PDB Short entry for 3UXO HEADER TRANSFERASE, LYASE 05-DEC-11 3UXO TITLE CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA MUTATOR I260Q APOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.7, 4.2.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA POLYMERASE BETA, BER, TRANSFERASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.L.GRIDLEY,J.JAEGER REVDAT 3 28-FEB-24 3UXO 1 SEQADV REVDAT 2 28-AUG-13 3UXO 1 JRNL REVDAT 1 05-DEC-12 3UXO 0 JRNL AUTH C.L.GRIDLEY,S.RANGARAJAN,S.FIRBANK,S.DALAL,J.B.SWEASY, JRNL AUTH 2 J.JAEGER JRNL TITL STRUCTURAL CHANGES IN THE HYDROPHOBIC HINGE REGION ADVERSELY JRNL TITL 2 AFFECT THE ACTIVITY AND FIDELITY OF THE I260Q MUTATOR DNA JRNL TITL 3 POLYMERASE BETA. JRNL REF BIOCHEMISTRY V. 52 4422 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23651085 JRNL DOI 10.1021/BI301368F REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 44844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0479 - 5.0475 0.97 3061 144 0.2467 0.2643 REMARK 3 2 5.0475 - 4.0124 1.00 3108 144 0.2209 0.2818 REMARK 3 3 4.0124 - 3.5070 1.00 3093 147 0.2365 0.3367 REMARK 3 4 3.5070 - 3.1871 1.00 3069 137 0.2617 0.3225 REMARK 3 5 3.1871 - 2.9591 1.00 3074 142 0.2628 0.3343 REMARK 3 6 2.9591 - 2.7849 1.00 3049 142 0.2653 0.2977 REMARK 3 7 2.7849 - 2.6456 1.00 3077 141 0.2690 0.3526 REMARK 3 8 2.6456 - 2.5306 1.00 3076 149 0.2828 0.3483 REMARK 3 9 2.5306 - 2.4333 1.00 3039 135 0.2712 0.3232 REMARK 3 10 2.4333 - 2.3494 1.00 3089 142 0.2715 0.3379 REMARK 3 11 2.3494 - 2.2760 1.00 3046 150 0.3240 0.3961 REMARK 3 12 2.2760 - 2.2110 0.99 3041 135 0.3556 0.4338 REMARK 3 13 2.2110 - 2.1528 1.00 3045 141 0.3066 0.4000 REMARK 3 14 2.1528 - 2.1000 0.99 2981 147 0.2962 0.3470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 60.44 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.720 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.26660 REMARK 3 B22 (A**2) : -4.23700 REMARK 3 B33 (A**2) : 11.50350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14490 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5318 REMARK 3 ANGLE : 1.195 7156 REMARK 3 CHIRALITY : 0.084 780 REMARK 3 PLANARITY : 0.006 934 REMARK 3 DIHEDRAL : 19.724 2066 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR WITH REMARK 200 HORIZONTAL FOCUSING SAGITTAL REMARK 200 BEND SECOND MONOCRYSTAL WITH 4:1 REMARK 200 MAGNIFICATION RATIO AND REMARK 200 VERTICALLY FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.077 REMARK 200 RESOLUTION RANGE LOW (A) : 48.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : 0.59400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MOLECULAR REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MES, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 335 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 LYS B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 12 C REMARK 480 VAL A 20 CB REMARK 480 GLU A 21 CD REMARK 480 LYS A 27 CE REMARK 480 ASN A 28 N REMARK 480 HIS A 34 NE2 REMARK 480 TYR A 36 CE2 REMARK 480 ALA A 38 C REMARK 480 TYR A 49 CE2 REMARK 480 HIS A 51 CE1 REMARK 480 LYS A 54 N REMARK 480 LEU A 62 CG REMARK 480 ALA A 70 N REMARK 480 GLU A 71 CA REMARK 480 ILE A 73 C REMARK 480 GLU A 75 CG OE2 REMARK 480 PHE A 76 CE1 REMARK 480 ALA A 78 C REMARK 480 LYS A 81 CG REMARK 480 LEU A 82 C REMARK 480 ARG A 83 CZ REMARK 480 LYS A 84 