PDB Short entry for 3V4R HEADER HYDROLASE/DNA 15-DEC-11 3V4R TITLE CRYSTAL STRUCTURE OF A UVRB DIMER-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN UVRB, EXCINUCLEASE ABC SUBUNIT B, PROTEIN DINA; COMPND 5 EC: 3.1.21.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA: 5 -TACTGTTT-3; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BSU35170, DINA, UVR, UVRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 8C; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHESISED DNA KEYWDS HELICASE MOTIFS AND A BETA-HAIRPIN, DNA HELICASE, UVRA, ATP KEYWDS 2 HYDROLYSIS, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.P.J.WEBSTER,R.JUKES,T.BARRETT REVDAT 3 13-SEP-23 3V4R 1 REMARK SEQADV REVDAT 2 10-OCT-12 3V4R 1 JRNL REVDAT 1 04-JUL-12 3V4R 0 JRNL AUTH M.P.WEBSTER,R.JUKES,V.S.ZAMFIR,C.W.KAY,C.BAGNERIS,T.BARRETT JRNL TITL CRYSTAL STRUCTURE OF THE UVRB DIMER: INSIGHTS INTO THE JRNL TITL 2 NATURE AND FUNCTIONING OF THE UVRAB DAMAGE ENGAGEMENT AND JRNL TITL 3 UVRB-DNA COMPLEXES. JRNL REF NUCLEIC ACIDS RES. V. 40 8743 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22753105 JRNL DOI 10.1093/NAR/GKS633 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2830 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2271 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2677 REMARK 3 BIN R VALUE (WORKING SET) : 0.2237 REMARK 3 BIN FREE R VALUE : 0.2877 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8526 REMARK 3 NUCLEIC ACID ATOMS : 254 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.23220 REMARK 3 B22 (A**2) : 12.12590 REMARK 3 B33 (A**2) : -1.89370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.522 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8998 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12331 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3000 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 183 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1358 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8998 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1292 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9787 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.97 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.6313 -0.5597 -49.2851 REMARK 3 T TENSOR REMARK 3 T11: -0.1133 T22: -0.1178 REMARK 3 T33: -0.1366 T12: 0.0529 REMARK 3 T13: -0.0344 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 1.2586 L22: 1.0715 REMARK 3 L33: 1.0667 L12: 0.1980 REMARK 3 L13: -0.3509 L23: -0.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.0412 S13: -0.0582 REMARK 3 S21: 0.1742 S22: -0.0057 S23: -0.0189 REMARK 3 S31: -0.0704 S32: 0.1142 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -20.8823 3.6926 -70.9020 REMARK 3 T TENSOR REMARK 3 T11: -0.1885 T22: -0.0387 REMARK 3 T33: -0.1301 T12: -0.0764 REMARK 3 T13: -0.0709 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.0841 L22: 1.8001 REMARK 3 L33: 0.7430 L12: -0.6608 REMARK 3 L13: -0.0053 L23: 0.2962 REMARK 3 S TENSOR REMARK 3 S11: -0.0829 S12: -0.0311 S13: -0.2118 REMARK 3 S21: 0.0870 S22: 0.0491 S23: 0.2427 REMARK 3 S31: 0.1406 S32: -0.0730 S33: 0.0338 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -15.3130 9.5494 -73.3775 REMARK 3 T TENSOR REMARK 3 T11: -0.0791 T22: 0.0628 REMARK 3 T33: 0.0993 T12: 0.0645 REMARK 3 T13: -0.1075 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 2.6261 L22: 1.1737 REMARK 3 L33: 0.5323 L12: 0.7655 REMARK 3 L13: 1.9960 L23: -1.0501 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.0844 S13: 0.0394 REMARK 3 S21: -0.0487 S22: 0.0052 S23: -0.0159 REMARK 3 S31: 0.0122 S32: 0.0388 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 4.0902 -8.3040 -52.5323 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.0038 REMARK 3 T33: -0.0803 T12: -0.1008 REMARK 3 T13: -0.0960 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0110 L22: 2.2684 REMARK 3 L33: 1.2926 L12: 0.5017 REMARK 3 L13: 1.5445 L23: 1.4665 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.0651 S13: -0.0845 REMARK 3 S21: 0.0508 S22: 0.0282 S23: -0.0245 REMARK 3 S31: 0.0272 S32: 0.0718 S33: -0.0310 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 19.