PDB Short entry for 3V6K HEADER TRANSFERASE/DNA 20-DEC-11 3V6K TITLE REPLICATION OF N2,3-ETHENOGUANINE BY DNA POLYMERASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, J; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*GP*AP*AP*GP*GP*AP*TP*TP*CP*(2DT))-3'); COMPND 9 CHAIN: P, K; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PRIMER; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*TP*CP*AP*CP*(EFG)P*GP*AP*AP*TP*CP*CP*TP*TP*C)- COMPND 14 3'); COMPND 15 CHAIN: B, M; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: TEMPLATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: ATCC 35092 / DSM 1617 / JCM 11322 / P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: BASED ON PREVIOUSLY CRYSTALLIZATION SEQUENCE.; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: BASED ON PREVIOUSLY CRYSTALLIZATION SEQUENCE. KEYWDS SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV, DPO4, ETHENOGUANINE, DNA KEYWDS 2 ADDUCT, DNA LESION, DNA POLYMERASE, DNA REPLICATION, LESION BYPASS, KEYWDS 3 2'-FLUORO ARABINOSE, N2, 3-ETHENOGUANINE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.ZHAO REVDAT 3 13-SEP-23 3V6K 1 REMARK DBREF SEQADV LINK REVDAT 2 06-JUN-12 3V6K 1 JRNL REVDAT 1 25-APR-12 3V6K 0 JRNL AUTH L.ZHAO,P.P.CHRISTOV,I.D.KOZEKOV,M.G.PENCE,P.S.PALLAN, JRNL AUTH 2 C.J.RIZZO,M.EGLI,F.P.GUENGERICH JRNL TITL REPLICATION OF N(2) ,3-ETHENOGUANINE BY DNA POLYMERASES. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 51 5466 2012 JRNL REFN ISSN 1433-7851 JRNL PMID 22488769 JRNL DOI 10.1002/ANIE.201109004 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1027 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 873 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5097 REMARK 3 NUCLEIC ACID ATOMS : 958 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.81000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 5.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.805 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.619 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 87.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6270 ; 0.011 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8656 ; 1.596 ; 1.899 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 670 ; 6.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;39.569 ;23.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 941 ;21.922 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.270 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 972 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4291 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 342 REMARK 3 RESIDUE RANGE : B 1 B 14 REMARK 3 RESIDUE RANGE : P 5 P 14 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7850 -0.6093 44.5967 REMARK 3 T TENSOR REMARK 3 T11: 0.5069 T22: 0.5043 REMARK 3 T33: 0.4168 T12: -0.0407 REMARK 3 T13: -0.0099 T23: -0.0804 REMARK 3 L TENSOR REMARK 3 L11: 4.7343 L22: 2.9990 REMARK 3 L33: 1.0563 L12: 0.6938 REMARK 3 L13: -1.0321 L23: -0.2694 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: 0.8275 S13: -0.4441 REMARK 3 S21: -0.3606 S22: 0.1674 S23: 0.0271 REMARK 3 S31: 0.0180 S32: -0.2449 S33: -0.0613 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 1 J 342 REMARK 3 RESIDUE RANGE : M 2 M 14 REMARK 3 RESIDUE RANGE : K 5 K 14 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2471 -1.3901 87.9246 REMARK 3 T TENSOR REMARK 3 T11: 0.2814 T22: 0.5604 REMARK 3 T33: 0.0690 T12: -0.1184 REMARK 3 T13: 0.0224 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 