PDB Short entry for 3UQA HEADER ISOMERASE, PROTEIN BINDING 19-NOV-11 3UQA TITLE CRYSTAL STRUCTURE OF A SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE TITLE 2 WITH SURFACE MUTATION A54E FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED TITLE 3 WITH FK506 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3, PEPTIDYL-PROLYL CIS-TRANS COMPND 3 ISOMERASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: Q12306 RESIDUES 13-98, Q3JK38 RESIDUES 2-113; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: FUSION PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE, BURKHOLDERIA SOURCE 3 PSEUDOMALLEI; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292, 320372; SOURCE 6 STRAIN: 1710B, S288C; SOURCE 7 GENE: BURPS1710B_A0907, SMT3, YDR510W, D9719.15; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28-HISSMT KEYWDS SSGCID, ISOMERASE, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 2 DISEASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 13-SEP-23 3UQA 1 REMARK SEQADV REVDAT 4 23-AUG-17 3UQA 1 SOURCE REMARK REVDAT 3 19-MAR-14 3UQA 1 REMARK REVDAT 2 12-MAR-14 3UQA 1 JRNL REVDAT 1 07-DEC-11 3UQA 0 JRNL AUTH D.W.BEGLEY,D.FOX,D.JENNER,C.JULI,P.G.PIERCE,J.ABENDROTH, JRNL AUTH 2 M.MURUTHI,K.SAFFORD,V.ANDERSON,K.ATKINS,S.R.BARNES,S.O.MOEN, JRNL AUTH 3 A.C.RAYMOND,R.STACY,P.J.MYLER,B.L.STAKER,N.J.HARMER, JRNL AUTH 4 I.H.NORVILLE,U.HOLZGRABE,M.SARKAR-TYSON,T.E.EDWARDS, JRNL AUTH 5 D.D.LORIMER JRNL TITL A STRUCTURAL BIOLOGY APPROACH ENABLES THE DEVELOPMENT OF JRNL TITL 2 ANTIMICROBIALS TARGETING BACTERIAL IMMUNOPHILINS. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 58 1458 2014 JRNL REFN ISSN 0066-4804 JRNL PMID 24366729 JRNL DOI 10.1128/AAC.01875-13 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1797 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1544 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1045 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2096 ; 1.553 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2562 ; 0.911 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 197 ; 6.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;26.590 ;24.531 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 250 ;13.462 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.034 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1718 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 301 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -76 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7867 -5.2506 9.5991 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0349 REMARK 3 T33: 0.0151 T12: -0.0123 REMARK 3 T13: -0.0092 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.9898 L22: 2.5973 REMARK 3 L33: 2.5153 L12: -0.0209 REMARK 3 L13: 0.5440 L23: 0.1884 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: -0.0457 S13: 0.0122 REMARK 3 S21: -0.0938 S22: -0.0143 S23: 0.0201 REMARK 3 S31: 0.0088 S32: -0.0719 S33: -0.0165 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5097 -21.8266 23.5555 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: 0.0771 REMARK 3 T33: 0.0882 T12: -0.0044 REMARK 3 T13: 0.0333 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.5537 L22: 1.9100 REMARK 3 L33: 1.9284 L12: -0.1386 REMARK 3 L13: 0.2858 L23: -0.2409 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0439 S13: 0.0637 REMARK 3 S21: -0.1392 S22: -0.0333 S23: -0.2852 REMARK 3 S31: 0.0004 S32: 0.1604 S33: 0.0381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 3UQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000069074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CUT SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27730 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.970 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER, REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 3UF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 226422. JCSG REMARK 280 WELL A9. 0.2M AMMONIUM CHLORIDE, 20.0% W/V PEG3500, 30% PEG400 REMARK 280 CRYO. BUPSA.00130.A.D220 PD00197 19.3MG/ML., PH 7.00, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.15500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.15500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -95 REMARK 465 GLY A -94 REMARK 465 HIS A -93 REMARK 465 HIS A -92 REMARK 465 HIS A -91 REMARK 465 HIS A -90 REMARK 465 HIS A -89 REMARK 465 HIS A -88 REMARK 465 SER A -87 REMARK 465 GLY A -86 REMARK 465 GLU A -85 REMARK 465 VAL A -84 REMARK 465 LYS A -83 REMARK 465 PRO A -82 REMARK 465 GLU A -81 REMARK 465 VAL A -80 REMARK 465 LYS A -79 REMARK 465 PRO A -78 REMARK 465 GLU A -77 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A -44 CG CD CE NZ REMARK 470 GLU A -39 CG CD OE1 OE2 REMARK 470 ASP A -37 CG OD1 OD2 REMARK 470 GLN A -3 CG CD OE1 NE2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A -13 127.09 -39.