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PROTEIN CO-ORDINATES FROM 2D7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN FROM 0.1M MES PH REMARK 280 6.5, 12% PEG 20,0000, MICROBATCH, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.97000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT IS COMPRISED OF A UVRB DIMER, TWO DNA REMARK 300 7MERS AND 2 MOLECULES OF ADP REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 205 REMARK 465 SER A 206 REMARK 465 GLU A 591 REMARK 465 ILE A 592 REMARK 465 ARG A 593 REMARK 465 ASP A 594 REMARK 465 VAL A 595 REMARK 465 ILE A 596 REMARK 465 ARG A 597 REMARK 465 ALA A 598 REMARK 465 THR A 599 REMARK 465 VAL A 600 REMARK 465 ALA A 601 REMARK 465 ALA A 602 REMARK 465 GLU A 603 REMARK 465 ASP A 604 REMARK 465 LYS A 605 REMARK 465 ALA A 606 REMARK 465 GLU A 607 REMARK 465 TYR A 608 REMARK 465 LYS A 609 REMARK 465 THR A 610 REMARK 465 LYS A 611 REMARK 465 ALA A 612 REMARK 465 ALA A 613 REMARK 465 PRO A 614 REMARK 465 LYS A 615 REMARK 465 LEU A 616 REMARK 465 SER A 617 REMARK 465 LYS A 618 REMARK 465 MET A 619 REMARK 465 THR A 620 REMARK 465 LYS A 621 REMARK 465 LYS A 622 REMARK 465 GLU A 623 REMARK 465 ARG A 624 REMARK 465 GLN A 625 REMARK 465 LYS A 626 REMARK 465 VAL A 627 REMARK 465 VAL A 628 REMARK 465 GLU A 629 REMARK 465 GLN A 630 REMARK 465 MET A 631 REMARK 465 GLU A 632 REMARK 465 HIS A 633 REMARK 465 GLU A 634 REMARK 465 MET A 635 REMARK 465 LYS A 636 REMARK 465 GLU A 637 REMARK 465 ALA A 638 REMARK 465 ALA A 639 REMARK 465 LYS A 640 REMARK 465 ALA A 641 REMARK 465 LEU A 642 REMARK 465 ASP A 643 REMARK 465 PHE A 644 REMARK 465 GLU A 645 REMARK 465 ARG A 646 REMARK 465 ALA A 647 REMARK 465 ALA A 648 REMARK 465 GLU A 649 REMARK 465 LEU A 650 REMARK 465 ARG A 651 REMARK 465 ASP A 652 REMARK 465 LEU A 653 REMARK 465 LEU A 654 REMARK 465 LEU A 655 REMARK 465 GLU A 656 REMARK 465 LEU A 657 REMARK 465 LYS A 658 REMARK 465 ALA A 659 REMARK 465 GLU A 660 REMARK 465 GLY A 661 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 248 REMARK 465 PHE B 249 REMARK 465 VAL B 250 REMARK 465 THR B 251 REMARK 465 ARG B 252 REMARK 465 ALA B 253 REMARK 465 GLU B 254 REMARK 465 LYS B 255 REMARK 465 LYS B 590 REMARK 465 GLU B 591 REMARK 465 ILE B 592 REMARK 465 ARG B 593 REMARK 465 ASP B 594 REMARK 465 VAL B 595 REMARK 465 ILE B 596 REMARK 465 ARG B 597 REMARK 465 ALA B 598 REMARK 465 THR B 599 REMARK 465 VAL B 600 REMARK 465 ALA B 601 REMARK 465 ALA B 602 REMARK 465 GLU B 603 REMARK 465 ASP B 604 REMARK 465 LYS B 605 REMARK 465 ALA B 606 REMARK 465 GLU B 607 REMARK 465 TYR B 608 REMARK 465 LYS B 609 REMARK 465 THR B 610 REMARK 465 LYS B 611 REMARK 465 ALA B 612 REMARK 465 ALA B 613 REMARK 465 PRO B 614 REMARK 465 LYS B 615 REMARK 465 LEU B 616 REMARK 465 SER B 617 REMARK 465 LYS B 618 REMARK 465 MET B 619 REMARK 465 THR B 620 REMARK 465 LYS B 621 REMARK 465 LYS B 622 REMARK 465 GLU B 623 REMARK 465 ARG B 624 REMARK 465 GLN B 625 REMARK 465 LYS B 626 REMARK 465 VAL B 627 REMARK 465 VAL B 628 REMARK 465 GLU B 629 REMARK 465 GLN B 630 REMARK 465 MET B 631 REMARK 465 GLU B 632 REMARK 465 HIS B 633 REMARK 465 GLU B 634 REMARK 465 MET B 635 REMARK 465 