PDB Short entry for 3VF0 HEADER CELL ADHESION/PROTEIN BINDING 09-JAN-12 3VF0 TITLE RAVER1 IN COMPLEX WITH METAVINCULIN L954 DELETION MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: VINCULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAVINCULIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RIBONUCLEOPROTEIN PTB-BINDING 1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROTEIN RAVER-1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: KIAA1978, RAVER1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS CYTOSKELETAL F-ACTIN BINDING PROTEIN, RIBONUCLEOPROTEIN, CELL KEYWDS 2 ADHESION-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.H.LEE,C.VONRHEIN,G.BRICOGNE,T.IZARD REVDAT 2 19-SEP-12 3VF0 1 JRNL REVDAT 1 25-JUL-12 3VF0 0 JRNL AUTH J.H.LEE,E.S.RANGARAJAN,C.VONRHEIN,G.BRICOGNE,T.IZARD JRNL TITL THE METAVINCULIN TAIL DOMAIN DIRECTS CONSTITUTIVE JRNL TITL 2 INTERACTIONS WITH RAVER1 AND VINCULIN RNA. JRNL REF J.MOL.BIOL. V. 422 697 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22709580 JRNL DOI 10.1016/J.JMB.2012.06.015 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1390 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2855 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1805 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2703 REMARK 3 BIN R VALUE (WORKING SET) : 0.1774 REMARK 3 BIN FREE R VALUE : 0.2367 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.32 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 152 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.09740 REMARK 3 B22 (A**2) : -2.09740 REMARK 3 B33 (A**2) : 4.19480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.25 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3739 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5030 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1798 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 96 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 533 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3739 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 487 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 6 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 2 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4435 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.12 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 956 A 1133 REMARK 3 ORIGIN FOR THE GROUP (A): 55.1522 50.4110 -4.6739 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: -0.1075 REMARK 3 T33: -0.1119 T12: 0.0552 REMARK 3 T13: -0.0262 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.1979 L22: 1.0363 REMARK 3 L33: 1.0838 L12: -0.1652 REMARK 3 L13: -0.6391 L23: -0.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.1049 S13: -0.0524 REMARK 3 S21: -0.0156 S22: -0.0652 S23: -0.0727 REMARK 3 S31: 0.1284 S32: 0.0125 S33: 0.0676 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 37 B 319 REMARK 3 ORIGIN FOR THE GROUP (A): 62.9936 83.9507 -39.2555 REMARK 3 T TENSOR REMARK 3 T11: -0.0817 T22: -0.0183 REMARK 3 T33: -0.0440 T12: -0.0242 REMARK 3 T13: -0.0210 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1028 L22: 0.7794 REMARK 3 L33: 1.3101 L12: -0.0865 REMARK 3 L13: 0.0248 L23: -0.3895 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.0240 S13: -0.0742 REMARK 3 S21: 0.0779 S22: 0.0110 S23: -0.0153 REMARK 3 S31: -0.1585 S32: 0.2344 S33: -0.0073 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB069962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 35.