PDB Short entry for 3URZ HEADER PROTEIN BINDING 22-NOV-11 3URZ TITLE CRYSTAL STRUCTURE OF A PUTATIVE PROTEIN BINDING PROTEIN (BACOVA_03105) TITLE 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 2.19 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-227; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 ATCC: 8483; SOURCE 5 GENE: BACOVA_03105; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TETRATRICOPEPTIDE REPEATS (TPR) CONTAINING PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3URZ 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3URZ 1 REMARK REVDAT 2 24-DEC-14 3URZ 1 TITLE REVDAT 1 14-DEC-11 3URZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACOVA_03105) JRNL TITL 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 2.19 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 29857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1508 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1572 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -1.12000 REMARK 3 B33 (A**2) : 1.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3371 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2335 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4537 ; 1.415 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5703 ; 1.197 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 2.514 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;23.789 ;24.817 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ; 9.205 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;11.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 504 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3712 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 22 A 226 5 REMARK 3 1 B 22 B 226 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1193 ; 0.280 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1447 ; 0.510 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1193 ; 4.540 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1447 ; 6.740 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7040 12.3970 137.2460 REMARK 3 T TENSOR REMARK 3 T11: 1.2367 T22: 0.9996 REMARK 3 T33: 0.2796 T12: 0.0776 REMARK 3 T13: -0.1396 T23: -0.0687 REMARK 3 L TENSOR REMARK 3 L11: 2.1220 L22: 1.9500 REMARK 3 L33: 7.2075 L12: 0.3181 REMARK 3 L13: 1.0303 L23: -1.5269 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: -0.6876 S13: 0.0232 REMARK 3 S21: 0.2450 S22: -0.0894 S23: -0.1848 REMARK 3 S31: 0.4240 S32: 0.3378 S33: 0.1175 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 226 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1620 14.6590 216.2390 REMARK 3 T TENSOR REMARK 3 T11: 0.3396 T22: 0.4930 REMARK 3 T33: 0.0899 T12: -0.0197 REMARK 3 T13: -0.0583 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 2.2149 L22: 2.1768 REMARK 3 L33: 4.5199 L12: -0.7328 REMARK 3 L13: -0.9272 L23: 1.0643 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: 0.6426 S13: 0.0129 REMARK 3 S21: -0.3567 S22: -0.1266 S23: 0.0345 REMARK 3 S31: 0.2697 S32: -0.1636 S33: 0.0307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. PRESENCE OF ZINC IN CRYSTALLIZATION CONDITION REMARK 3 AND ANOMALOUS DIFFERENCE FOURIERS SUPPORT THE MODELING OF ZINC REMARK 3 (ZN) IONS. 7. PEG FRAGMENT (PG4) AND 1,2-ETHANEDIOL (EDO) REMARK 3 MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE REMARK 3 MODELED. REMARK 4 REMARK 4 3URZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.93 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.98021,0.97963 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MAY 10, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 29.581 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20 M ZINC ACETATE, 16.40 % REMARK 280 POLYETHYLENE GLYCOL 8000, 0.1M MES PH 5.93, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.79850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 21 REMARK 465 LYS A 168 REMARK 465 LEU A 169 REMARK 465 SER A 170 REMARK 465 ARG A 227 REMARK 465 GLY B 0 REMARK 465 ARG B 227 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 TYR A 166 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 179 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 LYS B 97 CE NZ REMARK 470 GLU B 98 CD OE1 OE2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 ASP B 182 CG OD1 OD2 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 38 69.41 -108.68 REMARK 500 ASN B 53 98.41 -160.58 REMARK 500 SER B 170 -53.58 -127.74 REMARK 500 SER B 171 -61.90 -139.