LYS B 636 REMARK 465 GLU B 637 REMARK 465 ALA B 638 REMARK 465 ALA B 639 REMARK 465 LYS B 640 REMARK 465 ALA B 641 REMARK 465 LEU B 642 REMARK 465 ASP B 643 REMARK 465 PHE B 644 REMARK 465 GLU B 645 REMARK 465 ARG B 646 REMARK 465 ALA B 647 REMARK 465 ALA B 648 REMARK 465 GLU B 649 REMARK 465 LEU B 650 REMARK 465 ARG B 651 REMARK 465 ASP B 652 REMARK 465 LEU B 653 REMARK 465 LEU B 654 REMARK 465 LEU B 655 REMARK 465 GLU B 656 REMARK 465 LEU B 657 REMARK 465 LYS B 658 REMARK 465 ALA B 659 REMARK 465 GLU B 660 REMARK 465 GLY B 661 REMARK 465 DT C 1 REMARK 465 DT D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLN A 29 CG CD OE1 NE2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 TYR A 96 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 THR A 105 OG1 CG2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 MET A 157 CG SD CE REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 ILE A 167 CG1 CG2 CD1 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 170 CG OD1 ND2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 198 CG OD1 OD2 REMARK 470 ASP A 208 CG OD1 OD2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 PHE A 217 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 ILE A 234 CG1 CG2 CD1 REMARK 470 ASP A 239 CG OD1 OD2 REMARK 470 HIS A 240 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 247 OG REMARK 470 HIS A 248 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 250 CG1 CG2 REMARK 470 THR A 251 OG1 CG2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 MET A 256 CG SD CE REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLN A 261 CG CD OE1 NE2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 LEU A 281 CG CD1 CD2 REMARK 470 GLN A 284 CG CD OE1 NE2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 PHE A 302 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 LYS A 384 CG CD CE NZ REMARK 470 ASP A 405 CG OD1 OD2 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 LEU A 421 CG CD1 CD2 REMARK 470 ASP A 423 CG OD1 OD2 REMARK 470 ILE A 427 CG1 CG2 CD1 REMARK 470 GLU A 428 CG CD OE1 OE2 REMARK 470 GLU A 443 CG CD OE1 OE2 REMARK 470 ARG A 444 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 MET A 457 CG SD CE REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 GLU A 467 CG CD OE1 OE2 REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 SER A 477 OG REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 470 ILE A 479 CG1 CG2 CD1 REMARK 470 GLU A 483 CG CD OE1 OE2 REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 ILE A 488 CG1 CG2 CD1 REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 VAL A 498 CG1 CG2 REMARK 470 ARG A 506 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 507 CG CD OE1 OE2 REMARK 470 LEU A 520 CG CD1 CD2 REMARK 470 GLU A 525 CG CD OE1 OE2 REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 554 CG OD1 OD2 REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 GLU A 561 CG CD OE1 OE2 REMARK 470 LYS A 568 CG CD CE NZ REMARK 470 ARG A 576 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 586 CG CD CE NZ REMARK 470 ILE A 588 CG1 CG2 CD1 REMARK 470 ASN A 589 CG OD1 ND2 REMARK 470 LYS A 590 CG CD CE NZ REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 LEU B 7 CG CD1 CD2 REMARK 470 SER B 9 OG REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 TYR B 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 12 CG CD OE1 NE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LEU B 24 CG CD1 CD2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 ILE B 53 CG1 CG2 CD1 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLN B 104 CG CD OE1 NE2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LEU