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.39600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.19800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.29700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.09900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.49500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.39600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 34.19800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 17.09900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.29700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 85.49500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS A HETERODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 82.45250 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 142.81192 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -51.29700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 851 REMARK 465 SER A 852 REMARK 465 HIS A 853 REMARK 465 MET A 854 REMARK 465 ASP A 855 REMARK 465 GLU A 856 REMARK 465 LEU A 857 REMARK 465 ALA A 858 REMARK 465 PRO A 859 REMARK 465 PRO A 860 REMARK 465 LYS A 861 REMARK 465 PRO A 862 REMARK 465 PRO A 863 REMARK 465 LEU A 864 REMARK 465 PRO A 865 REMARK 465 GLU A 866 REMARK 465 GLY A 867 REMARK 465 GLU A 868 REMARK 465 VAL A 869 REMARK 465 PRO A 870 REMARK 465 PRO A 871 REMARK 465 PRO A 872 REMARK 465 ARG A 873 REMARK 465 PRO A 874 REMARK 465 PRO A 875 REMARK 465 PRO A 876 REMARK 465 PRO A 877 REMARK 465 GLU A 878 REMARK 465 GLU A 879 REMARK 465 LYS A 880 REMARK 465 ASP A 881 REMARK 465 GLU A 882 REMARK 465 GLU A 883 REMARK 465 PHE A 884 REMARK 465 PRO A 885 REMARK 465 GLU A 886 REMARK 465 GLN A 887 REMARK 465 LYS A 888 REMARK 465 ALA A 889 REMARK 465 GLY A 890 REMARK 465 GLU A 891 REMARK 465 VAL A 892 REMARK 465 ILE A 893 REMARK 465 ASN A 894 REMARK 465 GLN A 895 REMARK 465 PRO A 896 REMARK 465 MET A 897 REMARK 465 MET A 898 REMARK 465 MET A 899 REMARK 465 ALA A 900 REMARK 465 ALA A 901 REMARK 465 ARG A 902 REMARK 465 GLN A 903 REMARK 465 LEU A 904 REMARK 465 HIS A 905 REMARK 465 ASP A 906 REMARK 465 GLU A 907 REMARK 465 ALA A 908 REMARK 465 ARG A 909 REMARK 465 LYS A 910 REMARK 465 TRP A 911 REMARK 465 SER A 912 REMARK 465 SER A 913 REMARK 465 LYS A 914 REMARK 465 PRO A 915 REMARK 465 GLY A 916 REMARK 465 ILE A 917 REMARK 465 PRO A 918 REMARK 465 ALA A 919 REMARK 465 ALA A 920 REMARK 465 GLU A 921 REMARK 465 VAL A 922 REMARK 465 GLY A 923 REMARK 465 ILE A 924 REMARK 465 GLY A 925 REMARK 465 VAL A 926 REMARK 465 VAL A 927 REMARK 465 ALA A 928 REMARK 465 GLU A 929 REMARK 465 ALA A 930 REMARK 465 ASP A 931 REMARK 465 ALA A 932 REMARK 465 ALA A 933 REMARK 465 ASP A 934 REMARK 465 ALA A 935 REMARK 465 ALA A 936 REMARK 465 GLY A 937 REMARK 465 PHE A 938 REMARK 465 PRO A 939 REMARK 465 VAL A 940 REMARK 465 PRO A 941 REMARK 465 PRO A 942 REMARK 465 ASP A 943 REMARK 465 MET A 944 REMARK 465 GLU A 945 REMARK 465 ASP A 946 REMARK 465 ASP A 947 REMARK 465 TYR A 948 REMARK 465 GLU A 949 REMARK 465 PRO A 950 REMARK 465 GLU A 951 REMARK 465 LEU A 952 REMARK 465 LEU A 953 REMARK 465 LEU A 954 REMARK 465 MET A 955 REMARK 465 ARG B 320 REMARK 465 GLY B 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1076 -2.79 -143.06 REMARK 500 ASN B 233 40.44 -144.88 REMARK 500 CYS B 251 100.91 -160.