PDB Short entry for 3VTW HEADER PROTEIN BINDING 08-JUN-12 3VTW TITLE CRYSTAL STRUCTURE OF T7-TAGGED OPTINEURIN LIR-FUSED HUMAN LC3B_2-119 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPTINEURIN, MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT COMPND 3 CHAIN 3B; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: UNP RESIDUES 170-181, RESIDUES 2-119; COMPND 6 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B, AUTOPHAGY-RELATED COMPND 7 UBIQUITIN-LIKE MODIFIER LC3 B, MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2, COMPND 8 MAP1A/MAP1B LIGHT CHAIN 3 B, MAP1A/MAP1B LC3 B, MICROTUBULE- COMPND 9 ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 BETA; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 OTHER_DETAILS: THE FUSION PROTEIN OF OPTINEURIN LIR (RESIDUES 170- COMPND 13 181) AND MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B COMPND 14 (RESIDUES 2-119) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP1LC3B, MAP1ALC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS UBIQUITIN-LIKE FOLD, AUTOPHAGY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR H.SUZUKI,M.KAWASAKI,R.KATO,S.WAKATSUKI REVDAT 4 08-NOV-23 3VTW 1 REMARK SEQADV REVDAT 3 23-AUG-17 3VTW 1 SOURCE REMARK REVDAT 2 25-DEC-13 3VTW 1 JRNL REVDAT 1 26-JUN-13 3VTW 0 JRNL AUTH V.V.ROGOV,H.SUZUKI,E.FISKIN,P.WILD,A.KNISS,A.ROZENKNOP, JRNL AUTH 2 R.KATO,M.KAWASAKI,D.G.MCEWAN,F.LOHR,P.GUNTERT,I.DIKIC, JRNL AUTH 3 S.WAKATSUKI,V.DOTSCH JRNL TITL STRUCTURAL BASIS FOR PHOSPHORYLATION-TRIGGERED AUTOPHAGIC JRNL TITL 2 CLEARANCE OF SALMONELLA JRNL REF BIOCHEM.J. V. 454 459 2013 JRNL REFN ISSN 0264-6021 JRNL PMID 23805866 JRNL DOI 10.1042/BJ20121907 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 18984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1354 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3102 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -2.71000 REMARK 3 B33 (A**2) : 3.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.395 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.298 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.796 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3178 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4281 ; 1.900 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 7.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;36.435 ;23.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 606 ;20.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;21.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2373 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1875 ; 0.965 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3072 ; 1.843 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1303 ; 2.629 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 4.510 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5019 -21.5189 -0.6851 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.1199 REMARK 3 T33: 0.1247 T12: 0.0067 REMARK 3 T13: -0.0056 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.2401 L22: 0.8822 REMARK 3 L33: 0.6279 L12: -0.5873 REMARK 3 L13: -0.4909 L23: -0.2289 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.0834 S13: -0.0481 REMARK 3 S21: 0.0139 S22: 0.0722 S23: 0.0168 REMARK 3 S31: -0.0602 S32: -0.0093 S33: -0.0150 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 134 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1363 -49.8691 -3.7683 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.1087 REMARK 3 T33: 0.1505 T12: 0.0088 REMARK 3 T13: -0.0024 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.4950 L22: 1.1539 REMARK 3 L33: 0.3387 L12: 0.8741 REMARK 3 L13: -0.6036 L23: -0.1137 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: 0.0245 S13: -0.0317 REMARK 3 S21: 0.0082 S22: -0.0326 S23: 0.0381 REMARK 3 S31: -0.0007 S32: -0.0034 S33: 0.0372 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 134 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7328 -15.0338 -35.5883 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.1080 REMARK 3 T33: 0.0164 T12: 0.0294 REMARK 3 T13: -0.0095 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.1001 L22: 2.7290 REMARK 3 L33: 1.4125 L12: 0.4105 REMARK 3 L13: -0.2957 L23: -1.0793 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: 0.0141 S13: -0.0128 REMARK 3 S21: -0.0451 S22: 0.0848 S23: -0.1447 REMARK 3 S31: 0.0526 S32: -0.0475 S33: 0.0042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000095494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20055 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 49.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3VTU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.05M TRI REMARK 280 -SODIUM CITRATE, 0.1M POTASSIUM SODIUM TARTRATE, 5% GLYCEROL, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.58500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 MET A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 MET A -8 REMARK 465 THR A -7 REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 GLN A -4 REMARK 465 GLN A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 ASP A 9 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 MET B -11 REMARK 465 ALA B -10 REMARK 465 SER B -9 REMARK 465 MET B -8 REMARK 465 THR B -7 REMARK 465 GLY B -6 REMARK 465 GLY B -5 REMARK 465 GLN B -4 REMARK 465 GLN B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 8 REMARK 465 ASP B 9 REMARK 465 GLY C -14 REMARK 465 SER C -13 REMARK 465 HIS C -12 REMARK 465 MET C -11 REMARK 465 ALA C -10 REMARK 465 SER C -9 REMARK 465 MET C -8 REMARK 465 THR C -7 REMARK 465 GLY C -6 REMARK 465 GLY C -5 REMARK 465 GLN C -4 REMARK 465 GLN C -3 REMARK 465 MET C -2 REMARK 465 GLY C -1 REMARK 465 ARG C 0 REMARK 465 GLY C 1 REMARK 465 SER C 2 REMARK 465 GLU C 3 REMARK 465 GLU C 4 REMARK 465 GLY C 5 REMARK 465 GLU C 6 REMARK 465 GLU C 7 REMARK 465 GLU C 8 REMARK 465 ASP C 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 49.25 37.79 REMARK 500 VAL B 104 52.43 -149.93 REMARK 500 SER B 105 46.66 -107.62 REMARK 500 VAL B 106 143.20 -14.69 REMARK 500 SER B 107 -36.90 87.81 REMARK 500 HIS C 42 77.05 -150.20 REMARK 500 GLN C 58 -63.47 -103.18 REMARK 500 ASN C 99 19.71 43.32 REMARK 500 MET C 103 -92.23 -110.68 REMARK 500 VAL C 104 -121.79 35.77 REMARK 500 SER C 105 88.70 -67.83 REMARK 500 SER C 107 -7.40 64.