PDB Short entry for 3V42 HEADER PROTEIN BINDING 14-DEC-11 3V42 TITLE CRYSTAL STRUCTURE OF RENAL TUMOR SUPPRESSOR PROTEIN, FOLLICULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOLLICULIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 341-566; COMPND 5 SYNONYM: BHD SKIN LESION FIBROFOLLICULOMA PROTEIN, BIRT-HOGG-DUBE COMPND 6 SYNDROME PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BHD, FLCN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: GATEWAY DESTINATION VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG10A KEYWDS FOLLICULIN, TUMOR SUPPRESSOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.K.NOOKALA,D.Y.CHIRGADZE,T.L.BLUNDELL REVDAT 4 03-APR-24 3V42 1 REMARK REVDAT 3 28-FEB-24 3V42 1 SEQADV REVDAT 2 26-SEP-12 3V42 1 JRNL REVDAT 1 15-AUG-12 3V42 0 JRNL AUTH R.K.NOOKALA,L.LANGEMEYER,A.PACITTO,B.OCHOA-MONTANO, JRNL AUTH 2 J.C.DONALDSON,B.K.BLASZCZYK,D.Y.CHIRGADZE,F.A.BARR, JRNL AUTH 3 J.F.BAZAN,T.L.BLUNDELL JRNL TITL CRYSTAL STRUCTURE OF FOLLICULIN REVEALS A HIDDENN FUNCTION JRNL TITL 2 IN GENETICALLY INHERITED RENAL CANCER. JRNL REF OPEN BIOL V. 2 20071 2012 JRNL REFN JRNL PMID 22977732 JRNL DOI 10.1098/RSOB.120071 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1570 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3150 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4278 ; 1.925 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 6.615 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;34.033 ;23.710 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 538 ;17.374 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2299 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1975 ; 1.254 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3195 ; 2.145 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1175 ; 3.467 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1082 ; 5.401 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 343 A 471 REMARK 3 ORIGIN FOR THE GROUP (A): 59.9124 22.2584 39.2068 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.0449 REMARK 3 T33: 0.0379 T12: -0.0039 REMARK 3 T13: -0.0012 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.4571 L22: 0.4515 REMARK 3 L33: 1.3558 L12: 0.2261 REMARK 3 L13: 0.2272 L23: -0.5309 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.0052 S13: -0.0065 REMARK 3 S21: 0.1038 S22: 0.0020 S23: 0.0029 REMARK 3 S31: -0.2150 S32: 0.0156 S33: -0.0083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 558 REMARK 3 ORIGIN FOR THE GROUP (A): 59.4312 0.3376 40.7193 REMARK 3 T TENSOR REMARK 3 T11: 0.0227 T22: 0.0347 REMARK 3 T33: 0.0620 T12: 0.0023 REMARK 3 T13: -0.0035 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.6735 L22: 2.9140 REMARK 3 L33: 0.0116 L12: 0.2844 REMARK 3 L13: 0.0472 L23: 0.1558 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: -0.0076 S13: -0.0319 REMARK 3 S21: 0.1025 S22: -0.0155 S23: 0.1164 REMARK 3 S31: 0.0074 S32: -0.0006 S33: -0.0167 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 343 B 497 REMARK 3 ORIGIN FOR THE GROUP (A): 61.1144 18.5479 12.3337 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.0521 