PDB Short entry for 3UY8 HEADER LYASE 06-DEC-11 3UY8 TITLE DESIGNED PROTEIN KE59 R5_11/5F COMPND MOL_ID: 1; COMPND 2 MOLECULE: KEMP ELIMINASE KE59 R5_11/5F; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, ISRAEL STRUCTURAL PROTEOMICS CENTER, ISPC, BETA KEYWDS 2 BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.KHERSONSKY,G.KISS,D.ROETHLISBERGER,O.DYM,S.ALBECK,K.N.HOUK,D.BAKER, AUTHOR 2 D.S.TAWFIK,ISRAEL STRUCTURAL PROTEOMICS CENTER (ISPC) REVDAT 4 13-SEP-23 3UY8 1 REMARK REVDAT 3 11-JUL-12 3UY8 1 JRNL REVDAT 2 27-JUN-12 3UY8 1 JRNL REVDAT 1 06-JUN-12 3UY8 0 JRNL AUTH O.KHERSONSKY,G.KISS,D.ROTHLISBERGER,O.DYM,S.ALBECK,K.N.HOUK, JRNL AUTH 2 D.BAKER,D.S.TAWFIK JRNL TITL BRIDGING THE GAPS IN DESIGN METHODOLOGIES BY EVOLUTIONARY JRNL TITL 2 OPTIMIZATION OF THE STABILITY AND PROFICIENCY OF DESIGNED JRNL TITL 3 KEMP ELIMINASE KE59. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 10358 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22685214 JRNL DOI 10.1073/PNAS.1121063109 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 22286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1433 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : 1.86000 REMARK 3 B33 (A**2) : -1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.421 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.312 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4049 ; 0.037 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5457 ; 2.782 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 491 ; 8.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;40.545 ;23.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;21.225 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;22.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.206 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2968 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2459 ; 1.588 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3992 ; 2.830 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 4.547 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1465 ; 7.080 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3UY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : PT COATED MIRRORS IN KIRKPATRICK REMARK 200 -BAEZ (KB) GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.05700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3UYC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M BIS-TRIS, REMARK 280 PH 5.5, 25% PEG3350, 0.01 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.98050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.36350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.98050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.36350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 39 CD OE1 OE2 REMARK 470 ARG A 43 CZ NH1 NH2 REMARK 470 ARG A 97 NE CZ NH1 NH2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 ASP A 120 OD1 OD2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 LEU B 15 CG CD1 CD2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 GLN B 248 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER A 21 OD1 ASP A 121 2.18 REMARK 500 OG SER B 21 OD1 ASP B 121 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 8 CB TRP A 8 CG -0.109 REMARK 500 LYS A 115 CD LYS A 115 CE 0.157 REMARK 500 GLU A 116 C GLU A 116 O 0.146 REMARK 500 VAL A 206 CB VAL A 206 CG2 0.134 REMARK 500 GLU A 221 CG GLU A 221 CD 0.147 REMARK 500 TYR A 223 CD1 TYR A 223 CE1 0.140 REMARK 500 ARG B 54 CD ARG B 54 