) E2 DOMAIN. JRNL REF J.MOL.BIOL. V. 416 438 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22245578 JRNL DOI 10.1016/J.JMB.2011.12.057 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 647 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.093 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000068938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM HEPES, 1 M SODIUM ACETATE, 10 REMARK 280 MM MGCL2, 50 MM CDSO4, PH 6.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.10750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.66125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.55375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 294 REMARK 465 SER A 295 REMARK 465 THR A 296 REMARK 465 PRO A 297 REMARK 465 ASP A 298 REMARK 465 ALA A 299 REMARK 465 VAL A 300 REMARK 465 ASP A 301 REMARK 465 LYS A 302 REMARK 465 TYR A 303 REMARK 465 LEU A 304 REMARK 465 GLU A 305 REMARK 465 THR A 306 REMARK 465 PRO A 307 REMARK 465 GLY A 308 REMARK 465 ASP A 309 REMARK 465 GLU A 310 REMARK 465 ASN A 311 REMARK 465 GLU A 312 REMARK 465 LYS A 493 REMARK 465 GLU A 494 REMARK 465 GLN A 495 REMARK 465 ASN A 496 REMARK 465 TYR A 497 REMARK 465 SER A 498 REMARK 465 ASP A 499 REMARK 465 ASP A 500 REMARK 465 ILE A 501 REMARK 465 GLU A 502 REMARK 465 GLY A 503 REMARK 465 ARG A 504 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 317 CG CD OE1 NE2 REMARK 480 LYS A 318 CG CD CE NZ REMARK 480 LYS A 320 CD CE NZ REMARK 480 GLU A 324 CG CD OE1 OE2 REMARK 480 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 339 CG CD OE1 OE2 REMARK 480 GLN A 344 O CG CD OE1 NE2 REMARK 480 LYS A 346 CG CD CE NZ REMARK 480 ASN A 347 O CB CG OD1 ND2 REMARK 480 LEU A 348 CD1 CD2 REMARK 480 LYS A 350 CE NZ REMARK 480 ASP A 352 CG OD1 OD2 REMARK 480 LYS A 354 CD CE NZ REMARK 480 GLN A 358 CD OE1 NE2 REMARK 480 LYS A 363 CE NZ REMARK 480 GLN A 376 OE1 NE2 REMARK 480 GLN A 377 OE1 NE2 REMARK 480 LEU A 378 CD1 CD2 REMARK 480 GLU A 380 CD OE1 OE2 REMARK 480 ARG A 393 NE CZ NH1 NH2 REMARK 480 LYS A 428 CD CE NZ REMARK 480 GLN A 431 CD OE1 NE2 REMARK 480 ARG A 441 CZ NH1 NH2 REMARK 480 ARG A 452 CZ NH1 NH2 REMARK 480 GLN A 454 CD OE1 NE2 REMARK 480 ARG A 460 NE CZ NH1 NH2 REMARK 480 GLU A 464 CD OE1 OE2 REMARK 480 ASN A 467 OD1 ND2 REMARK 480 GLN A 468 OE1 NE2 REMARK 480 SER A 471 OG REMARK 480 GLU A 481 CG CD OE1 OE2 REMARK 480 GLN A 484 OE1 NE2 REMARK 480 GLN A 492 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 458 CD CD A 2 1.76 REMARK 500 OE2 GLU A 368 O HOH A 777 1.84 REMARK 500 OE1 GLU A 387 CD CD A 2 1.96 REMARK 500 OD2 ASP A 429 CD CD A 2 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 486 CD CD A 3 4525 2.04 REMARK 500 OE1 GLU A 329 CD CD A 8 1465 2.08 REMARK 500 ND1 HIS A 414 CD CD A 6 4525 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 344 30.64 -68.52 REMARK 500 ALA A 345 -7.45 -147.76 REMARK 500 ASN A 347 49.34 -73.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 3 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 444 OD2 REMARK 620 2 ASP A 444 OD1 52.8 REMARK 620 3 HOH A 787 O 100.3 84.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 4 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 439 NE2 REMARK 620 2 ACT A 601 OXT 147.1 REMARK 620 3 ACT A 601 O 89.6 58.2 REMARK 620 4 HOH A 774 O 88.8 106.9 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 5 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 327 NE2 REMARK 620 2 GLU A 368 OE1 102.3 REMARK 620 3 GLU A 368 OE2 81.3 53.0 REMARK 620 4 HOH A 718 O 117.8 98.7 150.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 6 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 362 OE2 REMARK 620 2 GLU A 362 OE1 52.8 REMARK 620 3 GLU A 365 OE1 96.0 93.3 REMARK 620 4 GLU A 365 OE2 126.4 83.3 53.0 REMARK 620 5 ACT A 602 O 130.7 174.3 82.0 91.3 REMARK 620 6 ACT A 602 OXT 75.3 127.9 97.0 140.7 56.