N REMARK 480 ILE A 88 CA REMARK 480 ARG A 89 O CD CZ REMARK 480 GLN A 90 CA REMARK 480 ASP A 92 C OD1 REMARK 480 THR A 93 CA REMARK 480 LEU A 100 CA REMARK 480 LYS A 113 O REMARK 480 LEU A 114 C CG REMARK 480 VAL A 115 CG1 REMARK 480 ASP A 116 CB REMARK 480 GLU A 117 N CD REMARK 480 GLY A 118 CA REMARK 480 ILE A 119 CB REMARK 480 LEU A 122 CD1 REMARK 480 GLU A 123 CB CD REMARK 480 LEU A 125 CG REMARK 480 ARG A 126 C CD REMARK 480 GLU A 129 CG REMARK 480 ARG A 137 CZ REMARK 480 ASP A 145 OD2 REMARK 480 GLU A 147 CD REMARK 480 GLU A 165 CD REMARK 480 GLU A 172 CD REMARK 480 ASP A 190 OD1 REMARK 480 SER A 205 O REMARK 480 LEU A 210 CA REMARK 480 GLU A 216 CD REMARK 480 ARG A 222 CZ REMARK 480 SER A 243 OG REMARK 480 GLU A 247 C REMARK 480 ASN A 248 CG REMARK 480 ARG A 254 NH1 REMARK 480 ASP A 276 CG REMARK 480 LEU A 287 C REMARK 480 VAL A 303 C REMARK 480 LEU B 19 CG REMARK 480 VAL B 20 CG1 REMARK 480 GLU B 21 CG REMARK 480 GLN B 31 OE1 REMARK 480 HIS B 34 CD2 REMARK 480 LYS B 41 CD REMARK 480 TYR B 49 CZ REMARK 480 LYS B 68 C REMARK 480 ILE B 69 CG1 CD1 REMARK 480 ARG B 83 NH1 REMARK 480 ARG B 89 CZ REMARK 480 GLN B 90 N CD REMARK 480 ASP B 91 CG OD2 REMARK 480 ASP B 92 CA REMARK 480 THR B 93 N REMARK 480 SER B 94 C REMARK 480 SER B 95 CB REMARK 480 THR B 101 OG1 REMARK 480 VAL B 103 C REMARK 480 THR B 104 CA REMARK 480 ILE B 106 CG1 REMARK 480 GLY B 107 N REMARK 480 ALA B 111 CA REMARK 480 ARG B 112 N CZ REMARK 480 LYS B 113 CG REMARK 480 ASP B 116 CA REMARK 480 ILE B 119 CG1 REMARK 480 ASP B 124 OD1 REMARK 480 ASN B 128 CG REMARK 480 GLU B 129 CD REMARK 480 LEU B 132 CA REMARK 480 ASN B 133 CB OD1 REMARK 480 HIS B 134 NE2 REMARK 480 GLN B 136 N CB REMARK 480 GLU B 144 C REMARK 480 GLU B 147 CB CD REMARK 480 GLU B 153 OE1 REMARK 480 GLU B 172 OE1 REMARK 480 ILE B 174 N O REMARK 480 GLU B 186 CG REMARK 480 HIS B 197 ND1 REMARK 480 PRO B 198 CA CG REMARK 480 SER B 205 CB REMARK 480 LYS B 206 CB REMARK 480 PRO B 208 CA REMARK 480 LYS B 209 CD REMARK 480 HIS B 212 CG CE1 REMARK 480 ARG B 213 NH1 REMARK 480 GLU B 216 CD REMARK 480 LYS B 220 CE REMARK 480 VAL B 221 CG1 REMARK 480 ARG B 222 NE REMARK 480 THR B 233 OG1 REMARK 480 GLU B 244 CG REMARK 480 ASP B 246 CG REMARK 480 GLU B 247 C REMARK 480 ASN B 248 CA O REMARK 480 ARG B 253 C REMARK 480 ARG B 258 CZ REMARK 480 GLN B 260 CD REMARK 480 LYS B 262 CG REMARK 480 ASP B 263 CB CG REMARK 480 GLN B 264 CG REMARK 480 ASP B 276 OD2 REMARK 480 ILE B 277 CG1 REMARK 480 ASN B 279 C REMARK 480 LYS B 280 CD REMARK 480 ALA B 284 CB REMARK 480 LEU B 287 CA REMARK 480 GLU B 288 CG CD REMARK 480 LYS B 289 CE REMARK 480 ASN B 294 C REMARK 480 GLY B 302 C REMARK 480 THR B 304 CB REMARK 480 GLN B 317 CG REMARK 480 ASP B 321 C REMARK 480 TRP B 325 CE3 REMARK 480 ARG B 326 CZ REMARK 480 TYR B 327 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 216 O HOH B 496 1.98 REMARK 500 OH TYR B 250 O HOH B 455 1.99 REMARK 500 OD2 ASP B 192 O HOH B 499 2.06 REMARK 500 O SER A 334 O HOH A 477 2.14 REMARK 500 O GLU B 147 O HOH B 474 2.14 REMARK 500 O GLN B 324 O HOH B 457 2.16 REMARK 500 O HOH B 421 O HOH B 448 2.16 REMARK 500 O ASP B 92 OG SER B 96 2.18 REMARK 500 OD2 ASP A 17 O HOH A 476 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 69.39 -105.97 REMARK 500 PRO A 63 54.96 -66.48 REMARK 500 ALA A 78 -61.81 -101.03 REMARK 500 THR A 79 -73.01 -69.18 REMARK 500 SER A 94 47.93 -95.91 REMARK 500 SER A 95 -24.97 -161.20 REMARK 500 LYS A 120 -9.04 -141.60 REMARK 500 ASN A 128 56.64 -151.25 REMARK 500 ASN A 133 -172.44 -67.90 REMARK 500 CYS A 178 -144.91 -107.45 REMARK 500 LYS A 206 121.22 69.46 REMARK 500 SER A 243 -156.86 -98.94 REMARK 500 GLU A 244 -83.94 -115.93 REMARK 500 ASN A 248 88.43 55.50 REMARK 500 SER A 275 112.75 65.20 REMARK 500 ASP A 276 -59.81 -27.34 REMARK 500 VAL A 303 -74.64 -12.14 REMARK 500 TYR A 327 137.32 -39.65 REMARK 500 ARG A 333 42.11 -105.55 REMARK 500 VAL B 29 -50.62 -127.26 REMARK 500 GLU B 86 37.67 -87.35 REMARK 500 ASP B 92 47.04 -83.31 REMARK 500 SER B 94 -15.04 -155.44 REMARK 500 SER B 96 26.63 -141.59 REMARK 500 ILE B 106 113.93 -5.00 REMARK 500 PRO B 108 -162.81 -75.23 REMARK 500 SER B 109 -82.61 60.87 REMARK 500 ALA B 111 -46.12 -135.23 REMARK 500 THR B 121 -142.48 -80.32 REMARK 500 GLU B 129 92.64 -49.30 REMARK 500 ASP B 130 -46.01 -154.84 REMARK 500 LEU B 132 104.30 59.45 REMARK 500 HIS B 134 -80.75 59.93 REMARK 500 GLU B 147 36.07 -94.88 REMARK 500 CYS B 178 -136.21 -120.43 REMARK 500 SER B 205 56.53 -107.56 REMARK 500 LYS B 206 139.72 69.85 REMARK 500 GLN B 207 72.83 -160.88 REMARK 500 ASN B 248 94.65 54.64 REMARK 500 GLU B 249 -134.26 -97.53 REMARK 500 THR B 273 -70.79 -84.50 REMARK 500 SER B 275 157.18 -45.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 274 SER A 275 -125.44 REMARK 500 GLU B 244 ASN B 245 146.09 REMARK 500 GLU B 247 ASN B 248 -142.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UXN RELATED DB: PDB REMARK 900 RELATED ID: 3UXP RELATED DB: PDB DBREF 3UXO A 1 335 UNP P06766 DPOLB_RAT 1 335 DBREF 3UXO B 1 335 UNP P06766 DPOLB_RAT 1 335 SEQADV 3UXO GLN A 260 UNP P06766 ILE 260 ENGINEERED MUTATION SEQADV 3UXO GLN B 260 UNP P06766 ILE 260 ENGINEERED MUTATION SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU VAL GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL THR SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS LEU VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLU ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS LEU SEQRES 14 A 335 ASP PRO GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO ASN PHE THR SER GLU SER SER LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS ARG VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 ARG PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER GLU ASN ASP GLU SEQRES 20 A 335 ASN GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU GLN SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU GLN ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 ARG TYR ARG GLU PRO LYS ASP ARG SER GLU SEQRES 1 B 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 B 335 GLY ILE THR ASP MET LEU VAL GLU LEU ALA ASN PHE GLU SEQRES 3 B 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 B 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 B 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 B 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 B 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 B 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL THR SEQRES 9 B 335 GLY ILE GLY PRO SER ALA ALA ARG LYS LEU VAL ASP GLU SEQRES 10 B 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 B 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 B 335 GLU ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 B 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS LEU SEQRES 14 B 335 ASP PRO GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 B 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 B 335 THR HIS PRO ASN PHE THR SER GLU SER SER LYS GLN PRO SEQRES 17 B 335 LYS LEU LEU HIS ARG VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 B 335 ARG PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 B 335 PHE MET GLY VAL CYS GLN LEU PRO SER GLU ASN ASP GLU SEQRES 20 B 335 ASN GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU GLN SEQRES 21 B 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 B 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 B 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 B 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 B 335 VAL ASP SER GLU GLN ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 B 335 ARG TYR ARG GLU PRO LYS ASP ARG SER GLU FORMUL 3 HOH *266(H2 O) HELIX 1 1 ASN A 12 VAL A 29 1 18 HELIX 2 2 ALA A 32 TYR A 49 1 18 HELIX 3 3 SER A 55 LEU A 62 1 8 HELIX 4 4 GLY A 66 LEU A 77 1 12 HELIX 5 5 LEU A 82 ASP A 91 1 10 HELIX 6 6 ASP A 92 THR A 101 1 10 HELIX 7 7 GLY A 107 ASP A 116 1 10 HELIX 8 8 THR A 121 ARG A 126 1 6 HELIX 9 9 ASN A 128 LEU A 132 5 5 HELIX 10 10 ASN A 133 TYR A 142 1 10 HELIX 11 11 TYR A 142 LYS A 148 1 7 HELIX 12 12 ARG A 152 ASP A 170 1 19 HELIX 13 13 CYS A 178 ARG A 183 1 6 HELIX 14 14 GLN A 207 VAL A 221 1 15 HELIX 15 15 PRO A 261 ASP A 263 5 3 HELIX 16 16 GLN A 264 GLY A 274 1 11 HELIX 17 17 SER A 275 LYS A 289 1 15 HELIX 18 18 SER A 315 ILE A 323 1 9 HELIX 19 19 GLU A 329 ARG A 333 5 5 HELIX 20 20 ASN B 12 VAL B 29 1 18 HELIX 21 21 ALA B 32 LYS B 48 1 17 HELIX 22 22 SER B 55 LYS B 61 1 7 HELIX 23 23 GLY B 66 GLY B 80 1 15 HELIX 24 24 GLU B 86 ASP B 91 1 6 HELIX 25 25 ALA B 111 ASP B 116 1 6 HELIX 26 26 GLN B 136 TYR B 142 1 7 HELIX 27 27 TYR B 142 GLU B 147 1 6 HELIX 28 28 ARG B 152 ASP B 170 1 19 HELIX 29 29 CYS B 178 ARG B 183 1 6 HELIX 30 30 PRO B 208 VAL B 221 1 14 HELIX 31 31 PRO B 261 ASP B 263 5 3 HELIX 32 32 GLN B 264 GLY B 274 1 11 HELIX 33 33 SER B 275 LYS B 289 1 15 HELIX 34 34 SER B 315 ILE B 323 1 9 HELIX 35 35 GLU B 329 ARG B 333 5 5 SHEET 1 A 2 ILE A 150 PRO A 151 0 SHEET 2 A 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 B 5 ILE A 174 VAL A 177 0 SHEET 2 B 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 B 5 ARG A 253 LEU A 259 1 O ASP A 256 N VAL A 193 SHEET 4 B 5 LYS A 234 CYS A 239 -1 N PHE A 235 O ILE A 257 SHEET 5 B 5 ILE A 224 LYS A 230 -1 N SER A 229 O MET A 236 SHEET 1 C 2 PHE A 291 ILE A 293 0 SHEET 2 C 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 SHEET 1 D 2 ILE B 150 PRO B 151 0 SHEET 2 D 2 SER B 187 SER B 188 -1 O SER B 188 N ILE B 150 SHEET 1 E 5 ILE B 174 VAL B 177 0 SHEET 2 E 5 MET B 191 THR B 196 -1 O LEU B 194 N THR B 176 SHEET 3 E 5 ARG B 253 LEU B 259 1 O ARG B 258 N LEU B 195 SHEET 4 E 5 LYS B 234 CYS B 239 -1 N PHE B 235 O ILE B 257 SHEET 5 E 5 ILE B 224 LYS B 230 -1 N SER B 229 O MET B 236 SHEET 1 F 2 PHE B 291 ILE B 293 0 SHEET 2 F 2 ILE B 298 PRO B 300 -1 O ARG B 299 N THR B 292 CRYST1 77.908 67.400 82.456 90.00 115.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012836 0.000000 0.006208 0.00000 SCALE2 0.000000 0.014837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013472 0.00000