REMARK 3 T33: 0.0536 T12: -0.0260 REMARK 3 T13: 0.0128 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.1026 L22: 0.9683 REMARK 3 L33: 1.2018 L12: 0.0515 REMARK 3 L13: -0.2774 L23: -0.6683 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: 0.0056 S13: -0.0027 REMARK 3 S21: -0.0903 S22: 0.0877 S23: -0.0472 REMARK 3 S31: 0.1180 S32: -0.0193 S33: -0.0450 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 498 B 558 REMARK 3 ORIGIN FOR THE GROUP (A): 56.4011 40.1152 15.0934 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.0552 REMARK 3 T33: 0.0609 T12: -0.0068 REMARK 3 T13: 0.0166 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.2742 L22: 2.3220 REMARK 3 L33: 0.4612 L12: 0.7109 REMARK 3 L13: 0.1848 L23: 0.0786 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: -0.0107 S13: 0.0567 REMARK 3 S21: 0.0861 S22: 0.0597 S23: 0.2529 REMARK 3 S31: -0.0885 S32: -0.0895 S33: -0.0499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3V42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35477 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 29.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : 0.64800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: SEMET STRUCTURE OF FOLLICULIN COLLECTED AT 2.9A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, PH5.5, 200 MM LISO4, REMARK 280 25% PEG 3350, VAPOR DIFFUSION, TEMPERATURE 293K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.79200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.79200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.02500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.97550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.02500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.97550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.79200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.02500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.97550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.79200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.02500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.97550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 129.07500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -49.97550 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.79200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 341 REMARK 465 LYS A 342 REMARK 465 ARG A 446 REMARK 465 SER A 447 REMARK 465 THR A 448 REMARK 465 LEU A 449 REMARK 465 HIS A 450 REMARK 465 PRO A 451 REMARK 465 VAL A 452 REMARK 465 GLY A 453 REMARK 465 ALA A 454 REMARK 465 GLU A 455 REMARK 465 ASP A 456 REMARK 465 ASP A 457 REMARK 465 GLN A 458 REMARK 465 VAL A 473 REMARK 465 ALA A 474 REMARK 465 ALA A 475 REMARK 465 ASP A 476 REMARK 465 ASP A 525 REMARK 465 SER A 526 REMARK 465 ARG A 527 REMARK 465 LYS A 559 REMARK 465 THR A 560 REMARK 465 TYR A 561 REMARK 465 LYS A 562 REMARK 465 SER A 563 REMARK 465 HIS A 564 REMARK 465 LEU A 565 REMARK 465 MET A 566 REMARK 465 ARG B 341 REMARK 465 LYS B 342 REMARK 465 ALA B 444 REMARK 465 ALA B 445 REMARK 465 ARG B 446 REMARK 465 SER B 447 REMARK 465 THR B 448 