B 130 CG CD1 CD2 REMARK 470 PHE B 131 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 ARG B 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 MET B 157 CG SD CE REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 ARG B 169 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 170 CG OD1 ND2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 ASP B 178 CG OD1 OD2 REMARK 470 GLN B 180 CG CD OE1 NE2 REMARK 470 ASN B 184 CG OD1 ND2 REMARK 470 ASP B 185 CG OD1 OD2 REMARK 470 ILE B 186 CG1 CG2 CD1 REMARK 470 ASP B 187 CG OD1 OD2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 198 CG OD1 OD2 REMARK 470 SER B 206 OG REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 208 CG OD1 OD2 REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 PHE B 216 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 217 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 ARG B 223 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 224 CG1 CG2 CD1 REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 ILE B 234 CG1 CG2 CD1 REMARK 470 LEU B 235 CG CD1 CD2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 239 CG OD1 OD2 REMARK 470 HIS B 240 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 247 OG REMARK 470 MET B 256 CG SD CE REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 GLN B 261 CG CD OE1 NE2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 GLU B 268 CG CD OE1 OE2 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 MET B 296 CG SD CE REMARK 470 PHE B 302 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 313 CG CD1 CD2 REMARK 470 ARG B 316 CG CD NE CZ NH1 NH2 REMARK 470 SER B 320 OG REMARK 470 ASP B 331 CG OD1 OD2 REMARK 470 ASP B 332 CG OD1 OD2 REMARK 470 ASP B 338 CG OD1 OD2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 GLU B 380 CG CD OE1 OE2 REMARK 470 LYS B 384 CG CD CE NZ REMARK 470 GLU B 402 CG CD OE1 OE2 REMARK 470 ASP B 405 CG OD1 OD2 REMARK 470 GLU B 406 CG CD OE1 OE2 REMARK 470 GLU B 409 CG CD OE1 OE2 REMARK 470 ILE B 412 CG1 CG2 CD1 REMARK 470 GLU B 428 CG CD OE1 OE2 REMARK 470 ILE B 438 CG1 CG2 CD1 REMARK 470 ARG B 444 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 446 CG CD OE1 OE2 REMARK 470 LYS B 455 CG CD CE NZ REMARK 470 LYS B 456 CG CD CE NZ REMARK 470 MET B 457 CG SD CE REMARK 470 GLU B 459 CG CD OE1 OE2 REMARK 470 LEU B 461 CG CD1 CD2 REMARK 470 LEU B 465 CG CD1 CD2 REMARK 470 LYS B 471 CG CD CE NZ REMARK 470 SER B 477 OG REMARK 470 ILE B 479 CG1 CG2 CD1 REMARK 470 LYS B 480 CG CD CE NZ REMARK 470 ASP B 490 CG OD1 OD2 REMARK 470 LEU B 493 CG CD1 CD2 REMARK 470 GLU B 507 CG CD OE1 OE2 REMARK 470 GLU B 513 CG CD OE1 OE2 REMARK 470 GLU B 531 CG CD OE1 OE2 REMARK 470 GLN B 536 CG CD OE1 NE2 REMARK 470 GLU B 546 CG CD OE1 OE2 REMARK 470 LYS B 555 CG CD CE NZ REMARK 470 GLU B 561 CG CD OE1 OE2 REMARK 470 LYS B 568 CG CD CE NZ REMARK 470 GLU B 572 CG CD OE1 OE2 REMARK 470 GLN B 574 CG CD OE1 NE2 REMARK 470 GLU B 575 CG CD OE1 OE2 REMARK 470 ARG B 576 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 579 CG CD OE1 OE2 REMARK 470 GLU B 580 CG CD OE1 OE2 REMARK 470 LYS B 586 CG CD CE NZ REMARK 470 ASN B 589 CG OD1 ND2 REMARK 470 DA C 2 P OP1 OP2 REMARK 470 DT C 8 C2 O2 N3 C4 O4 C5 C7 REMARK 470 DT C 8 C6 REMARK 470 DA D 2 P OP1 OP2 REMARK 470 DT D 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT D 8 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT D 8 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 33 C - N - CA ANGL. DEV. = 16.6 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DT C 6 N3 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT C 6 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT C 