5.5406 L22: 2.1601 REMARK 3 L33: 2.4980 L12: -1.0065 REMARK 3 L13: -0.7420 L23: -1.0990 REMARK 3 S TENSOR REMARK 3 S11: 0.1108 S12: -1.1004 S13: -0.3286 REMARK 3 S21: 0.3448 S22: -0.0590 S23: -0.0322 REMARK 3 S31: -0.4673 S32: 0.0897 S33: -0.0517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3V6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12944 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.6.0117 REMARK 200 STARTING MODEL: 3V6J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 UM DPO4, 240 UM PRIMER-TEMPLATE REMARK 280 DNA COMPLEX, 5 MM MGCL2, 1 MM DCTP, 20 MM TRIS-HCL (PH 7.4), 60 REMARK 280 MM NACL, 2% GLYCEROL (V/V), AND 5 MM -MERCAPTOETHANOL. REMARK 280 PRECIPITANT: 0.1M TRIS-HCL (PH 7.4), 15% POLYETHYLENE GLYCOL REMARK 280 3350 (W/V), 0.1 M CA(CH3COO)2, AND 2% GLYCEROL (V/V), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.47650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS J -4 REMARK 465 HIS J -3 REMARK 465 HIS J -2 REMARK 465 HIS J -1 REMARK 465 HIS J 0 REMARK 465 VAL J 3 REMARK 465 LEU J 4 REMARK 465 ILE J 111 REMARK 465 SER J 112 REMARK 465 ASP J 113 REMARK 465 LYS J 114 REMARK 465 VAL J 115 REMARK 465 ARG J 116 REMARK 465 DT M 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LEU A 293 CG CD1 CD2 REMARK 470 ASP J 9 CG OD1 OD2 REMARK 470 TYR J 10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU J 23 CG CD1 CD2 REMARK 470 LYS J 24 CG CD CE NZ REMARK 470 LYS J 26 CG CD CE NZ REMARK 470 PHE J 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG J 36 CG CD NE CZ NH1 NH2 REMARK 470 PHE J 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU J 38 CG CD OE1 OE2 REMARK 470 ASP J 39 CG OD1 OD2 REMARK 470 TYR J 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS J 66 CG CD CE NZ REMARK 470 LYS J 78 CG CD CE NZ REMARK 470 GLU J 79 CG CD OE1 OE2 REMARK 470 VAL J 84 CG1 CG2 REMARK 470 LEU J 92 CG CD1 CD2 REMARK 470 ARG J 93 CG CD NE CZ NH1 NH2 REMARK 470 TYR J 95 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU J 97 CG CD OE1 OE2 REMARK 470 ILE J 99 CG1 CG2 CD1 REMARK 470 ILE J 101 CG1 CG2 CD1 REMARK 470 TYR J 118 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR J 122 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN J 123 CG OD1 ND2 REMARK 470 LEU J 124 CG CD1 CD2 REMARK 470 GLU J 127 CG CD OE1 OE2 REMARK 470 ILE J 128 CG1 CG2 CD1 REMARK 470 ASN J 130 CG OD1 ND2 REMARK 470 LYS J 131 CG CD CE NZ REMARK 470 LEU J 133 CG CD1 CD2 REMARK 470 GLU J 134 CG CD OE1 OE2 REMARK 470 LYS J 135 CG CD CE NZ REMARK 470 GLU J 136 CG CD OE1 OE2 REMARK 470 LYS J 137 CG CD CE NZ REMARK 470 ILE J 138 CG1 CG2 CD1 REMARK 470 VAL J 142 CG1 CG2 REMARK 470 ILE J 144 CG1 CG2 CD1 REMARK 470 LYS J 146 CG CD CE NZ REMARK 470 LYS J 148 CG CD CE NZ REMARK 470 PHE J 150 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS J 152 CG CD CE NZ REMARK 470 LYS J 159 CG CD CE NZ REMARK 470 ILE J 163 CG1 CG2 CD1 REMARK 470 GLU J 170 CG CD OE1 OE2 REMARK 470 ARG J 173 CG CD NE CZ NH1 NH2 REMARK 470 ARG J 176 CG CD NE CZ NH1 NH2 REMARK 470 GLU J 177 CG CD OE1 OE2 REMARK 470 LYS J 193 CG CD CE NZ REMARK 470 LYS J 196 CG CD CE NZ REMARK 470 LEU J 197 CG CD1 CD2 REMARK 470 ASN J 200 CG OD1 ND2 REMARK 470 LYS J 201 CG CD CE NZ REMARK 470 LEU J 206 CG CD1 CD2 REMARK 470 SER J 207 OG REMARK 470 ILE J 208 CG1 CG2 CD1 REMARK 470 GLU J 209 CG CD OE1 OE2 REMARK 470 PHE J 210 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS J 212 CG CD CE NZ REMARK 470 GLU J 219 CG CD OE1 OE2 REMARK 470 LYS J 223 