REMARK 465 LEU B 449 REMARK 465 HIS B 450 REMARK 465 PRO B 451 REMARK 465 VAL B 452 REMARK 465 GLY B 453 REMARK 465 ALA B 454 REMARK 465 GLU B 455 REMARK 465 ASP B 456 REMARK 465 ASP B 457 REMARK 465 VAL B 524 REMARK 465 ASP B 525 REMARK 465 SER B 526 REMARK 465 LYS B 559 REMARK 465 THR B 560 REMARK 465 TYR B 561 REMARK 465 LYS B 562 REMARK 465 SER B 563 REMARK 465 HIS B 564 REMARK 465 LEU B 565 REMARK 465 MET B 566 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 343 CG CD1 CD2 REMARK 470 LYS A 529 CG CD CE NZ REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 LEU B 343 CG CD1 CD2 REMARK 470 SER B 421 OG REMARK 470 GLN B 425 CG CD OE1 NE2 REMARK 470 GLN B 458 CG CD OE1 NE2 REMARK 470 SER B 461 OG REMARK 470 LYS B 462 CG CD CE NZ REMARK 470 GLN B 493 CG CD OE1 NE2 REMARK 470 LYS B 523 CG CD CE NZ REMARK 470 LYS B 529 CG CD CE NZ REMARK 470 GLU B 530 CG CD OE1 OE2 REMARK 470 GLN B 533 CG CD OE1 NE2 REMARK 470 LYS B 534 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 377 O PRO A 422 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 179 O HOH B 218 6655 1.47 REMARK 500 O HOH A 199 O HOH B 254 7645 1.78 REMARK 500 O TYR A 463 O HOH B 217 6655 1.80 REMARK 500 O HOH A 132 O HOH B 217 6655 1.86 REMARK 500 O HOH A 161 O HOH B 219 6655 1.92 REMARK 500 O HOH A 181 O HOH B 99 6655 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 410 CD GLU A 410 OE2 -0.067 REMARK 500 TYR A 413 CE2 TYR A 413 CD2 -0.103 REMARK 500 CYS B 399 CB CYS B 399 SG -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 527 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 405 81.21 -156.67 REMARK 500 TYR B 405 82.06 -150.35 REMARK 500 ALA B 474 -13.91 79.22 REMARK 500 THR B 522 37.27 -98.85 REMARK 500 LEU B 557 -7.63 -141.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 3V42 A 341 566 UNP Q8NFG4 FLCN_HUMAN 341 566 DBREF 3V42 B 341 566 UNP Q8NFG4 FLCN_HUMAN 341 566 SEQADV 3V42 ALA A 454 UNP Q8NFG4 CYS 454 ENGINEERED MUTATION SEQADV 3V42 ALA A 503 UNP Q8NFG4 CYS 503 ENGINEERED MUTATION SEQADV 3V42 ALA A 506 UNP Q8NFG4 CYS 506 ENGINEERED MUTATION SEQADV 3V42 ALA B 454 UNP Q8NFG4 CYS 454 ENGINEERED MUTATION SEQADV 3V42 ALA B 503 UNP Q8NFG4 CYS 503 ENGINEERED MUTATION SEQADV 3V42 ALA B 506 UNP Q8NFG4 CYS 506 ENGINEERED MUTATION SEQRES 1 A 226 ARG LYS LEU PRO VAL PHE LYS SER LEU ARG HIS MET ARG SEQRES 2 A 226 GLN VAL LEU GLY ALA PRO SER PHE ARG MET LEU ALA TRP SEQRES 3 A 226 HIS VAL LEU MET GLY ASN GLN VAL ILE TRP LYS SER ARG SEQRES 4 A 226 ASP VAL ASP LEU VAL GLN SER ALA PHE GLU VAL LEU ARG SEQRES 5 A 226 THR MET LEU PRO VAL GLY CYS VAL ARG ILE ILE PRO TYR SEQRES 6 A 226 SER SER GLN TYR GLU GLU ALA TYR ARG CYS ASN PHE LEU SEQRES 7 A 226 GLY LEU SER PRO HIS VAL GLN ILE PRO PRO HIS VAL LEU SEQRES 8 A 226 SER SER GLU PHE ALA VAL ILE VAL GLU VAL HIS ALA ALA SEQRES 9 A 226 ALA ARG SER THR LEU HIS PRO VAL GLY ALA GLU ASP ASP SEQRES 10 A 226 GLN SER LEU SER LYS TYR GLU PHE VAL VAL THR SER GLY SEQRES 11 A 226 SER PRO VAL ALA ALA ASP ARG VAL GLY PRO THR ILE LEU SEQRES 12 A 226 ASN LYS ILE GLU ALA ALA LEU THR ASN GLN ASN LEU SER SEQRES 13 A 226 VAL ASP VAL VAL ASP