7 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA D 2 C3' - C2' - C1' ANGL. DEV. = -6.3 DEGREES REMARK 500 DA D 2 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DC D 3 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 6 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DT D 6 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 DT D 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT D 7 C4 - C5 - C7 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT D 7 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 33 -75.12 -80.87 REMARK 500 ASN A 57 74.13 41.60 REMARK 500 VAL A 142 -6.72 -57.76 REMARK 500 MET A 157 20.67 -78.35 REMARK 500 ARG A 196 -85.03 -79.71 REMARK 500 ASP A 198 34.87 -90.13 REMARK 500 ASP A 208 89.37 62.61 REMARK 500 GLU A 209 70.10 -56.89 REMARK 500 ASP A 219 9.33 -158.36 REMARK 500 LEU A 235 -18.91 -36.66 REMARK 500 PHE A 249 -56.93 -137.36 REMARK 500 VAL A 250 93.81 40.86 REMARK 500 GLU A 276 22.99 -73.55 REMARK 500 GLU A 299 -72.66 -78.89 REMARK 500 LEU A 315 17.75 57.19 REMARK 500 PRO A 420 170.86 -57.93 REMARK 500 LEU A 482 -53.37 -166.30 REMARK 500 ASN A 503 82.59 78.03 REMARK 500 THR A 587 -99.44 -27.45 REMARK 500 ILE A 588 19.81 -66.83 REMARK 500 ASN A 589 176.08 72.10 REMARK 500 LYS B 33 -85.05 120.45 REMARK 500 ASN B 57 75.26 41.91 REMARK 500 VAL B 142 -6.89 -57.70 REMARK 500 THR B 163 -93.50 -44.45 REMARK 500 MET B 165 -83.34 44.70 REMARK 500 GLU B 166 104.45 78.16 REMARK 500 ILE B 179 -128.68 -83.50 REMARK 500 ARG B 190 125.19 -38.97 REMARK 500 ARG B 194 -72.28 -102.08 REMARK 500 VAL B 195 95.29 81.63 REMARK 500 ARG B 196 -109.56 -98.47 REMARK 500 ASP B 198 34.10 -89.63 REMARK 500 ALA B 205 -92.32 -29.43 REMARK 500 ARG B 207 -34.35 26.84 REMARK 500 ASP B 219 2.82 -161.08 REMARK 500 LEU B 235 -18.51 -35.88 REMARK 500 GLU B 299 -73.50 -79.32 REMARK 500 LEU B 315 16.13 58.55 REMARK 500 PRO B 420 170.65 -57.24 REMARK 500 GLU B 525 108.62 53.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ADP B 701 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 701 DBREF 3V4R A 1 661 UNP P37954 UVRB_BACSU 1 661 DBREF 3V4R B 1 661 UNP P37954 UVRB_BACSU 1 661 DBREF 3V4R C 1 8 PDB 3V4R 3V4R 1 8 DBREF 3V4R D 1 8 PDB 3V4R 3V4R 1 8 SEQADV 3V4R HIS A -5 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS A -4 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS A -3 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS A -2 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS A -1 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS A 0 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS B -5 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS B -4 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS B -3 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS B -2 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS B -1 UNP P37954 EXPRESSION TAG SEQADV 3V4R HIS B 0 UNP P37954 EXPRESSION TAG SEQRES 1 A 667 HIS HIS HIS HIS HIS HIS MET LYS ASP ARG PHE GLU LEU SEQRES 2 A 667 VAL SER LYS TYR GLN PRO GLN GLY ASP GLN PRO LYS ALA SEQRES 3 A 667 ILE GLU LYS LEU VAL LYS GLY ILE GLN GLU GLY LYS LYS SEQRES 4 A 667 HIS GLN THR LEU LEU GLY ALA THR GLY THR GLY LYS THR SEQRES 5 A 667 PHE THR VAL SER ASN LEU ILE LYS GLU VAL ASN LYS PRO SEQRES 6 A 667 THR LEU VAL ILE ALA HIS ASN LYS THR LEU ALA GLY GLN SEQRES 7 A 667 LEU TYR SER GLU PHE LYS GLU PHE PHE PRO ASN ASN ALA SEQRES 8 A 667 VAL GLU TYR PHE VAL SER TYR TYR ASP TYR TYR GLN PRO SEQRES 9 A 667 GLU ALA TYR VAL PRO GLN THR ASP THR PHE ILE GLU LYS SEQRES 10 A 667 ASP ALA SER ILE ASN ASP GLU ILE ASP LYS LEU ARG HIS SEQRES 11 A 667 SER ALA THR SER ALA LEU PHE GLU ARG ARG ASP VAL ILE SEQRES 12 