PDB Short entry for 3UWW HEADER ISOMERASE 03-DEC-11 3UWW TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRIOSEPHOSPHATE ISOMERASE TITLE 2 COMPLEXED WITH 3-PHOSPHOGLYCERIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 282458; SOURCE 4 STRAIN: MRSA252; SOURCE 5 GENE: SAR0830, TPI, TPIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15 (PREP4); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TIM BARREL, ISOMERASE, CYTOSOL EXPDTA X-RAY DIFFRACTION AUTHOR S.MUKHERJEE,A.ROYCHOWDHURY,D.DUTTA,A.K.DAS REVDAT 3 08-NOV-23 3UWW 1 REMARK SEQADV REVDAT 2 26-JUN-13 3UWW 1 JRNL REVDAT 1 17-OCT-12 3UWW 0 JRNL AUTH S.MUKHERJEE,A.ROYCHOWDHURY,D.DUTTA,A.K.DAS JRNL TITL CRYSTAL STRUCTURES OF TRIOSEPHOSPHATE ISOMERASE FROM JRNL TITL 2 METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS MRSA252 PROVIDE JRNL TITL 3 STRUCTURAL INSIGHTS INTO NOVEL MODES OF LIGAND BINDING AND JRNL TITL 4 UNIQUE CONFORMATIONS OF CATALYTIC LOOP JRNL REF BIOCHIMIE V. 94 2532 2012 JRNL REFN ISSN 0300-9084 JRNL PMID 22813930 JRNL DOI 10.1016/J.BIOCHI.2012.07.001 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1412 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1908 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.35000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -2.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.113 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3891 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5261 ; 1.056 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 4.931 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;37.031 ;26.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;13.477 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 8.591 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2890 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2497 ; 0.449 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4011 ; 0.921 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1394 ; 2.411 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1250 ; 4.343 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 11 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 30 2 REMARK 3 1 B 2 B 30 2 REMARK 3 2 A 35 A 61 2 REMARK 3 2 B 35 B 61 2 REMARK 3 3 A 63 A 70 2 REMARK 3 3 B 63 B 70 2 REMARK 3 4 A 74 A 108 2 REMARK 3 4 B 74 B 108 2 REMARK 3 5 A 110 A 131 2 REMARK 3 5 B 110 B 131 2 REMARK 3 6 A 142 A 169 2 REMARK 3 6 B 142 B 169 2 REMARK 3 7 A 181 A 187 2 REMARK 3 7 B 181 B 187 2 REMARK 3 8 A 189 A 212 2 REMARK 3 8 B 189 B 212 2 REMARK 3 9 A 218 A 220 2 REMARK 3 9 B 218 B 220 2 REMARK 3 10 A 229 A 240 2 REMARK 3 10 B 229 B 240 2 REMARK 3 11 A 242 A 251 2 REMARK 3 11 B 242 B 251 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 820 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 726 ; 0.04 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 820 ; 0.38 ; 1.