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FK5 A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 116 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KEO RELATED DB: PDB REMARK 900 RELATED ID: 2L2S RELATED DB: PDB REMARK 900 RELATED ID: 2KO7 RELATED DB: PDB REMARK 900 RELATED ID: 3UF8 RELATED DB: PDB REMARK 900 RELATED ID: 16491 RELATED DB: BMRB REMARK 900 RELATED ID: 16406 RELATED DB: BMRB REMARK 900 RELATED ID: 17151 RELATED DB: BMRB REMARK 900 RELATED ID: SSGCID-BUPSA.00130.A RELATED DB: TARGETTRACK DBREF 3UQA A -85 0 UNP Q12306 SMT3_YEAST 13 98 DBREF 3UQA A 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 SEQADV 3UQA MET A -95 UNP Q12306 EXPRESSION TAG SEQADV 3UQA GLY A -94 UNP Q12306 EXPRESSION TAG SEQADV 3UQA HIS A -93 UNP Q12306 EXPRESSION TAG SEQADV 3UQA HIS A -92 UNP Q12306 EXPRESSION TAG SEQADV 3UQA HIS A -91 UNP Q12306 EXPRESSION TAG SEQADV 3UQA HIS A -90 UNP Q12306 EXPRESSION TAG SEQADV 3UQA HIS A -89 UNP Q12306 EXPRESSION TAG SEQADV 3UQA HIS A -88 UNP Q12306 EXPRESSION TAG SEQADV 3UQA SER A -87 UNP Q12306 EXPRESSION TAG SEQADV 3UQA GLY A -86 UNP Q12306 EXPRESSION TAG SEQADV 3UQA SER A 1 UNP Q12306 LINKER SEQADV 3UQA GLU A 54 UNP Q3JK38 ALA 54 ENGINEERED MUTATION SEQRES 1 A 209 MET GLY HIS HIS HIS HIS HIS HIS SER GLY GLU VAL LYS SEQRES 2 A 209 PRO GLU VAL LYS PRO GLU THR HIS ILE ASN LEU LYS VAL SEQRES 3 A 209 SER ASP GLY SER SER GLU ILE PHE PHE LYS ILE LYS LYS SEQRES 4 A 209 THR THR PRO LEU ARG ARG LEU MET GLU ALA PHE ALA LYS SEQRES 5 A 209 ARG GLN GLY LYS GLU MET ASP SER LEU ARG PHE LEU TYR SEQRES 6 A 209 ASP GLY ILE ARG ILE GLN ALA ASP GLN THR PRO GLU ASP SEQRES 7 A 209 LEU ASP MET GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG SEQRES 8 A 209 GLU GLN ILE GLY GLY SER THR VAL VAL THR THR GLU SER SEQRES 9 A 209 GLY LEU LYS TYR GLU ASP LEU THR GLU GLY SER GLY ALA SEQRES 10 A 209 GLU ALA ARG ALA GLY GLN THR VAL SER VAL HIS TYR THR SEQRES 11 A 209 GLY TRP LEU THR ASP GLY GLN LYS PHE ASP SER SER LYS SEQRES 12 A 209 ASP ARG ASN ASP PRO PHE GLU PHE VAL LEU GLY GLY GLY SEQRES 13 A 209 MET VAL ILE LYS GLY TRP ASP GLU GLY VAL GLN GLY MET SEQRES 14 A 209 LYS VAL GLY GLY VAL ARG ARG LEU THR ILE PRO PRO GLN SEQRES 15 A 209 LEU GLY TYR GLY ALA ARG GLY ALA GLY GLY VAL ILE PRO SEQRES 16 A 209 PRO ASN ALA THR LEU VAL PHE GLU VAL GLU LEU LEU ASP SEQRES 17 A 209 VAL HET FK5 A 114 57 HET PEG A 115 7 HET CL A 116 1 HETNAM FK5 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETSYN FK5 K506 FORMUL 2 FK5 C44 H69 N O12 FORMUL 3 PEG C4 H10 O3 FORMUL 4 CL CL 1- FORMUL 5 HOH *156(H2 O) HELIX 1 1 LEU A -53 GLN A -42 1 12 HELIX 2 2 GLU A -39 LEU A -35 5 5 HELIX 3 3 THR A -21 ASP A -16 1 6 HELIX 4 4 LYS A 47 ASN A 50 5 4 HELIX 5 5 ILE A 63 GLN A 71 1 9 HELIX 6 6 PRO A 84 GLY A 88 5 5 SHEET 1 A 5 GLU A -64 LYS A -58 0 SHEET 2 A 5 HIS A -75 SER A -69 -1 N VAL A -70 O ILE A -63 SHEET 3 A 5 ASP A -11 HIS A -6 1 O ILE A -9 N LYS A -71 SHEET 4 A 5 ARG A -34 TYR A -31 -1 N ARG A -34 O HIS A -6 SHEET 5 A 5 ILE A -28 ARG A -27 -1 O ILE A -28 N TYR A -31 SHEET 1 B 6 VAL A 4 THR A 5 0 SHEET 2 B 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 B 6 VAL A 78 ILE A 83 -1 O ARG A 80 N GLU A 13 SHEET 4 B 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 B 6 THR A 28 LEU A 37 -1 N HIS A 32 O GLU A 109 SHEET 6 B 6 LYS A 42 SER A 45 -1 O ASP A 44 N GLY A 35 SHEET 1 C 6 VAL A 4 THR A 5 0 SHEET 2 C 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 C 6 VAL A 78 ILE A 83 -1 O ARG A 80 N GLU A 13 SHEET 4 C 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 C 6 THR A 28 LEU A 37 -1 N HIS A 32 O GLU A 109 SHEET 6 C 6 PHE A 53 VAL A 56 -1 O PHE A 53 N VAL A 31 SITE 1 AC1 15 GLY A 26 TYR A 33 PHE A 43 ASP A 44 SITE 2 AC1 15 PHE A 53 GLY A 59 MET A 61 VAL A 62 SITE 3 AC1 15 ILE A 63 TRP A 66 GLY A 88 TYR A 89 SITE 4 AC1 15 PHE A 106 HOH A 202 HOH A 203 SITE 1 AC2 5 GLY A 26 GLN A 27 THR A 28 ASN A 50 SITE 2 AC2 5 VAL A 113 SITE 1 AC3 5 ASP A -23 ARG A -27 ARG A -52 HOH A 120 SITE 2 AC3 5 HOH A 143 CRYST1 96.310 31.280 74.320 90.00 121.57 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010383 0.000000 0.006381 0.00000 SCALE2 0.000000 0.031969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015793 0.00000