A 667 ILE ILE ALA SER VAL SER CYS ILE TYR GLY LEU GLY SER SEQRES 13 A 667 PRO GLU GLU TYR ARG GLU MET VAL VAL SER LEU ARG THR SEQRES 14 A 667 GLU MET GLU ILE GLU ARG ASN GLU LEU LEU ARG LYS LEU SEQRES 15 A 667 VAL ASP ILE GLN TYR ALA ARG ASN ASP ILE ASP PHE GLN SEQRES 16 A 667 ARG GLY THR PHE ARG VAL ARG GLY ASP VAL VAL GLU ILE SEQRES 17 A 667 PHE PRO ALA SER ARG ASP GLU HIS CYS VAL ARG VAL GLU SEQRES 18 A 667 PHE PHE GLY ASP GLU ILE GLU ARG ILE ARG GLU VAL ASP SEQRES 19 A 667 ALA LEU THR GLY GLU ILE LEU GLY ASP ARG ASP HIS VAL SEQRES 20 A 667 ALA ILE PHE PRO ALA SER HIS PHE VAL THR ARG ALA GLU SEQRES 21 A 667 LYS MET GLU LYS ALA ILE GLN ASN ILE GLU LYS GLU LEU SEQRES 22 A 667 GLU GLU GLN LEU LYS VAL MET HIS GLU ASN GLY LYS LEU SEQRES 23 A 667 LEU GLU ALA GLN ARG LEU GLU GLN ARG THR ARG TYR ASP SEQRES 24 A 667 LEU GLU MET MET ARG GLU MET GLY PHE CYS SER GLY ILE SEQRES 25 A 667 GLU ASN TYR SER ARG HIS LEU THR LEU ARG PRO PRO GLY SEQRES 26 A 667 SER THR PRO TYR THR LEU LEU ASP TYR PHE PRO ASP ASP SEQRES 27 A 667 PHE MET ILE VAL VAL ASP GLU SER HIS VAL THR ILE PRO SEQRES 28 A 667 GLN VAL ARG GLY MET PHE ASN GLY ASP GLN ALA ARG LYS SEQRES 29 A 667 GLN VAL LEU VAL ASP HIS GLY PHE ARG LEU PRO SER ALA SEQRES 30 A 667 LEU ASP ASN ARG PRO LEU ARG PHE GLU GLU PHE GLU LYS SEQRES 31 A 667 HIS MET HIS ASN ILE VAL TYR VAL SER ALA THR PRO GLY SEQRES 32 A 667 PRO TYR GLU ILE GLU HIS THR ASP GLU MET VAL GLU GLN SEQRES 33 A 667 ILE ILE ARG PRO THR GLY LEU LEU ASP PRO LEU ILE ASP SEQRES 34 A 667 VAL ARG PRO ILE GLU GLY GLN ILE ASP ASP LEU ILE GLY SEQRES 35 A 667 GLU ILE GLN ALA ARG ILE GLU ARG ASN GLU ARG VAL LEU SEQRES 36 A 667 VAL THR THR LEU THR LYS LYS MET SER GLU ASP LEU THR SEQRES 37 A 667 ASP TYR LEU LYS GLU ILE GLY ILE LYS VAL ASN TYR LEU SEQRES 38 A 667 HIS SER GLU ILE LYS THR LEU GLU ARG ILE GLU ILE ILE SEQRES 39 A 667 ARG ASP LEU ARG LEU GLY LYS TYR ASP VAL LEU VAL GLY SEQRES 40 A 667 ILE ASN LEU LEU ARG GLU GLY LEU ASP ILE PRO GLU VAL SEQRES 41 A 667 SER LEU VAL ALA ILE LEU ASP ALA ASP LYS GLU GLY PHE SEQRES 42 A 667 LEU ARG SER GLU ARG SER LEU ILE GLN THR ILE GLY ARG SEQRES 43 A 667 ALA ALA ARG ASN ALA GLU GLY ARG VAL ILE MET TYR ALA SEQRES 44 A 667 ASP LYS ILE THR LYS SER MET GLU ILE ALA ILE ASN GLU SEQRES 45 A 667 THR LYS ARG ARG ARG GLU GLN GLN GLU ARG PHE ASN GLU SEQRES 46 A 667 GLU HIS GLY ILE THR PRO LYS THR ILE ASN LYS GLU ILE SEQRES 47 A 667 ARG ASP VAL ILE ARG ALA THR VAL ALA ALA GLU ASP LYS SEQRES 48 A 667 ALA GLU TYR LYS THR LYS ALA ALA PRO LYS LEU SER LYS SEQRES 49 A 667 MET THR LYS LYS GLU ARG GLN LYS VAL VAL GLU GLN MET SEQRES 50 A 667 GLU HIS GLU MET LYS GLU ALA ALA LYS ALA LEU ASP PHE SEQRES 51 A 667 GLU ARG ALA ALA GLU LEU ARG ASP LEU LEU LEU GLU LEU SEQRES 52 A 667 LYS ALA GLU GLY SEQRES 1 B 667 HIS HIS HIS HIS HIS HIS MET LYS ASP ARG PHE GLU LEU SEQRES 2 B 667 VAL SER LYS TYR GLN PRO GLN GLY ASP GLN PRO LYS ALA SEQRES 3 B 667 ILE GLU LYS LEU VAL LYS GLY ILE GLN GLU GLY LYS LYS SEQRES 4 B 667 HIS GLN THR LEU LEU GLY ALA THR GLY THR GLY LYS THR SEQRES 5 B 667 PHE THR VAL SER ASN LEU ILE LYS GLU VAL ASN LYS PRO SEQRES 6 B 667 THR LEU VAL ILE ALA HIS ASN LYS THR LEU ALA GLY GLN SEQRES 7 B 667 LEU TYR SER GLU PHE LYS GLU PHE PHE PRO ASN ASN ALA SEQRES 8 B 667 VAL GLU TYR PHE VAL SER TYR TYR ASP TYR TYR GLN PRO SEQRES 9 B 667 GLU ALA TYR VAL PRO GLN THR ASP THR PHE ILE GLU LYS SEQRES 10 B 667 ASP ALA SER ILE ASN ASP GLU ILE ASP LYS LEU ARG HIS SEQRES 11 B 667 SER ALA THR SER ALA LEU PHE GLU ARG ARG ASP VAL ILE SEQRES 12 B 667 ILE ILE ALA SER VAL SER CYS ILE TYR GLY LEU GLY SER SEQRES 13 B 667 PRO GLU GLU TYR ARG GLU MET VAL VAL SER LEU ARG THR SEQRES 14 B 667 GLU MET GLU ILE GLU