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 726 ; 0.44 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2096 20.3326 17.2494 REMARK 3 T TENSOR REMARK 3 T11: 0.0317 T22: 0.1379 REMARK 3 T33: 0.0740 T12: -0.0275 REMARK 3 T13: 0.0137 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6409 L22: 0.7989 REMARK 3 L33: 1.6163 L12: -0.1257 REMARK 3 L13: 0.0488 L23: -0.2655 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: -0.1555 S13: -0.0283 REMARK 3 S21: -0.0870 S22: -0.0540 S23: 0.0061 REMARK 3 S31: -0.0379 S32: 0.0025 S33: -0.0580 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 252 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9577 27.2825 -8.0442 REMARK 3 T TENSOR REMARK 3 T11: 0.0819 T22: 0.1669 REMARK 3 T33: 0.1065 T12: 0.0455 REMARK 3 T13: 0.0047 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 1.5686 L22: 0.5218 REMARK 3 L33: 1.4082 L12: 0.1376 REMARK 3 L13: -0.2847 L23: -0.2052 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.1497 S13: -0.0298 REMARK 3 S21: -0.1668 S22: 0.0302 S23: 0.0513 REMARK 3 S31: -0.1093 S32: -0.3416 S33: -0.0741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.247 REMARK 200 RESOLUTION RANGE LOW (A) : 73.125 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : 0.46600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3M9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M TRISODIUM CITRATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.02100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.29150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.29150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.53150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.29150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.29150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.51050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.29150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.29150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.53150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.29150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.29150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.51050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.02100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 178 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -144.82 48.32 REMARK 500 LYS A 14 140.09 82.42 REMARK 500 ILE A 174 31.93 -93.97 REMARK 500 THR A 176 168.47 139.14 REMARK 500 SER A 200 -98.15 -137.37 REMARK 500 LYS B 11 -145.58 47.61 REMARK 500 LYS B 14 143.98 82.31 REMARK 500 SER B 180 123.89 72.95 REMARK 500 SER B 200 -99.81 -136.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG B 255 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UWU RELATED DB: PDB REMARK 900 RELATED ID: 3UWV RELATED DB: PDB REMARK 900 RELATED ID: 3UWY RELATED DB: PDB REMARK 900 RELATED ID: 3UWZ RELATED DB: PDB REMARK 900 RELATED ID: 3M9Y RELATED DB: PDB DBREF 3UWW A 1 253 UNP Q6GIL6 TPIS_STAAR 1 253 DBREF 3UWW B 1 253 UNP Q6GIL6 TPIS_STAAR 1 253 SEQADV 3UWW HIS A -7 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS A -6 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS A -5 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS A -4 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS A -3 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS A -2 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW GLY A -1 