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 7 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 359 ND1 REMARK 620 2 HOH A 778 O 90.5 REMARK 620 3 HOH A 779 O 112.4 145.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UMI RELATED DB: PDB REMARK 900 RELATED ID: 3UMK RELATED DB: PDB DBREF 3UMH A 295 500 UNP P05067 A4_HUMAN 370 575 SEQADV 3UMH MET A 294 UNP P05067 INITIATING METHIONINE SEQADV 3UMH ILE A 501 UNP P05067 EXPRESSION TAG SEQADV 3UMH GLU A 502 UNP P05067 EXPRESSION TAG SEQADV 3UMH GLY A 503 UNP P05067 EXPRESSION TAG SEQADV 3UMH ARG A 504 UNP P05067 EXPRESSION TAG SEQRES 1 A 211 MET SER THR PRO ASP ALA VAL ASP LYS TYR LEU GLU THR SEQRES 2 A 211 PRO GLY ASP GLU ASN GLU HIS ALA HIS PHE GLN LYS ALA SEQRES 3 A 211 LYS GLU ARG LEU GLU ALA LYS HIS ARG GLU ARG MET SER SEQRES 4 A 211 GLN VAL MET ARG GLU TRP GLU GLU ALA GLU ARG GLN ALA SEQRES 5 A 211 LYS ASN LEU PRO LYS ALA ASP LYS LYS ALA VAL ILE GLN SEQRES 6 A 211 HIS PHE GLN GLU LYS VAL GLU SER LEU GLU GLN GLU ALA SEQRES 7 A 211 ALA ASN GLU ARG GLN GLN LEU VAL GLU THR HIS MET ALA SEQRES 8 A 211 ARG VAL GLU ALA MET LEU ASN ASP ARG ARG ARG LEU ALA SEQRES 9 A 211 LEU GLU ASN TYR ILE THR ALA LEU GLN ALA VAL PRO PRO SEQRES 10 A 211 ARG PRO ARG HIS VAL PHE ASN MET LEU LYS LYS TYR VAL SEQRES 11 A 211 ARG ALA GLU GLN LYS ASP ARG GLN HIS THR LEU LYS HIS SEQRES 12 A 211 PHE GLU HIS VAL ARG MET VAL ASP PRO LYS LYS ALA ALA SEQRES 13 A 211 GLN ILE ARG SER GLN VAL MET THR HIS LEU ARG VAL ILE SEQRES 14 A 211 TYR GLU ARG MET ASN GLN SER LEU SER LEU LEU TYR ASN SEQRES 15 A 211 VAL PRO ALA VAL ALA GLU GLU ILE GLN ASP GLU VAL ASP SEQRES 16 A 211 GLU LEU LEU GLN LYS GLU GLN ASN TYR SER ASP ASP ILE SEQRES 17 A 211 GLU GLY ARG HET ACT A 601 4 HET ACT A 602 4 HET CD A 1 3 HET CD A 2 2 HET CD A 3 1 HET CD A 4 1 HET CD A 5 1 HET CD A 6 1 HET CD A 7 1 HET CD A 8 1 HET CD A 9 1 HETNAM ACT ACETATE ION HETNAM CD CADMIUM ION FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 CD 9(CD 2+) FORMUL 13 HOH *95(H2 O) HELIX 1 1 HIS A 313 GLN A 344 1 32 HELIX 2 2 PRO A 349 GLN A 406 1 58 HELIX 3 3 ARG A 411 ASP A 444 1 34 HELIX 4 4 ASP A 444 LEU A 472 1 29 HELIX 5 5 LEU A 473 ASN A 475 5 3 HELIX 6 6 VAL A 476 GLN A 492 1 17 LINK CD CD A 3 OD2 ASP A 444 1555 1555 2.34 LINK CD CD A 3 OD1 ASP A 444 1555 1555 2.62 LINK CD CD A 3 O HOH A 787 1555 1555 2.30 LINK CD CD A 4 NE2 HIS A 439 1555 1555 2.20 LINK CD CD A 4 OXT ACT A 601 1555 1555 2.13 LINK CD CD A 4 O ACT A 601 1555 1555 2.37 LINK CD CD A 4 O HOH A 774 1555 1555 1.90 LINK CD CD A 5 NE2 HIS A 327 1555 1555 2.18 LINK CD CD A 5 OE1 GLU A 368 1555 1555 2.43 LINK CD CD A 5 OE2 GLU A 368 1555 1555 2.47 LINK CD CD A 5 O HOH A 718 1555 1555 2.30 LINK CD CD A 6 OE2 GLU A 362 1555 1555 2.44 LINK CD CD A 6 OE1 GLU A 362 1555 1555 2.48 LINK CD CD A 6 OE1 GLU A 365 1555 1555 2.35 LINK CD CD A 6 OE2 GLU A 365 1555 1555 2.56 LINK CD CD A 6 O ACT A 602 1555 1555 2.04 LINK CD CD A 6 OXT ACT A 602 1555 1555 2.49 LINK CD CD A 7 ND1 HIS A 359 1555 1555 2.12 LINK CD CD A 7 O HOH A 778 1555 1555 2.15 LINK CD CD A 7 O HOH A 779 1555 1555 1.89 LINK CD CD A 8 OD1 ASP A 488 1555 1555 2.15 CISPEP 1 VAL A 408 PRO A 409 0 0.06 SITE 1 AC1 3 CD A 4 GLU A 399 HIS A 439 SITE 1 AC2 4 CD A 6 GLU A 362 GLU A 365 HOH A 736 SITE 1 AC3 4 HIS A 313 HIS A 382 HIS A 432 HIS A 436 SITE 1 AC4 6 HOH A 33 GLU A 387 ASN A 391 ASP A 429 SITE 2 AC4 6 THR A 433 HIS A 458 SITE 1 AC5 2 ASP A 444 HOH A 787 SITE 1 AC6 4 GLU A 399 HIS A 439 ACT A 601 HOH A 774 SITE 1 AC7 4 HIS A 327 GLU A 368 ASP A 392 HOH A 718 SITE 1 AC8 3 GLU A 362 GLU A 365 ACT A 602 SITE 1 AC9 3 HIS A 359 HOH A 778 HOH A 779 SITE 1 BC1 3 GLU A 329 ASP A 488 HOH A 768 SITE 1 BC2 1 GLU A 321 CRYST1 39.692 39.692 126.215 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007923 0.00000