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 B 300 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 250 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 111 OE2 REMARK 620 2 GLU A 115 OE2 115.9 REMARK 620 3 HOH A 302 O 75.2 135.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 260 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 137 OE2 REMARK 620 2 ASP A 139 OD1 113.7 REMARK 620 3 HOH A 303 O 93.5 84.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 250 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 111 OE2 REMARK 620 2 GLU B 115 OE2 111.4 REMARK 620 3 HOH B 304 O 101.9 105.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 260 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 137 OE2 REMARK 620 2 ASP B 139 OD1 97.6 REMARK 620 3 EDO B 301 O2 112.5 108.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 416729 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 21-227 OF THE TARGET REMARK 999 SEQUENCE. DBREF 3URZ A 21 227 UNP A7LZ30 A7LZ30_BACOV 21 227 DBREF 3URZ B 21 227 UNP A7LZ30 A7LZ30_BACOV 21 227 SEQADV 3URZ GLY A 0 UNP A7LZ30 EXPRESSION TAG SEQADV 3URZ GLY B 0 UNP A7LZ30 EXPRESSION TAG SEQRES 1 A 208 GLY GLN SER VAL ASP GLU MSE LEU GLN LYS VAL SER ALA SEQRES 2 A 208 ALA ILE GLU ALA GLY GLN ASN GLY GLN ALA VAL SER TYR SEQRES 3 A 208 PHE ARG GLN THR ILE ALA LEU ASN ILE ASP ARG THR GLU SEQRES 4 A 208 MSE TYR TYR TRP THR ASN VAL ASP LYS ASN SER GLU ILE SEQRES 5 A 208 SER SER LYS LEU ALA THR GLU LEU ALA LEU ALA TYR LYS SEQRES 6 A 208 LYS ASN ARG ASN TYR ASP LYS ALA TYR LEU PHE TYR LYS SEQRES 7 A 208 GLU LEU LEU GLN LYS ALA PRO ASN ASN VAL ASP CSX LEU SEQRES 8 A 208 GLU ALA CYS ALA GLU MSE GLN VAL CYS ARG GLY GLN GLU SEQRES 9 A 208 LYS ASP ALA LEU ARG MSE TYR GLU LYS ILE LEU GLN LEU SEQRES 10 A 208 GLU ALA ASP ASN LEU ALA ALA ASN ILE PHE LEU GLY ASN SEQRES 11 A 208 TYR TYR TYR LEU THR ALA GLU GLN GLU LYS LYS LYS LEU SEQRES 12 A 208 GLU THR ASP TYR LYS LYS LEU SER SER PRO THR LYS MSE SEQRES 13 A 208 GLN TYR ALA ARG TYR ARG ASP GLY LEU SER LYS LEU PHE SEQRES 14 A 208 THR THR ARG TYR GLU LYS ALA ARG ASN SER LEU GLN LYS SEQRES 15 A 208 VAL ILE LEU ARG PHE PRO SER THR GLU ALA GLN LYS THR SEQRES 16 A 208 LEU ASP LYS ILE LEU ARG ILE GLU LYS GLU VAL ASN ARG SEQRES 1 B 208 GLY GLN SER VAL ASP GLU MSE LEU GLN LYS VAL SER ALA SEQRES 2 B 208 ALA ILE GLU ALA GLY GLN ASN GLY GLN ALA VAL SER TYR SEQRES 3 B 208 PHE ARG GLN THR ILE ALA LEU ASN ILE ASP ARG THR GLU SEQRES 4 B 208 MSE TYR TYR TRP THR ASN VAL ASP LYS ASN SER GLU ILE SEQRES 5 B 208 SER SER LYS LEU ALA THR GLU LEU ALA LEU ALA TYR LYS SEQRES 6 B 208 LYS ASN ARG ASN TYR ASP LYS ALA TYR LEU PHE TYR LYS SEQRES 7 B 208 GLU LEU LEU GLN LYS ALA PRO ASN ASN VAL ASP CSX LEU SEQRES 8 B 208 GLU ALA CYS ALA GLU MSE GLN VAL CYS ARG GLY GLN GLU SEQRES 9 B 208 LYS ASP ALA LEU ARG MSE TYR GLU LYS ILE LEU GLN LEU SEQRES 10 B 208 GLU ALA ASP ASN LEU ALA ALA ASN ILE PHE LEU GLY ASN SEQRES 11 B 208 TYR TYR TYR LEU THR ALA GLU GLN GLU LYS LYS LYS LEU SEQRES 12 B 208 GLU THR ASP TYR LYS LYS LEU SER SER PRO THR LYS MSE SEQRES 13 B 208 GLN TYR ALA ARG TYR ARG ASP GLY LEU SER LYS LEU PHE SEQRES 14 B 208 THR THR ARG TYR GLU LYS ALA ARG ASN SER LEU GLN LYS SEQRES 15 B 208 VAL ILE LEU ARG PHE PRO SER THR GLU ALA GLN LYS THR SEQRES 16 B 208 LEU ASP LYS ILE LEU ARG ILE GLU LYS GLU VAL ASN ARG MODRES 3URZ MSE A 26 MET SELENOMETHIONINE MODRES 3URZ MSE A 59 MET SELENOMETHIONINE MODRES 3URZ CSX A 109 CYS S-OXY