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW SER A 0 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS B -7 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS B -6 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS B -5 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS B -4 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS B -3 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW HIS B -2 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW GLY B -1 UNP Q6GIL6 EXPRESSION TAG SEQADV 3UWW SER B 0 UNP Q6GIL6 EXPRESSION TAG SEQRES 1 A 261 HIS HIS HIS HIS HIS HIS GLY SER MET ARG THR PRO ILE SEQRES 2 A 261 ILE ALA GLY ASN TRP LYS MET ASN LYS THR VAL GLN GLU SEQRES 3 A 261 ALA LYS ASP PHE VAL ASN ALA LEU PRO THR LEU PRO ASP SEQRES 4 A 261 SER LYS GLU VAL GLU SER VAL ILE CYS ALA PRO ALA ILE SEQRES 5 A 261 GLN LEU ASP ALA LEU THR THR ALA VAL LYS GLU GLY LYS SEQRES 6 A 261 ALA GLN GLY LEU GLU ILE GLY ALA GLN ASN THR TYR PHE SEQRES 7 A 261 GLU ASP ASN GLY ALA PHE THR GLY GLU THR SER PRO VAL SEQRES 8 A 261 ALA LEU ALA ASP LEU GLY VAL LYS TYR VAL VAL ILE GLY SEQRES 9 A 261 HIS SER GLU ARG ARG GLU LEU PHE HIS GLU THR ASP GLU SEQRES 10 A 261 GLU ILE ASN LYS LYS ALA HIS ALA ILE PHE LYS HIS GLY SEQRES 11 A 261 MET THR PRO ILE ILE CYS VAL GLY GLU THR ASP GLU GLU SEQRES 12 A 261 ARG GLU SER GLY LYS ALA ASN ASP VAL VAL GLY GLU GLN SEQRES 13 A 261 VAL LYS LYS ALA VAL ALA GLY LEU SER GLU ASP GLN LEU SEQRES 14 A 261 LYS SER VAL VAL ILE ALA TYR GLU PRO ILE TRP ALA ILE SEQRES 15 A 261 GLY THR GLY LYS SER SER THR SER GLU ASP ALA ASN GLU SEQRES 16 A 261 MET CYS ALA PHE VAL ARG GLN THR ILE ALA ASP LEU SER SEQRES 17 A 261 SER LYS GLU VAL SER GLU ALA THR ARG ILE GLN TYR GLY SEQRES 18 A 261 GLY SER VAL LYS PRO ASN ASN ILE LYS GLU TYR MET ALA SEQRES 19 A 261 GLN THR ASP ILE ASP GLY ALA LEU VAL GLY GLY ALA SER SEQRES 20 A 261 LEU LYS VAL GLU ASP PHE VAL GLN LEU LEU GLU GLY ALA SEQRES 21 A 261 LYS SEQRES 1 B 261 HIS HIS HIS HIS HIS HIS GLY SER MET ARG THR PRO ILE SEQRES 2 B 261 ILE ALA GLY ASN TRP LYS MET ASN LYS THR VAL GLN GLU SEQRES 3 B 261 ALA LYS ASP PHE VAL ASN ALA LEU PRO THR LEU PRO ASP SEQRES 4 B 261 SER LYS GLU VAL GLU SER VAL ILE CYS ALA PRO ALA ILE SEQRES 5 B 261 GLN LEU ASP ALA LEU THR THR ALA VAL LYS GLU GLY LYS SEQRES 6 B 261 ALA GLN GLY LEU GLU ILE GLY ALA GLN ASN THR TYR PHE SEQRES 7 B 261 GLU ASP ASN GLY ALA PHE THR GLY GLU THR SER PRO VAL SEQRES 8 B 261 ALA LEU ALA ASP LEU GLY VAL LYS TYR VAL VAL ILE GLY SEQRES 9 B 261 HIS SER GLU ARG ARG GLU LEU PHE HIS GLU THR ASP GLU SEQRES 10 B 261 GLU ILE ASN LYS LYS ALA HIS ALA ILE PHE LYS HIS GLY SEQRES 11 B 261 MET THR PRO ILE ILE CYS VAL GLY GLU THR ASP GLU GLU SEQRES 12 B 261 ARG GLU SER GLY LYS ALA ASN ASP VAL VAL GLY GLU GLN SEQRES 13 B 261 VAL LYS LYS ALA VAL ALA GLY LEU SER GLU ASP GLN LEU SEQRES 14 B 261 LYS SER VAL VAL ILE ALA TYR GLU PRO ILE TRP ALA ILE SEQRES 15 B 261 GLY THR GLY LYS SER SER THR SER GLU ASP ALA ASN GLU SEQRES 16 B 261 MET CYS ALA PHE VAL ARG GLN THR ILE ALA ASP LEU SER SEQRES 17 B 261 SER LYS GLU VAL SER GLU ALA THR ARG ILE GLN TYR GLY SEQRES 18 B 261 GLY SER VAL LYS PRO ASN ASN ILE LYS GLU TYR MET ALA SEQRES 19 B 261 