NE -0.103 REMARK 500 GLU B 86 CG GLU B 86 CD 0.112 REMARK 500 PHE B 89 CZ PHE B 89 CE2 0.129 REMARK 500 GLU B 139 CG GLU B 139 CD 0.095 REMARK 500 GLU B 143 CG GLU B 143 CD 0.094 REMARK 500 GLU B 143 CD GLU B 143 OE2 0.069 REMARK 500 GLU B 147 CG GLU B 147 CD 0.095 REMARK 500 SER B 211 C SER B 211 O 0.130 REMARK 500 GLU B 218 CG GLU B 218 CD 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 80 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG B 28 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 171 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 171 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 LEU B 187 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 GLU B 188 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 27 -106.07 137.97 REMARK 500 ARG A 64 133.58 -170.96 REMARK 500 GLU A 74 -24.96 -38.85 REMARK 500 GLU A 188 81.07 73.67 REMARK 500 SER A 211 22.06 -161.60 REMARK 500 SER A 214 -25.49 -147.41 REMARK 500 ALA B 24 108.71 118.75 REMARK 500 ASN B 44 67.99 19.60 REMARK 500 ASN B 45 73.10 57.85 REMARK 500 SER B 104 54.65 -113.18 REMARK 500 THR B 186 -82.51 -104.14 REMARK 500 LEU B 187 95.58 74.50 REMARK 500 GLU B 188 98.97 59.64 REMARK 500 ASN B 204 -55.62 32.57 REMARK 500 SER B 214 -7.89 -147.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 203 ASN B 204 122.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 249 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UXA RELATED DB: PDB REMARK 900 DESIGNED PROTEIN KE59 R1 7/10H REMARK 900 RELATED ID: 3UXD RELATED DB: PDB REMARK 900 DESIGNED PROTEIN KE59 R1 7/10H WITH DICHLOROBENZOTRIAZOLE (DBT) REMARK 900 RELATED ID: 3UY7 RELATED DB: PDB REMARK 900 DESIGNED PROTEIN KE59 R1 7/10H WITH G130S MUTATION REMARK 900 RELATED ID: 3UYC RELATED DB: PDB REMARK 900 DESIGNED PROTEIN KE59 R8_2/7A REMARK 900 RELATED ID: 3UZ5 RELATED DB: PDB REMARK 900 DESIGNED PROTEIN KE59 R13 3/11H REMARK 900 RELATED ID: 3UZJ RELATED DB: PDB REMARK 900 DESIGNED PROTEIN KE59 R13 3/11H WITH BENZOTRIAZOLE DBREF 3UY8 A 2 248 PDB 3UY8 3UY8 2 248 DBREF 3UY8 B 2 248 PDB 3UY8 3UY8 2 248 SEQRES 1 A 247 PRO ARG TYR LEU LYS GLY TRP LEU GLU ASP VAL VAL GLN SEQRES 2 A 247 LEU SER LEU ARG ARG PRO SER LEU ARG ALA SER ARG GLN SEQRES 3 A 247 ARG PRO ILE ILE SER LEU LYS GLU ARG ILE LEU GLU PHE SEQRES 4 A 247 ASN LYS ARG ASN ASN THR ALA ILE ILE ALA VAL TYR LYS SEQRES 5 A 247 ARG LYS SER PRO SER GLY LEU ASP VAL GLU ARG ASP PRO SEQRES 6 A 247 ILE GLU TYR ALA LYS PHE MET GLU ARG TYR ALA VAL GLY SEQRES 7 A 247 LEU ALA ILE LEU THR GLU GLU LYS TYR PHE ASN GLY SER SEQRES 8 A 247 TYR GLU ASP LEU ARG LYS ILE ALA SER SER VAL SER ILE SEQRES 9 A 247 PRO ILE LEU MET TRP ASP PHE ILE VAL LYS GLU SER GLN SEQRES 10 A 247 ILE ASP ASP ALA TYR ASN LEU GLY ALA ASP THR VAL GLY SEQRES 11 A 247 LEU ILE VAL LYS ILE LEU THR GLU ARG GLU LEU GLU SER SEQRES 12 A 247 LEU LEU GLU TYR ALA ARG SER TYR GLY MET GLU PRO ALA SEQRES 13 A 247 ILE VAL ILE ASN ASP GLU ASN ASP LEU ASP ILE ALA LEU SEQRES 14 A 247 ARG ILE GLY ALA ARG PHE ILE ILE ILE SER SER HIS ASP SEQRES 15 A 247 LEU GLU THR LEU GLU ILE ASN LYS GLU ASN GLN ARG LYS SEQRES 16 A 247 LEU ILE SER MET ILE PRO SER ASN VAL VAL LYS VAL VAL SEQRES 17 A 247 ALA SER GLY ILE SER GLU ARG ASN GLU ILE GLU GLU LEU SEQRES 18 A 247 TYR LYS LEU GLY VAL ASN ALA PHE GLU ILE GLY SER SER SEQRES 19 A 247 LEU MET ARG ASN PRO GLU LYS ILE LYS GLU PHE ILE GLN SEQRES 1 B 247 PRO ARG TYR LEU LYS GLY TRP LEU GLU ASP VAL VAL GLN SEQRES 2 B 247 LEU SER LEU ARG ARG PRO SER LEU ARG