CYSTEINE MODRES 3URZ MSE A 116 MET SELENOMETHIONINE MODRES 3URZ MSE A 129 MET SELENOMETHIONINE MODRES 3URZ MSE A 175 MET SELENOMETHIONINE MODRES 3URZ MSE B 26 MET SELENOMETHIONINE MODRES 3URZ MSE B 59 MET SELENOMETHIONINE MODRES 3URZ CSX B 109 CYS S-OXY CYSTEINE MODRES 3URZ MSE B 116 MET SELENOMETHIONINE MODRES 3URZ MSE B 129 MET SELENOMETHIONINE MODRES 3URZ MSE B 175 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 59 8 HET CSX A 109 7 HET MSE A 116 8 HET MSE A 129 8 HET MSE A 175 8 HET MSE B 26 8 HET MSE B 59 8 HET CSX B 109 7 HET MSE B 116 8 HET MSE B 129 8 HET MSE B 175 8 HET ZN A 250 1 HET ZN A 260 1 HET ZN B 250 1 HET ZN B 260 1 HET PG4 B 300 10 HET EDO B 301 4 HETNAM MSE SELENOMETHIONINE HETNAM CSX S-OXY CYSTEINE HETNAM ZN ZINC ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 ZN 4(ZN 2+) FORMUL 7 PG4 C8 H18 O5 FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *55(H2 O) HELIX 1 1 SER A 22 ALA A 36 1 15 HELIX 2 2 GLN A 38 ASN A 53 1 16 HELIX 3 3 ASN A 53 VAL A 65 1 13 HELIX 4 4 SER A 69 ASN A 86 1 18 HELIX 5 5 ASN A 88 ALA A 103 1 16 HELIX 6 6 ASN A 106 GLY A 121 1 16 HELIX 7 7 GLN A 122 GLU A 137 1 16 HELIX 8 8 ASN A 140 LYS A 167 1 28 HELIX 9 9 THR A 173 ARG A 191 1 19 HELIX 10 10 ARG A 191 ILE A 203 1 13 HELIX 11 11 SER A 208 ASN A 226 1 19 HELIX 12 12 SER B 22 ALA B 36 1 15 HELIX 13 13 GLN B 38 ASN B 53 1 16 HELIX 14 14 ASN B 53 VAL B 65 1 13 HELIX 15 15 GLU B 70 ARG B 87 1 18 HELIX 16 16 ASN B 88 ALA B 103 1 16 HELIX 17 17 ASN B 106 ARG B 120 1 15 HELIX 18 18 GLN B 122 GLU B 137 1 16 HELIX 19 19 ASN B 140 LYS B 168 1 29 HELIX 20 20 THR B 173 ARG B 191 1 19 HELIX 21 21 ARG B 191 PHE B 206 1 16 HELIX 22 22 SER B 208 ASN B 226 1 19 LINK C GLU A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N LEU A 27 1555 1555 1.34 LINK C GLU A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N TYR A 60 1555 1555 1.34 LINK C ASP A 108 N CSX A 109 1555 1555 1.34 LINK C CSX A 109 N LEU A 110 1555 1555 1.34 LINK C GLU A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N GLN A 117 1555 1555 1.34 LINK C ARG A 128 N MSE A 129 1555 1555 1.34 LINK C MSE A 129 N TYR A 130 1555 1555 1.34 LINK C LYS A 174 N MSE A 175 1555 1555 1.34 LINK C MSE A 175 N GLN A 176 1555 1555 1.34 LINK C GLU B 25 N MSE B 26 1555 1555 1.33 LINK C MSE B 26 N LEU B 27 1555 1555 1.34 LINK C GLU B 58 N MSE B 59 1555 1555 1.33 LINK C MSE B 59 N TYR B 60 1555 1555 1.34 LINK C ASP B 108 N CSX B 109 1555 1555 1.34 LINK C CSX B 109 N LEU B 110 1555 1555 1.33 LINK C GLU B 115 N MSE B 116 1555 1555 1.34 LINK C MSE B 116 N GLN B 117 1555 1555 1.33 LINK C ARG B 128 N MSE B 129 1555 1555 1.33 LINK C MSE B 129 N TYR B 130 1555 1555 1.34 LINK C LYS B 174 N MSE B 175 1555 1555 1.34 LINK C MSE B 175 N GLN B 176 1555 1555 1.34 LINK OE2 GLU A 111 ZN ZN A 250 1555 1555 2.28 LINK OE2 GLU A 115 ZN ZN A 250 1555 1555 1.97 LINK OE2 GLU A 137 ZN ZN A 260 1555 1555 2.08 LINK OD1 ASP A 139 ZN ZN A 260 1555 1555 2.46 LINK ZN ZN A 250 O HOH A 302 1555 1555 2.57 LINK ZN ZN A 260 O HOH A 303 1555 1555 1.98 LINK OE2 GLU B 111 ZN ZN B 250 1555 1555 2.05 LINK OE2 GLU B 115 ZN ZN B 250 1555 1555 2.12 LINK OE2 GLU B 137 ZN ZN B 260 1555 1555 2.06 LINK OD1 ASP B 139 ZN ZN B 260 1555 1555 2.11 LINK ZN ZN B 250 O HOH B 304 1555 1555 2.09 LINK ZN ZN B 260 O2 EDO B 301 1555 1555 2.07 CISPEP 1 SER A 171 PRO A 172 0 0.05 CISPEP 2 SER B 171 PRO B 172 0 -1.82 SITE 1 AC1 3 GLU A 111 GLU A 115 HOH A 302 SITE 1 AC2 3 GLU A 137 ASP A 139 HOH A 303 SITE 1 AC3 3 GLU B 111 GLU B 115 HOH B 304 SITE 1 AC4 3 GLU B 137 ASP B 139 EDO B 301 SITE 1 AC5 9 ILE B 54 ASP B 55 ASN B 86 ASN B 88 SITE 2 AC5 9 LYS B 102 ALA B 103 PRO B 104 ASN B 105 SITE 3 AC5 9 HOH B 356 SITE 1 AC6 5 ARG B 87 GLU B 137 ASP B 139 ZN B 260 SITE 2 AC6 5 HOH B 316 CRYST1 30.703 41.597 236.878 90.00 92.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032570 0.000000 0.001435 0.00000 SCALE2 0.000000 0.024040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004226 0.00000