CG CD CE NZ REMARK 470 LEU J 225 CG CD1 CD2 REMARK 470 ARG J 230 CG CD NE CZ NH1 NH2 REMARK 470 GLU J 232 CG CD OE1 OE2 REMARK 470 ASN J 234 CG OD1 ND2 REMARK 470 ARG J 240 CG CD NE CZ NH1 NH2 REMARK 470 VAL J 241 CG1 CG2 REMARK 470 LYS J 252 CG CD CE NZ REMARK 470 ARG J 253 CD NE CZ NH1 NH2 REMARK 470 LYS J 262 CG CD CE NZ REMARK 470 ARG J 267 CG CD NE CZ NH1 NH2 REMARK 470 GLU J 291 CG CD OE1 OE2 REMARK 470 LYS J 317 CG CD CE NZ REMARK 470 LYS J 321 CG CD CE NZ REMARK 470 ASP J 326 CG OD1 OD2 REMARK 470 GLU J 327 CG CD OE1 OE2 REMARK 470 LYS J 329 CG CD CE NZ REMARK 470 GLU J 342 CA C O CB CG CD OE1 REMARK 470 GLU J 342 OE2 REMARK 470 DC M 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE J 37 N - CA - C ANGL. DEV. = 25.9 DEGREES REMARK 500 GLU J 38 N - CA - CB ANGL. DEV. = 24.7 DEGREES REMARK 500 GLU J 38 N - CA - C ANGL. DEV. = -21.7 DEGREES REMARK 500 PHE J 210 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 GLY J 215 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 DT P 11 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DC P 13 C3' - O3' - P ANGL. DEV. = 34.2 DEGREES REMARK 500 2DT P 14 O3' - P - O5' ANGL. DEV. = -25.8 DEGREES REMARK 500 2DT P 14 O3' - P - OP2 ANGL. DEV. = 9.0 DEGREES REMARK 500 DC K 13 C3' - O3' - P ANGL. DEV. = 30.7 DEGREES REMARK 500 2DT K 14 O3' - P - O5' ANGL. DEV. = -21.8 DEGREES REMARK 500 2DT K 14 O3' - P - OP2 ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 74.50 -0.82 REMARK 500 PRO A 21 1.06 -68.63 REMARK 500 LYS A 24 121.79 -39.29 REMARK 500 VAL A 32 79.38 -117.24 REMARK 500 PHE A 37 38.08 144.11 REMARK 500 GLU A 38 75.88 65.35 REMARK 500 ASP A 39 2.89 113.80 REMARK 500 THR A 45 166.70 174.46 REMARK 500 ILE A 67 -65.10 -102.43 REMARK 500 ASP A 117 105.27 93.46 REMARK 500 SER A 145 173.62 175.24 REMARK 500 ASN A 161 42.78 32.39 REMARK 500 GLU A 169 -68.93 -25.40 REMARK 500 ASP A 231 -1.31 76.12 REMARK 500 ASN A 234 111.11 -162.81 REMARK 500 ILE A 237 87.15 -69.21 REMARK 500 ARG A 238 174.13 -54.49 REMARK 500 ARG A 240 122.04 -36.14 REMARK 500 ARG A 242 137.43 -35.43 REMARK 500 LYS A 252 3.33 -66.26 REMARK 500 ARG A 253 149.94 -174.56 REMARK 500 GLU A 259 -39.51 -39.57 REMARK 500 ASP A 277 -119.49 57.93 REMARK 500 GLU A 291 -18.68 -43.84 REMARK 500 LEU A 293 12.48 121.75 REMARK 500 ASP A 294 9.86 -66.87 REMARK 500 ILE A 295 50.83 30.61 REMARK 500 SER A 313 -90.15 66.57 REMARK 500 GLU A 324 9.57 145.11 REMARK 500 GLU A 325 -62.39 -103.94 REMARK 500 ASP A 326 -80.87 -71.72 REMARK 500 GLU A 327 5.92 122.85 REMARK 500 ALA J 13 -64.58 72.52 REMARK 500 SER J 34 -65.37 -94.91 REMARK 500 PHE J 37 -61.54 72.10 REMARK 500 GLU J 38 165.22 172.86 REMARK 500 ASP J 39 79.72 -43.29 REMARK 500 ALA J 42 175.50 176.07 REMARK 500 ARG J 77 56.18 -106.45 REMARK 500 TYR J 95 7.76 -152.26 REMARK 500 SER J 96 122.79 157.46 REMARK 500 LYS J 98 42.31 -98.14 REMARK 500 SER J 103 113.09 -175.94 REMARK 500 ILE J 104 -80.14 28.65 REMARK 500 TYR J 118 -167.83 -101.86 REMARK 500 TYR J 122 22.15 45.33 REMARK 500 ASN J 123 -30.44 -139.41 REMARK 500 LEU J 133 6.81 -59.06 REMARK 500 GLU J 134 -34.82 -133.51 REMARK 500 ILE J 163 35.67 -145.78 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 105 OD2 91.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 72.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG J 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP J 7 OD1 REMARK 620 2 2DT K 14 OP2 139.