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3011 DBREF 3VF0 A 855 1133 UNP P18206 VINC_HUMAN 856 1134 DBREF 3VF0 B 39 321 UNP Q8IY67 RAVR1_HUMAN 39 321 SEQADV 3VF0 GLY A 851 UNP P18206 CLONING ARTIFACT SEQADV 3VF0 SER A 852 UNP P18206 CLONING ARTIFACT SEQADV 3VF0 HIS A 853 UNP P18206 CLONING ARTIFACT SEQADV 3VF0 MET A 854 UNP P18206 CLONING ARTIFACT SEQADV 3VF0 HIS B 37 UNP Q8IY67 CLONING ARTIFACT SEQADV 3VF0 MET B 38 UNP Q8IY67 CLONING ARTIFACT SEQRES 1 A 283 GLY SER HIS MET ASP GLU LEU ALA PRO PRO LYS PRO PRO SEQRES 2 A 283 LEU PRO GLU GLY GLU VAL PRO PRO PRO ARG PRO PRO PRO SEQRES 3 A 283 PRO GLU GLU LYS ASP GLU GLU PHE PRO GLU GLN LYS ALA SEQRES 4 A 283 GLY GLU VAL ILE ASN GLN PRO MET MET MET ALA ALA ARG SEQRES 5 A 283 GLN LEU HIS ASP GLU ALA ARG LYS TRP SER SER LYS PRO SEQRES 6 A 283 GLY ILE PRO ALA ALA GLU VAL GLY ILE GLY VAL VAL ALA SEQRES 7 A 283 GLU ALA ASP ALA ALA ASP ALA ALA GLY PHE PRO VAL PRO SEQRES 8 A 283 PRO ASP MET GLU ASP ASP TYR GLU PRO GLU LEU LEU LEU SEQRES 9 A 283 MET PRO SER ASN GLN PRO VAL ASN GLN PRO ILE LEU ALA SEQRES 10 A 283 ALA ALA GLN SER LEU HIS ARG GLU ALA THR LYS TRP SER SEQRES 11 A 283 SER LYS GLY ASN ASP ILE ILE ALA ALA ALA LYS ARG MET SEQRES 12 A 283 ALA LEU LEU MET ALA GLU MET SER ARG LEU VAL ARG GLY SEQRES 13 A 283 GLY SER GLY THR LYS ARG ALA LEU ILE GLN CYS ALA LYS SEQRES 14 A 283 ASP ILE ALA LYS ALA SER ASP GLU VAL THR ARG LEU ALA SEQRES 15 A 283 LYS GLU VAL ALA LYS GLN CYS THR ASP LYS ARG ILE ARG SEQRES 16 A 283 THR ASN LEU LEU GLN VAL CYS GLU ARG ILE PRO THR ILE SEQRES 17 A 283 SER THR GLN LEU LYS ILE LEU SER THR VAL LYS ALA THR SEQRES 18 A 283 MET LEU GLY ARG THR ASN ILE SER ASP GLU GLU SER GLU SEQRES 19 A 283 GLN ALA THR GLU MET LEU VAL HIS ASN ALA GLN ASN LEU SEQRES 20 A 283 MET GLN SER VAL LYS GLU THR VAL ARG GLU ALA GLU ALA SEQRES 21 A 283 ALA SER ILE LYS ILE ARG THR ASP ALA GLY PHE THR LEU SEQRES 22 A 283 ARG TRP VAL ARG LYS THR PRO TRP TYR GLN SEQRES 1 B 285 HIS MET LEU ASP PRO GLU GLU ILE ARG LYS ARG LEU GLU SEQRES 2 B 285 HIS THR GLU ARG GLN PHE ARG ASN ARG ARG LYS ILE LEU SEQRES 3 B 285 ILE ARG GLY LEU PRO GLY ASP VAL THR ASN GLN GLU VAL SEQRES 4 B 285 HIS ASP LEU LEU SER ASP TYR GLU LEU LYS TYR CYS PHE SEQRES 5 B 285 VAL ASP LYS TYR LYS GLY THR ALA PHE VAL THR LEU LEU SEQRES 6 B 285 ASN GLY GLU GLN ALA GLU ALA ALA ILE ASN ALA PHE HIS SEQRES 7 B 285 GLN SER ARG LEU ARG GLU ARG GLU LEU SER VAL GLN LEU SEQRES 8 B 285 GLN PRO THR ASP ALA LEU LEU CYS VAL ALA ASN LEU PRO SEQRES 9 B 285 PRO SER LEU THR GLN GLN GLN PHE GLU GLU LEU VAL ARG SEQRES 10 B 285 PRO PHE GLY SER LEU GLU ARG CYS PHE LEU VAL TYR SER SEQRES 11 B 285 GLU ARG THR GLY GLN SER LYS GLY TYR GLY PHE ALA GLU SEQRES 12 B 285 TYR MET LYS LYS ASP SER ALA ALA ARG ALA LYS SER ASP SEQRES 13 B 285 LEU LEU GLY LYS PRO LEU GLY PRO ARG THR LEU TYR VAL SEQRES 14 B 285 HIS TRP THR ASP ALA GLY GLN LEU THR PRO ALA LEU LEU SEQRES 15 B 285 HIS SER ARG CYS LEU CYS VAL ASP ARG LEU PRO PRO GLY SEQRES 16 B 285 PHE ASN ASP VAL ASP ALA LEU CYS ARG ALA LEU SER ALA SEQRES 17 B 285 VAL HIS SER PRO THR PHE CYS GLN LEU ALA CYS GLY GLN SEQRES 18 B 285 ASP GLY GLN LEU LYS GLY PHE ALA VAL LEU GLU TYR GLU SEQRES 19 B 285 THR ALA GLU MET ALA GLU GLU ALA