ALA SER ARG GLN SEQRES 3 B 247 ARG PRO ILE ILE SER LEU LYS GLU ARG ILE LEU GLU PHE SEQRES 4 B 247 ASN LYS ARG ASN ASN THR ALA ILE ILE ALA VAL TYR LYS SEQRES 5 B 247 ARG LYS SER PRO SER GLY LEU ASP VAL GLU ARG ASP PRO SEQRES 6 B 247 ILE GLU TYR ALA LYS PHE MET GLU ARG TYR ALA VAL GLY SEQRES 7 B 247 LEU ALA ILE LEU THR GLU GLU LYS TYR PHE ASN GLY SER SEQRES 8 B 247 TYR GLU ASP LEU ARG LYS ILE ALA SER SER VAL SER ILE SEQRES 9 B 247 PRO ILE LEU MET TRP ASP PHE ILE VAL LYS GLU SER GLN SEQRES 10 B 247 ILE ASP ASP ALA TYR ASN LEU GLY ALA ASP THR VAL GLY SEQRES 11 B 247 LEU ILE VAL LYS ILE LEU THR GLU ARG GLU LEU GLU SER SEQRES 12 B 247 LEU LEU GLU TYR ALA ARG SER TYR GLY MET GLU PRO ALA SEQRES 13 B 247 ILE VAL ILE ASN ASP GLU ASN ASP LEU ASP ILE ALA LEU SEQRES 14 B 247 ARG ILE GLY ALA ARG PHE ILE ILE ILE SER SER HIS ASP SEQRES 15 B 247 LEU GLU THR LEU GLU ILE ASN LYS GLU ASN GLN ARG LYS SEQRES 16 B 247 LEU ILE SER MET ILE PRO SER ASN VAL VAL LYS VAL VAL SEQRES 17 B 247 ALA SER GLY ILE SER GLU ARG ASN GLU ILE GLU GLU LEU SEQRES 18 B 247 TYR LYS LEU GLY VAL ASN ALA PHE GLU ILE GLY SER SER SEQRES 19 B 247 LEU MET ARG ASN PRO GLU LYS ILE LYS GLU PHE ILE GLN HET SO4 A 249 5 HET SO4 B 1 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *5(H2 O) HELIX 1 1 LYS A 6 ARG A 18 1 13 HELIX 2 2 SER A 32 ARG A 43 1 12 HELIX 3 3 ASP A 65 GLU A 74 1 10 HELIX 4 4 SER A 92 VAL A 103 1 12 HELIX 5 5 LYS A 115 LEU A 125 1 11 HELIX 6 6 THR A 138 TYR A 152 1 15 HELIX 7 7 ASP A 162 GLY A 173 1 12 HELIX 8 8 ASN A 193 MET A 200 1 8 HELIX 9 9 GLU A 215 LYS A 224 1 10 HELIX 10 10 GLY A 233 ASN A 239 1 7 HELIX 11 11 LYS A 242 ILE A 247 1 6 HELIX 12 12 LYS B 6 ARG B 18 1 13 HELIX 13 13 SER B 32 ASN B 44 1 13 HELIX 14 14 ASP B 65 GLU B 74 1 10 HELIX 15 15 SER B 92 SER B 101 1 10 HELIX 16 16 LYS B 115 GLY B 126 1 12 HELIX 17 17 LYS B 135 LEU B 137 5 3 HELIX 18 18 THR B 138 SER B 151 1 14 HELIX 19 19 ASP B 162 ILE B 172 1 11 HELIX 20 20 ASN B 193 SER B 199 1 7 HELIX 21 21 GLU B 215 LEU B 225 1 11 HELIX 22 22 GLY B 233 ASN B 239 1 7 HELIX 23 23 LYS B 242 GLN B 248 1 7 SHEET 1 A 9 ILE A 48 TYR A 52 0 SHEET 2 A 9 GLY A 79 LEU A 83 1 O ALA A 81 N TYR A 52 SHEET 3 A 9 ILE A 107 TRP A 110 1 O LEU A 108 N LEU A 80 SHEET 4 A 9 THR A 129 ILE A 133 1 O THR A 129 N MET A 109 SHEET 5 A 9 ALA A 157 ILE A 160 1 O VAL A 159 N LEU A 132 SHEET 6 A 9 PHE A 176 SER A 180 1 O PHE A 176 N ILE A 158 SHEET 7 A 9 VAL A 206 ALA A 210 1 O VAL A 208 N ILE A 179 SHEET 8 A 9 ALA A 229 ILE A 232 1 O GLU A 231 N VAL A 209 SHEET 9 A 9 ILE A 48 TYR A 52 1 N ILE A 49 O PHE A 230 SHEET 1 B 9 ILE B 48 TYR B 52 0 SHEET 2 B 9 GLY B 79 LEU B 83 1 O ALA B 81 N TYR B 52 SHEET 3 B 9 ILE B 107 TRP B 110 1 O TRP B 110 N ILE B 82 SHEET 4 B 9 THR B 129 ILE B 133 1 O THR B 129 N MET B 109 SHEET 5 B 9 ALA B 157 ILE B 160 1 O VAL B 159 N LEU B 132 SHEET 6 B 9 PHE B 176 SER B 180 1 O ILE B 178 N ILE B 158 SHEET 7 B 9 VAL B 206 ALA B 210 1 O VAL B 208 N ILE B 179 SHEET 8 B 9 ALA B 229 ILE B 232 1 O GLU B 231 N VAL B 209 SHEET 9 B 9 ILE B 48 TYR B 52 1 N ILE B 49 O ILE B 232 CISPEP 1 ARG A 26 GLN A 27 0 -21.38 CISPEP 2 LEU A 187 GLU A 188 0 5.64 CISPEP 3 ARG B 23 ALA B 24 0 -23.73 CISPEP 4 ASN B 44 ASN B 45 0 28.82 CISPEP 5 LEU B 187 GLU B 188 0 -23.46 SITE 1 AC1 6 LYS B 53 HIS B 182 SER B 211 GLY B 212 SITE 2 AC1 6 GLY B 233 SER B 234 SITE 1 AC2 5 LYS A 53 GLY A 212 ILE A 232 GLY A 233 SITE 2 AC2 5 SER A 234 CRYST1 87.961 102.727 66.296 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015084 0.00000