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG J 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP J 7 OD2 REMARK 620 2 PHE J 8 O 88.4 REMARK 620 3 ASP J 105 OD2 101.5 80.2 REMARK 620 4 HOH J 502 O 114.2 131.9 130.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA J 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA J 181 O REMARK 620 2 ILE J 186 O 69.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA J 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP J 294 OD1 REMARK 620 2 ASP J 294 OD2 44.8 REMARK 620 3 DA K 10 OP2 96.9 141.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG J 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA J 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG J 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA J 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA J 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA P 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V6J RELATED DB: PDB REMARK 900 RELATED ID: 3V6H RELATED DB: PDB REMARK 900 RELATED ID: 2C2E RELATED DB: PDB REMARK 900 RELATED ID: 2BR0 RELATED DB: PDB DBREF 3V6K A 1 342 UNP Q97W02 DPO4_SULSO 1 342 DBREF 3V6K J 1 342 UNP Q97W02 DPO4_SULSO 1 342 DBREF 3V6K P 5 14 PDB 3V6K 3V6K 5 14 DBREF 3V6K B 1 14 PDB 3V6K 3V6K 1 14 DBREF 3V6K K 5 14 PDB 3V6K 3V6K 5 14 DBREF 3V6K M 1 14 PDB 3V6K 3V6K 1 14 SEQADV 3V6K HIS A -4 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS A -3 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS A -2 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS A -1 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS A 0 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS J -4 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS J -3 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS J -2 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS J -1 UNP Q97W02 EXPRESSION TAG SEQADV 3V6K HIS J 0 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 347 HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP PHE SEQRES 2 A 347 ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN PRO SEQRES 3 A 347 SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SER SEQRES 4 A 347 GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA ASN SEQRES 5 A 347 TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE PRO SEQRES 6 A 347 ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL TYR SEQRES 7 A 347 LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SER SEQRES 8 A 347 ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS ILE SEQRES 9 A 347 GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SER SEQRES 10 A 347 ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU GLY SEQRES 11 A 347 LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS ILE SEQRES 12 A 347 THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE ALA SEQRES 13 A 347 LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE LYS SEQRES 14 A 347 VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG GLU SEQRES 15 A 347 LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE THR SEQRES 16 A 347 ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU VAL SEQRES 17 A 347 ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY MET SEQRES 18 A 347 ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU ALA SEQRES 19 A 347 ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL ARG SEQRES 20 A 347 LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SER SEQRES 21 A 347 ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG ALA SEQRES 22 A 347 ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE PRO SEQRES 23 A 347 LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU ASP SEQRES 24 A 347 ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SER SEQRES 25 A 347 LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU GLN SEQRES 26 A 347 LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG ILE SEQRES 27 A 347 GLY VAL ARG PHE SER LYS PHE ILE GLU SEQRES 1 J 347 HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP PHE SEQRES 2 J 347 ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN PRO SEQRES 3 J 347 SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SER SEQRES 4 J 347 GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA ASN SEQRES 5 J 347 TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE PRO SEQRES 6 J 347 ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL TYR SEQRES 7 J 347 LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SER SEQRES 8 J 347 ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS ILE SEQRES 9 J 347 GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SER SEQRES 10 J 347 ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU GLY SEQRES 11 J 347 LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS ILE SEQRES 12 J 347 THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE ALA SEQRES 13 J 347 LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE LYS SEQRES 14 J 347 VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG GLU SEQRES 15 J 347 LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE THR SEQRES 16 J 347 ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU VAL SEQRES 17 J 347 ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY MET SEQRES 18 J 347 ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU ALA SEQRES 19 J 347 ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL ARG SEQRES 20 J 347 LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SER SEQRES 21 J 347 ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG ALA SEQRES 22 J 347 ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE PRO SEQRES 23 J 347 LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU ASP SEQRES 24 J 347 ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SER SEQRES 25 J 347 LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU GLN SEQRES 26 J 347 LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG ILE SEQRES 27 J 347 GLY VAL ARG PHE SER LYS PHE ILE GLU SEQRES 1 P 10 DG DA DA DG DG DA DT DT DC 2DT SEQRES 1 B 14 DT DC DA DC EFG DG DA DA DT DC DC DT DT SEQRES 2 B 14 DC SEQRES 1 K 10 DG DA DA DG DG DA DT DT DC 2DT SEQRES 1 M 14 DT DC DA DC EFG DG DA DA DT DC DC DT DT SEQRES 2 M 14 DC MODRES 3V6K 2DT P 14 DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE MODRES 3V6K EFG B 5 DG MODRES 3V6K 2DT K 14 DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE MODRES 3V6K EFG M 5 DG HET 2DT P 14 19 HET EFG B 5 25 HET 2DT K 14 19 HET EFG M 5 25 HET MG A 401 1 HET MG A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET NA A 406 1 HET MG J 401 1 HET CA J 402 1 HET MG J 403 1 HET CA J 404 1 HET CA J 405 1 HET CA J 406 1 HET NA J 407 1 HET NA P 101 1 HET NA B 101 1 HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM EFG 1-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D- HETNAM 2 EFG ARABINOFURANOSYL)-1H-IMIDAZO[2,1-B]PURIN-4(5H)-ONE HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE HETSYN EFG 2'-F-N2,3-ETHENO-2'-DEOXYARABINOGUANOSINE FORMUL 3 2DT 2(C10 H15 N2 O7 P) FORMUL 4 EFG 2(C12 H13 F N5 O7 P) FORMUL 7 MG 4(MG 2+) FORMUL 9 CA 7(CA 2+) FORMUL 12 NA 4(NA 1+) FORMUL 22 HOH *30(H2 