GLN GLN GLN ALA ASP SEQRES 20 B 285 GLY LEU SER LEU GLY GLY SER HIS LEU ARG VAL SER PHE SEQRES 21 B 285 CYS ALA PRO GLY PRO PRO GLY ARG SER MET LEU ALA ALA SEQRES 22 B 285 LEU ILE ALA ALA GLN ALA THR ALA LEU ASN ARG GLY HET EPE A2001 15 HET GOL A2002 6 HET GOL A2003 6 HET GOL B3001 6 HET GOL B3002 6 HET GOL B3003 6 HET GOL B3004 6 HET GOL B3005 6 HET GOL B3006 6 HET GOL B3007 6 HET GOL B3008 6 HET GOL B3009 6 HET GOL B3010 6 HET GOL B3011 6 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 GOL 13(C3 H8 O3) FORMUL 17 HOH *254(H2 O) HELIX 1 1 ASN A 962 LYS A 978 1 17 HELIX 2 2 ASN A 984 VAL A 1004 1 21 HELIX 3 3 GLY A 1009 LYS A 1037 1 29 HELIX 4 4 ASP A 1041 ARG A 1054 1 14 HELIX 5 5 ARG A 1054 GLY A 1074 1 21 HELIX 6 6 SER A 1079 SER A 1112 1 34 HELIX 7 7 ASP B 40 ARG B 56 1 17 HELIX 8 8 THR B 71 LEU B 79 1 9 HELIX 9 9 ASN B 102 HIS B 114 1 13 HELIX 10 10 THR B 144 ARG B 153 1 10 HELIX 11 11 PRO B 154 GLY B 156 5 3 HELIX 12 12 LYS B 182 LEU B 194 1 13 HELIX 13 13 ASP B 209 LEU B 213 5 5 HELIX 14 14 PRO B 215 HIS B 219 5 5 HELIX 15 15 ASP B 234 LEU B 242 1 9 HELIX 16 16 THR B 271 ASP B 283 1 13 HELIX 17 17 PRO B 302 ASN B 319 1 18 SHEET 1 A 4 LEU B 84 ASP B 90 0 SHEET 2 A 4 THR B 95 LEU B 100 -1 O THR B 95 N ASP B 90 SHEET 3 A 4 LYS B 60 ARG B 64 -1 N ILE B 61 O VAL B 98 SHEET 4 A 4 SER B 124 LEU B 127 -1 O GLN B 126 N LEU B 62 SHEET 1 B 2 ARG B 117 LEU B 118 0 SHEET 2 B 2 ARG B 121 GLU B 122 -1 O ARG B 121 N LEU B 118 SHEET 1 C 4 LEU B 158 TYR B 165 0 SHEET 2 C 4 SER B 172 TYR B 180 -1 O GLU B 179 N GLU B 159 SHEET 3 C 4 LEU B 133 ALA B 137 -1 N LEU B 134 O ALA B 178 SHEET 4 C 4 TYR B 204 TRP B 207 -1 O TYR B 204 N ALA B 137 SHEET 1 D 2 PRO B 197 LEU B 198 0 SHEET 2 D 2 ARG B 201 THR B 202 -1 O ARG B 201 N LEU B 198 SHEET 1 E 4 PHE B 250 CYS B 255 0 SHEET 2 E 4 LEU B 261 GLU B 268 -1 O PHE B 264 N ALA B 254 SHEET 3 E 4 CYS B 222 ASP B 226 -1 N VAL B 225 O ALA B 265 SHEET 4 E 4 ARG B 293 PHE B 296 -1 O SER B 295 N CYS B 224 SHEET 1 F 2 SER B 286 LEU B 287 0 SHEET 2 F 2 SER B 290 HIS B 291 -1 O SER B 290 N LEU B 287 SSBOND 1 CYS B 239 CYS B 251 1555 1555 2.05 SITE 1 AC1 5 PRO A1130 TYR A1132 GLN A1133 LYS B 262 SITE 2 AC1 5 LEU B 318 SITE 1 AC2 5 SER A 980 SER A 981 LYS A 991 LYS A1128 SITE 2 AC2 5 HOH A2189 SITE 1 AC3 3 ASP A1026 THR A1029 LYS A1033 SITE 1 AC4 7 PRO B 141 SER B 172 GLN B 279 PHE B 296 SITE 2 AC4 7 HOH B3134 HOH B3211 HOH B3220 SITE 1 AC5 7 PRO B 140 PRO B 141 SER B 142 PRO B 200 SITE 2 AC5 7 ARG B 201 HOH B3129 HOH B3253 SITE 1 AC6 4 TYR B 86 THR B 99 MET B 181 HOH B3128 SITE 1 AC7 5 ARG B 53 ASN B 57 ASN B 102 GLY B 103 SITE 2 AC7 5 GLU B 104 SITE 1 AC8 5 GLN B 54 LEU B 158 CYS B 161 HOH B3216 SITE 2 AC8 5 HOH B3237 SITE 1 AC9 4 THR B 71 ASN B 72 GLN B 73 LYS B 91 SITE 1 BC1 5 GLU B 167 HIS B 219 ALA B 272 GLU B 276 SITE 2 BC1 5 HOH B3191 SITE 1 BC2 5 SER A1008 GLU B 122 LEU B 123 SER B 124 SITE 2 BC2 5 HOH B3245 SITE 1 BC3 8 TYR A1132 ASN B 138 THR B 202 TYR B 204 SITE 2 BC3 8 CYS B 224 LEU B 310 HOH B3207 HOH B3241 SITE 1 BC4 2 THR B 214 LEU B 217 SITE 1 BC5 7 GLU B 43 LYS B 46 ARG B 47 HIS B 50 SITE 2 BC5 7 GLN B 145 TYR B 165 HOH B3145 CRYST1 164.905 164.905 102.594 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006064 0.003501 0.000000 0.00000 SCALE2 0.000000 0.007002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009747 0.00000