ARG ASN GLU LEU LEU ARG LYS LEU SEQRES 15 B 667 VAL ASP ILE GLN TYR ALA ARG ASN ASP ILE ASP PHE GLN SEQRES 16 B 667 ARG GLY THR PHE ARG VAL ARG GLY ASP VAL VAL GLU ILE SEQRES 17 B 667 PHE PRO ALA SER ARG ASP GLU HIS CYS VAL ARG VAL GLU SEQRES 18 B 667 PHE PHE GLY ASP GLU ILE GLU ARG ILE ARG GLU VAL ASP SEQRES 19 B 667 ALA LEU THR GLY GLU ILE LEU GLY ASP ARG ASP HIS VAL SEQRES 20 B 667 ALA ILE PHE PRO ALA SER HIS PHE VAL THR ARG ALA GLU SEQRES 21 B 667 LYS MET GLU LYS ALA ILE GLN ASN ILE GLU LYS GLU LEU SEQRES 22 B 667 GLU GLU GLN LEU LYS VAL MET HIS GLU ASN GLY LYS LEU SEQRES 23 B 667 LEU GLU ALA GLN ARG LEU GLU GLN ARG THR ARG TYR ASP SEQRES 24 B 667 LEU GLU MET MET ARG GLU MET GLY PHE CYS SER GLY ILE SEQRES 25 B 667 GLU ASN TYR SER ARG HIS LEU THR LEU ARG PRO PRO GLY SEQRES 26 B 667 SER THR PRO TYR THR LEU LEU ASP TYR PHE PRO ASP ASP SEQRES 27 B 667 PHE MET ILE VAL VAL ASP GLU SER HIS VAL THR ILE PRO SEQRES 28 B 667 GLN VAL ARG GLY MET PHE ASN GLY ASP GLN ALA ARG LYS SEQRES 29 B 667 GLN VAL LEU VAL ASP HIS GLY PHE ARG LEU PRO SER ALA SEQRES 30 B 667 LEU ASP ASN ARG PRO LEU ARG PHE GLU GLU PHE GLU LYS SEQRES 31 B 667 HIS MET HIS ASN ILE VAL TYR VAL SER ALA THR PRO GLY SEQRES 32 B 667 PRO TYR GLU ILE GLU HIS THR ASP GLU MET VAL GLU GLN SEQRES 33 B 667 ILE ILE ARG PRO THR GLY LEU LEU ASP PRO LEU ILE ASP SEQRES 34 B 667 VAL ARG PRO ILE GLU GLY GLN ILE ASP ASP LEU ILE GLY SEQRES 35 B 667 GLU ILE GLN ALA ARG ILE GLU ARG ASN GLU ARG VAL LEU SEQRES 36 B 667 VAL THR THR LEU THR LYS LYS MET SER GLU ASP LEU THR SEQRES 37 B 667 ASP TYR LEU LYS GLU ILE GLY ILE LYS VAL ASN TYR LEU SEQRES 38 B 667 HIS SER GLU ILE LYS THR LEU GLU ARG ILE GLU ILE ILE SEQRES 39 B 667 ARG ASP LEU ARG LEU GLY LYS TYR ASP VAL LEU VAL GLY SEQRES 40 B 667 ILE ASN LEU LEU ARG GLU GLY LEU ASP ILE PRO GLU VAL SEQRES 41 B 667 SER LEU VAL ALA ILE LEU ASP ALA ASP LYS GLU GLY PHE SEQRES 42 B 667 LEU ARG SER GLU ARG SER LEU ILE GLN THR ILE GLY ARG SEQRES 43 B 667 ALA ALA ARG ASN ALA GLU GLY ARG VAL ILE MET TYR ALA SEQRES 44 B 667 ASP LYS ILE THR LYS SER MET GLU ILE ALA ILE ASN GLU SEQRES 45 B 667 THR LYS ARG ARG ARG GLU GLN GLN GLU ARG PHE ASN GLU SEQRES 46 B 667 GLU HIS GLY ILE THR PRO LYS THR ILE ASN LYS GLU ILE SEQRES 47 B 667 ARG ASP VAL ILE ARG ALA THR VAL ALA ALA GLU ASP LYS SEQRES 48 B 667 ALA GLU TYR LYS THR LYS ALA ALA PRO LYS LEU SER LYS SEQRES 49 B 667 MET THR LYS LYS GLU ARG GLN LYS VAL VAL GLU GLN MET SEQRES 50 B 667 GLU HIS GLU MET LYS GLU ALA ALA LYS ALA LEU ASP PHE SEQRES 51 B 667 GLU ARG ALA ALA GLU LEU ARG ASP LEU LEU LEU GLU LEU SEQRES 52 B 667 LYS ALA GLU GLY SEQRES 1 C 8 DT DA DC DT DG DT DT DT SEQRES 1 D 8 DT DA DC DT DG DT DT DT HET ADP A 701 27 HET ADP B 701 8 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 5 ADP 2(C10 H15 N5 O10 P2) HELIX 1 1 ASP A 16 GLU A 30 1 15 HELIX 2 2 GLY A 44 ASN A 57 1 14 HELIX 3 3 ASN A 66 PHE A 81 1 16 HELIX 4 4 ASN A 116 ARG A 133 1 18 HELIX 5 5 VAL A 142 TYR A 146 5 5 HELIX 6 6 SER A 150 MET A 157 1 8 HELIX 7 7 GLU A 168 ASP A 178 1 11 HELIX 8 8 LYS A 255 GLU A 276 1 22 HELIX 9 9 LYS A 279 MET A 300 1 22 HELIX 10 10 GLY A 305 ASN A 308 5 4 HELIX 11 11 TYR A 309 THR A 314 1 6 HELIX 12 12 THR A 324 PHE A 329 5 6 HELIX 13 13 GLU A 339 HIS A 364 1 26 HELIX 14 14 LEU A 368 ASN A 374 5 7 HELIX 15 15 ARG A 378 LYS A 384 1 7 HELIX 16 16 GLY A 397 THR A 404 1 8 HELIX 17 17 GLY A 429 ARG A 444 1 16 HELIX 18 18 THR A 454 GLY A 469 1 16 HELIX 19 19 LEU A 482 GLY A 494 1 13 HELIX 20 20 GLY A 526 ARG A 529 5 4 HELIX 21 21 SER A 530 GLY A 539 1 10 HELIX 22 22 ARG A 540 ALA A 542 5 3 HELIX 23 23 THR A 557 HIS A 581 1 25 HELIX 24 24 ASP B 16 GLU B 30 1 15 HELIX 25 25 GLY B 44 ASN B 57 1 