O) HELIX 1 1 TYR A 10 LEU A 19 1 10 HELIX 2 2 ASN A 47 LYS A 52 1 6 HELIX 3 3 PRO A 60 LYS A 66 1 7 HELIX 4 4 ARG A 77 GLU A 94 1 18 HELIX 5 5 ASP A 117 LYS A 137 1 21 HELIX 6 6 ASN A 147 LYS A 159 1 13 HELIX 7 7 ASP A 167 LEU A 178 1 12 HELIX 8 8 ASP A 179 VAL A 183 5 5 HELIX 9 9 GLY A 187 GLY A 198 1 12 HELIX 10 10 LYS A 201 SER A 207 5 7 HELIX 11 11 PHE A 210 ASP A 231 1 22 HELIX 12 12 ASN A 257 ASP A 277 1 21 HELIX 13 13 SER A 307 LEU A 323 1 17 HELIX 14 14 TYR J 10 ASN J 20 1 11 HELIX 15 15 PRO J 21 LYS J 24 5 4 HELIX 16 16 ASN J 47 LYS J 52 1 6 HELIX 17 17 PRO J 60 LEU J 68 1 9 HELIX 18 18 ARG J 77 GLU J 94 1 18 HELIX 19 19 LEU J 124 GLU J 136 1 13 HELIX 20 20 ASN J 147 LYS J 159 1 13 HELIX 21 21 ASP J 167 LYS J 172 1 6 HELIX 22 22 ASP J 179 VAL J 183 5 5 HELIX 23 23 GLY J 187 GLY J 198 1 12 HELIX 24 24 PHE J 210 GLY J 215 1 6 HELIX 25 25 ILE J 217 ARG J 230 1 14 HELIX 26 26 ASN J 257 ASP J 277 1 21 HELIX 27 27 SER J 307 GLU J 324 1 18 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N VAL A 6 O ALA A 107 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 LYS A 164 1 O LYS A 164 N VAL A 142 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 SER A 338 -1 O ILE A 333 N VAL A 249 SHEET 3 C 4 ALA A 283 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 VAL A 296 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 4 GLU J 100 SER J 103 0 SHEET 2 D 4 GLU J 106 TYR J 108 -1 O TYR J 108 N GLU J 100 SHEET 3 D 4 VAL J 6 PHE J 8 -1 N VAL J 6 O ALA J 107 SHEET 4 D 4 VAL J 140 VAL J 142 -1 O THR J 141 N ASP J 7 SHEET 1 E 3 ALA J 42 ALA J 46 0 SHEET 2 E 3 VAL J 28 VAL J 32 -1 N VAL J 30 O ALA J 44 SHEET 3 E 3 VAL J 72 PRO J 75 1 O LEU J 74 N VAL J 29 SHEET 1 F 4 SER J 244 SER J 255 0 SHEET 2 F 4 ILE J 330 PHE J 340 -1 O ILE J 333 N VAL J 249 SHEET 3 F 4 PRO J 281 THR J 290 -1 N HIS J 285 O ARG J 336 SHEET 4 F 4 ILE J 295 THR J 301 -1 O VAL J 296 N ALA J 288 LINK O3' DC P 13 P 2DT P 14 1555 1555 1.55 LINK O3' DC B 4 P EFG B 5 1555 1555 1.57 LINK O3' DC K 13 P 2DT K 14 1555 1555 1.60 LINK O3' DC M 4 P EFG M 5 1555 1555 1.59 LINK OD2 ASP A 7 MG MG A 401 1555 1555 2.48 LINK OD2 ASP A 105 MG MG A 401 1555 1555 2.75 LINK O ALA A 181 CA CA A 403 1555 1555 2.30 LINK O ILE A 186 CA CA A 403 1555 1555 2.77 LINK OD1 ASP J 7 MG MG J 401 1555 1555 2.59 LINK OD2 ASP J 7 MG MG J 403 1555 1555 2.79 LINK O PHE J 8 MG MG J 403 1555 1555 2.70 LINK OD2 ASP J 105 MG MG J 403 1555 1555 2.26 LINK O ALA J 181 CA CA J 402 1555 1555 2.80 LINK O ILE J 186 CA CA J 402 1555 1555 2.52 LINK OD1 ASP J 294 CA CA J 404 1555 1555 2.72 LINK OD2 ASP J 294 CA CA J 404 1555 1555 2.99 LINK MG MG J 401 OP2 2DT K 14 1555 1555 2.83 LINK MG MG J 403 O HOH J 502 1555 1555 2.65 LINK CA CA J 404 OP2 DA K 10 1555 1555 2.43 CISPEP 1 LYS A 159 PRO A 160 0 0.21 CISPEP 2 LYS J 159 PRO J 160 0 0.50 CISPEP 3 ASP J 204 THR J 205 0 -0.25 SITE 1 AC1 3 ASP A 7 ASP A 105 MG A 402 SITE 1 AC2 5 PHE A 8 TYR A 10 ASP A 105 LYS A 159 SITE 2 AC2 5 MG A 401 SITE 1 AC3 2 ALA A 181 ILE A 186 SITE 1 AC4 1 ASN A 234 SITE 1 AC5 5 ASP J 7 ASP J 105 GLU J 106 MG J 403 SITE 2 AC5 5 2DT K 14 SITE 1 AC6 3 ALA J 181 ILE J 186 DC K 13 SITE 1 AC7 5 ASP J 7 PHE J 8 ASP J 105 MG J 401 SITE 2 AC7 5 HOH J 502 SITE 1 AC8 3 ASP J 294 DG K 9 DA K 10 SITE 1 AC9 2 SER J 103 ILE J 104 SITE 1 BC1 1 DG P 5 CRYST1 51.855 110.953 100.238 90.00 102.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019285 0.000000 0.004346 0.00000 SCALE2 0.000000 0.009013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010226 0.00000