GLN THR ASP ILE ASP GLY ALA LEU VAL GLY GLY ALA SER SEQRES 20 B 261 LEU LYS VAL GLU ASP PHE VAL GLN LEU LEU GLU GLY ALA SEQRES 21 B 261 LYS HET DTT A 255 8 HET 3PG A 254 11 HET NA B 254 1 HET 3PG B 255 11 HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM 3PG 3-PHOSPHOGLYCERIC ACID HETNAM NA SODIUM ION HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 DTT C4 H10 O2 S2 FORMUL 4 3PG 2(C3 H7 O7 P) FORMUL 5 NA NA 1+ FORMUL 7 HOH *211(H2 O) HELIX 1 1 THR A 15 LEU A 26 1 12 HELIX 2 2 PRO A 42 GLU A 55 1 14 HELIX 3 3 SER A 81 LEU A 88 1 8 HELIX 4 4 HIS A 97 PHE A 104 1 8 HELIX 5 5 THR A 107 HIS A 121 1 15 HELIX 6 6 THR A 132 SER A 138 1 7 HELIX 7 7 LYS A 140 ALA A 154 1 15 HELIX 8 8 SER A 157 VAL A 164 1 8 HELIX 9 9 THR A 181 SER A 200 1 20 HELIX 10 10 SER A 201 GLU A 206 1 6 HELIX 11 11 ASN A 220 ALA A 226 1 7 HELIX 12 12 GLY A 236 LEU A 240 5 5 HELIX 13 13 LYS A 241 ALA A 252 1 12 HELIX 14 14 THR B 15 LEU B 26 1 12 HELIX 15 15 PRO B 42 ILE B 44 5 3 HELIX 16 16 GLN B 45 GLU B 55 1 11 HELIX 17 17 SER B 81 LEU B 88 1 8 HELIX 18 18 HIS B 97 PHE B 104 1 8 HELIX 19 19 THR B 107 HIS B 121 1 15 HELIX 20 20 THR B 132 SER B 138 1 7 HELIX 21 21 LYS B 140 ALA B 154 1 15 HELIX 22 22 SER B 157 VAL B 164 1 8 HELIX 23 23 PRO B 170 ILE B 174 5 5 HELIX 24 24 THR B 181 SER B 200 1 20 HELIX 25 25 SER B 201 GLU B 206 1 6 HELIX 26 26 ASN B 220 GLN B 227 1 8 HELIX 27 27 GLY B 236 LEU B 240 5 5 HELIX 28 28 LYS B 241 ALA B 252 1 12 SHEET 1 A 9 ILE A 5 ASN A 9 0 SHEET 2 A 9 GLU A 36 ALA A 41 1 O CYS A 40 N GLY A 8 SHEET 3 A 9 GLU A 62 ALA A 65 1 O GLY A 64 N ILE A 39 SHEET 4 A 9 TYR A 92 ILE A 95 1 O VAL A 94 N ALA A 65 SHEET 5 A 9 THR A 124 VAL A 129 1 O ILE A 126 N ILE A 95 SHEET 6 A 9 VAL A 165 TYR A 168 1 O VAL A 165 N ILE A 127 SHEET 7 A 9 ARG A 209 TYR A 212 1 O GLN A 211 N ILE A 166 SHEET 8 A 9 GLY A 232 VAL A 235 1 O GLY A 232 N TYR A 212 SHEET 9 A 9 ILE A 5 ASN A 9 1 N ASN A 9 O VAL A 235 SHEET 1 B 9 ILE B 5 ASN B 9 0 SHEET 2 B 9 GLU B 36 ALA B 41 1 O CYS B 40 N GLY B 8 SHEET 3 B 9 GLU B 62 ALA B 65 1 O GLY B 64 N ILE B 39 SHEET 4 B 9 TYR B 92 ILE B 95 1 O VAL B 94 N ALA B 65 SHEET 5 B 9 THR B 124 VAL B 129 1 O CYS B 128 N ILE B 95 SHEET 6 B 9 VAL B 165 TYR B 168 1 O VAL B 165 N ILE B 127 SHEET 7 B 9 ARG B 209 TYR B 212 1 O GLN B 211 N ILE B 166 SHEET 8 B 9 GLY B 232 VAL B 235 1 O GLY B 232 N TYR B 212 SHEET 9 B 9 ILE B 5 ASN B 9 1 N ASN B 9 O VAL B 235 LINK OG1 THR B 80 NA NA B 254 1555 1555 2.27 CISPEP 1 GLY A 175 THR A 176 0 -3.80 CISPEP 2 THR B 176 GLY B 177 0 -10.48 SITE 1 AC1 7 HIS A 116 PHE A 119 LYS A 120 GLN A 160 SITE 2 AC1 7 HOH A 277 HOH A 303 HOH A 306 SITE 1 AC2 11 LYS A 11 SER A 215 VAL A 216 GLY A 236 SITE 2 AC2 11 GLY A 237 HOH A 271 HOH A 307 HOH A 310 SITE 3 AC2 11 HOH A 320 HOH A 346 HOH A 360 SITE 1 AC3 3 ALA A 43 ILE A 44 THR B 80 SITE 1 AC4 14 ASN B 9 LYS B 11 HIS B 97 GLU B 169 SITE 2 AC4 14 ILE B 174 GLY B 175 SER B 215 LEU B 234 SITE 3 AC4 14 VAL B 235 GLY B 236 GLY B 237 HOH B 294 SITE 4 AC4 14 HOH B 318 HOH B 329 CRYST1 80.583 80.583 174.042 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012410 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005746 0.00000