GLN ALA LEU VAL ALA LEU LYS GLU SEQRES 14 A 226 GLU TRP MET ASN LYS VAL LYS VAL LEU PHE LYS PHE THR SEQRES 15 A 226 LYS VAL ASP SER ARG PRO LYS GLU ASP THR GLN LYS LEU SEQRES 16 A 226 LEU SER ILE LEU GLY ALA SER GLU GLU ASP ASN VAL LYS SEQRES 17 A 226 LEU LEU LYS PHE TRP MET THR GLY LEU SER LYS THR TYR SEQRES 18 A 226 LYS SER HIS LEU MET SEQRES 1 B 226 ARG LYS LEU PRO VAL PHE LYS SER LEU ARG HIS MET ARG SEQRES 2 B 226 GLN VAL LEU GLY ALA PRO SER PHE ARG MET LEU ALA TRP SEQRES 3 B 226 HIS VAL LEU MET GLY ASN GLN VAL ILE TRP LYS SER ARG SEQRES 4 B 226 ASP VAL ASP LEU VAL GLN SER ALA PHE GLU VAL LEU ARG SEQRES 5 B 226 THR MET LEU PRO VAL GLY CYS VAL ARG ILE ILE PRO TYR SEQRES 6 B 226 SER SER GLN TYR GLU GLU ALA TYR ARG CYS ASN PHE LEU SEQRES 7 B 226 GLY LEU SER PRO HIS VAL GLN ILE PRO PRO HIS VAL LEU SEQRES 8 B 226 SER SER GLU PHE ALA VAL ILE VAL GLU VAL HIS ALA ALA SEQRES 9 B 226 ALA ARG SER THR LEU HIS PRO VAL GLY ALA GLU ASP ASP SEQRES 10 B 226 GLN SER LEU SER LYS TYR GLU PHE VAL VAL THR SER GLY SEQRES 11 B 226 SER PRO VAL ALA ALA ASP ARG VAL GLY PRO THR ILE LEU SEQRES 12 B 226 ASN LYS ILE GLU ALA ALA LEU THR ASN GLN ASN LEU SER SEQRES 13 B 226 VAL ASP VAL VAL ASP GLN ALA LEU VAL ALA LEU LYS GLU SEQRES 14 B 226 GLU TRP MET ASN LYS VAL LYS VAL LEU PHE LYS PHE THR SEQRES 15 B 226 LYS VAL ASP SER ARG PRO LYS GLU ASP THR GLN LYS LEU SEQRES 16 B 226 LEU SER ILE LEU GLY ALA SER GLU GLU ASP ASN VAL LYS SEQRES 17 B 226 LEU LEU LYS PHE TRP MET THR GLY LEU SER LYS THR TYR SEQRES 18 B 226 LYS SER HIS LEU MET FORMUL 3 HOH *224(H2 O) HELIX 1 1 SER A 348 GLY A 357 1 10 HELIX 2 2 GLY A 357 GLY A 371 1 15 HELIX 3 3 ASP A 380 ARG A 392 1 13 HELIX 4 4 THR A 393 LEU A 395 5 3 HELIX 5 5 PRO A 396 VAL A 400 5 5 HELIX 6 6 PRO A 427 SER A 432 1 6 HELIX 7 7 PRO A 480 ASN A 492 1 13 HELIX 8 8 SER A 496 THR A 522 1 27 HELIX 9 9 LYS A 529 LEU A 539 1 11 HELIX 10 10 GLU A 543 MET A 554 1 12 HELIX 11 11 THR A 555 LEU A 557 5 3 HELIX 12 12 SER B 348 GLY B 357 1 10 HELIX 13 13 GLY B 357 MET B 370 1 14 HELIX 14 14 ASP B 380 ARG B 392 1 13 HELIX 15 15 THR B 393 LEU B 395 5 3 HELIX 16 16 PRO B 396 VAL B 400 5 5 HELIX 17 17 PRO B 427 SER B 432 1 6 HELIX 18 18 PRO B 480 ASN B 492 1 13 HELIX 19 19 SER B 496 THR B 522 1 27 HELIX 20 20 PRO B 528 LEU B 539 1 12 HELIX 21 21 GLU B 543 MET B 554 1 12 HELIX 22 22 THR B 555 LEU B 557 5 3 SHEET 1 A 5 ILE A 402 SER A 406 0 SHEET 2 A 5 PHE A 417 LEU A 420 1 O GLY A 419 N ILE A 403 SHEET 3 A 5 GLN A 373 LYS A 377 1 N VAL A 374 O LEU A 418 SHEET 4 A 5 ALA A 436 ALA A 443 1 O VAL A 439 N ILE A 375 SHEET 5 A 5 TYR A 463 SER A 469 -1 O GLU A 464 N HIS A 442 SHEET 1 B 5 ILE B 402 SER B 406 0 SHEET 2 B 5 PHE B 417 LEU B 420 1 O GLY B 419 N SER B 406 SHEET 3 B 5 GLN B 373 LYS B 377 1 N TRP B 376 O LEU B 420 SHEET 4 B 5 ALA B 436 HIS B 442 1 O VAL B 439 N ILE B 375 SHEET 5 B 5 GLU B 464 SER B 469 -1 O THR B 468 N ILE B 438 CISPEP 1 GLY A 479 PRO A 480 0 -0.82 CISPEP 2 GLY B 479 PRO B 480 0 -7.70 CRYST1 86.050 99.951 107.584 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010005 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009295 0.00000