14 HELIX 26 26 ASN B 66 PHE B 81 1 16 HELIX 27 27 ASN B 116 ARG B 133 1 18 HELIX 28 28 VAL B 142 TYR B 146 5 5 HELIX 29 29 SER B 150 VAL B 158 1 9 HELIX 30 30 GLU B 168 ILE B 179 1 12 HELIX 31 31 GLU B 257 ASN B 277 1 21 HELIX 32 32 LYS B 279 MET B 300 1 22 HELIX 33 33 GLY B 305 ASN B 308 5 4 HELIX 34 34 TYR B 309 THR B 314 1 6 HELIX 35 35 THR B 324 PHE B 329 5 6 HELIX 36 36 GLU B 339 HIS B 364 1 26 HELIX 37 37 LEU B 368 ASN B 374 5 7 HELIX 38 38 ARG B 378 LYS B 384 1 7 HELIX 39 39 GLY B 397 THR B 404 1 8 HELIX 40 40 GLY B 429 ARG B 444 1 16 HELIX 41 41 THR B 454 GLY B 469 1 16 HELIX 42 42 LYS B 480 GLY B 494 1 15 HELIX 43 43 GLY B 526 ARG B 529 5 4 HELIX 44 44 SER B 530 GLY B 539 1 10 HELIX 45 45 ARG B 540 ALA B 542 5 3 HELIX 46 46 THR B 557 HIS B 581 1 25 SHEET 1 A 7 ALA A 85 PHE A 89 0 SHEET 2 A 7 VAL A 136 ALA A 140 1 O ILE A 137 N GLU A 87 SHEET 3 A 7 THR A 60 ILE A 63 1 N VAL A 62 O ALA A 140 SHEET 4 A 7 MET A 334 ASP A 338 1 O VAL A 336 N LEU A 61 SHEET 5 A 7 ASN A 388 SER A 393 1 O VAL A 392 N VAL A 337 SHEET 6 A 7 HIS A 34 GLY A 39 1 N LEU A 37 O TYR A 391 SHEET 7 A 7 VAL A 408 GLN A 410 1 O GLN A 410 N LEU A 38 SHEET 1 B 2 TYR A 93 GLN A 97 0 SHEET 2 B 2 ASP A 112 ILE A 115 -1 O SER A 114 N ASP A 94 SHEET 1 C 2 ALA A 100 VAL A 102 0 SHEET 2 C 2 THR A 107 ILE A 109 -1 O ILE A 109 N ALA A 100 SHEET 1 D 2 VAL A 159 ARG A 162 0 SHEET 2 D 2 HIS A 240 ILE A 243 -1 O VAL A 241 N LEU A 161 SHEET 1 E 6 ALA A 182 ARG A 183 0 SHEET 2 E 6 THR A 192 VAL A 195 1 O PHE A 193 N ALA A 182 SHEET 3 E 6 VAL A 199 PHE A 203 -1 O PHE A 203 N THR A 192 SHEET 4 E 6 HIS A 210 PHE A 216 -1 O VAL A 212 N ILE A 202 SHEET 5 E 6 ILE A 221 ASP A 228 -1 O ARG A 223 N GLU A 215 SHEET 6 E 6 GLY A 236 ARG A 238 -1 O ARG A 238 N ILE A 224 SHEET 1 F 6 LEU A 421 ARG A 425 0 SHEET 2 F 6 ARG A 548 TYR A 552 1 O MET A 551 N ARG A 425 SHEET 3 F 6 VAL A 514 LEU A 520 1 N ILE A 519 O ILE A 550 SHEET 4 F 6 ARG A 447 THR A 451 1 N LEU A 449 O ALA A 518 SHEET 5 F 6 VAL A 498 VAL A 500 1 O LEU A 499 N VAL A 450 SHEET 6 F 6 VAL A 472 TYR A 474 1 N ASN A 473 O VAL A 500 SHEET 1 G 7 ALA B 85 PHE B 89 0 SHEET 2 G 7 VAL B 136 ALA B 140 1 O ILE B 137 N GLU B 87 SHEET 3 G 7 THR B 60 ILE B 63 1 N VAL B 62 O ALA B 140 SHEET 4 G 7 MET B 334 ASP B 338 1 O VAL B 336 N LEU B 61 SHEET 5 G 7 ASN B 388 SER B 393 1 O VAL B 392 N VAL B 337 SHEET 6 G 7 GLN B 35 GLY B 39 1 N LEU B 37 O TYR B 391 SHEET 7 G 7 VAL B 408 GLN B 410 1 O GLN B 410 N LEU B 38 SHEET 1 H 2 TYR B 93 GLN B 97 0 SHEET 2 H 2 ASP B 112 ILE B 115 -1 O SER B 114 N ASP B 94 SHEET 1 I 2 ALA B 100 VAL B 102 0 SHEET 2 I 2 THR B 107 ILE B 109 -1 O ILE B 109 N ALA B 100 SHEET 1 J 2 VAL B 159 ARG B 162 0 SHEET 2 J 2 HIS B 240 ILE B 243 -1 O VAL B 241 N LEU B 161 SHEET 1 K 2 ALA B 182 ARG B 183 0 SHEET 2 K 2 THR B 192 PHE B 193 1 O PHE B 193 N ALA B 182 SHEET 1 L 4 VAL B 199 ILE B 202 0 SHEET 2 L 4 HIS B 210 PHE B 217 -1 O VAL B 214 N VAL B 200 SHEET 3 L 4 GLU B 220 ASP B 228 -1 O ARG B 223 N GLU B 215 SHEET 4 L 4 GLY B 236 ARG B 238 -1 O ARG B 238 N ILE B 224 SHEET 1 M 6 LEU B 421 ARG B 425 0 SHEET 2 M 6 ARG B 548 TYR B 552 1 O VAL B 549 N LEU B 421 SHEET 3 M 6 VAL B 514 LEU B 520 1 N ILE B 519 O ILE B 550 SHEET 4 M 6 ARG B 447 THR B 451 1 N LEU B 449 O ALA B 518 SHEET 5 M 6 VAL B 498 GLY B 501 1 O LEU B 499 N VAL B 450 SHEET 6 M 6 VAL B 472 TYR B 474 1 N ASN B 473 O VAL B 500 CISPEP 1 LYS B 32 LYS B 33 0 19.85 SITE 1 AC1 10 TYR A 11 GLN A 12 GLN A 17 GLY A 42 SITE 2 AC1 10 GLY A 44 LYS A 45 THR A 46 PHE A 47 SITE 3 AC1 10 GLU A 76 ARG A 543 SITE 1 AC2 4 GLY B 42 GLY B 44 LYS B 45 THR B 46 CRYST1 95.940 100.310 163.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006111 0.00000