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VTU RELATED DB: PDB REMARK 900 RELATED ID: 3VTV RELATED DB: PDB DBREF 3VTW A 3 14 UNP Q96CV9 OPTN_HUMAN 170 181 DBREF 3VTW A 17 134 UNP Q9GZQ8 MLP3B_HUMAN 2 119 DBREF 3VTW B 3 14 UNP Q96CV9 OPTN_HUMAN 170 181 DBREF 3VTW B 17 134 UNP Q9GZQ8 MLP3B_HUMAN 2 119 DBREF 3VTW C 3 14 UNP Q96CV9 OPTN_HUMAN 170 181 DBREF 3VTW C 17 134 UNP Q9GZQ8 MLP3B_HUMAN 2 119 SEQADV 3VTW GLY A -14 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER A -13 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW HIS A -12 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET A -11 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW ALA A -10 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER A -9 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET A -8 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW THR A -7 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY A -6 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY A -5 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLN A -4 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLN A -3 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET A -2 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY A -1 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW ARG A 0 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY A 1 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER A 2 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLU A 3 UNP Q96CV9 SER 170 ENGINEERED MUTATION SEQADV 3VTW GLU A 4 UNP Q96CV9 SER 171 ENGINEERED MUTATION SEQADV 3VTW GLU A 6 UNP Q96CV9 SER 173 ENGINEERED MUTATION SEQADV 3VTW GLU A 7 UNP Q96CV9 SER 174 ENGINEERED MUTATION SEQADV 3VTW GLU A 10 UNP Q96CV9 SER 177 ENGINEERED MUTATION SEQADV 3VTW GLY A 15 UNP Q96CV9 LINKER SEQADV 3VTW GLY A 16 UNP Q96CV9 LINKER SEQADV 3VTW GLY B -14 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER B -13 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW HIS B -12 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET B -11 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW ALA B -10 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER B -9 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET B -8 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW THR B -7 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY B -6 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY B -5 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLN B -4 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLN B -3 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET B -2 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY B -1 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW ARG B 0 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY B 1 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER B 2 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLU B 3 UNP Q96CV9 SER 170 ENGINEERED MUTATION SEQADV 3VTW GLU B 4 UNP Q96CV9 SER 171 ENGINEERED MUTATION SEQADV 3VTW GLU B 6 UNP Q96CV9 SER 173 ENGINEERED MUTATION SEQADV 3VTW GLU B 7 UNP Q96CV9 SER 174 ENGINEERED MUTATION SEQADV 3VTW GLU B 10 UNP Q96CV9 SER 177 ENGINEERED MUTATION SEQADV 3VTW GLY B 15 UNP Q96CV9 LINKER SEQADV 3VTW GLY B 16 UNP Q96CV9 LINKER SEQADV 3VTW GLY C -14 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER C -13 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW HIS C -12 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET C -11 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW ALA C -10 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER C -9 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET C -8 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW THR C -7 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY C -6 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY C -5 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLN C -4 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLN C -3 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW MET C -2 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY C -1 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW ARG C 0 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLY C 1 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW SER C 2 UNP Q96CV9 EXPRESSION TAG SEQADV 3VTW GLU C 3 UNP Q96CV9 SER 170 ENGINEERED MUTATION SEQADV 3VTW GLU C 4 UNP Q96CV9 SER 171 ENGINEERED MUTATION SEQADV 3VTW GLU C 6 UNP Q96CV9 SER 173 ENGINEERED MUTATION SEQADV 3VTW GLU C 7 UNP Q96CV9 SER 174 ENGINEERED MUTATION SEQADV 3VTW GLU C 10 UNP Q96CV9 SER 177 ENGINEERED MUTATION SEQADV 3VTW GLY C 15 UNP Q96CV9 LINKER SEQADV 3VTW GLY C 16 UNP Q96CV9 LINKER SEQRES 1 A 149 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 149 GLY ARG GLY SER GLU GLU GLY GLU GLU GLU ASP GLU PHE SEQRES 3 A 149 VAL GLU ILE GLY GLY PRO SER GLU LYS THR PHE LYS GLN SEQRES 4 A 149 ARG ARG THR PHE GLU GLN ARG VAL GLU ASP VAL ARG LEU SEQRES 5 A 149 ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL ILE ILE SEQRES 6 A 149 GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU ASP SEQRES 7 A 149 LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SER SEQRES 8 A 149 GLU LEU ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU ASN SEQRES 9 A 149 ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SER SEQRES 10 A 149 MET VAL SER VAL SER THR PRO ILE SER GLU VAL TYR GLU SEQRES 11 A 149 SER GLU LYS ASP GLU ASP GLY PHE LEU TYR MET VAL TYR SEQRES 12 A 149 ALA SER GLN GLU THR PHE SEQRES 1 B 149 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 B 149 GLY ARG GLY SER GLU GLU GLY GLU GLU GLU ASP GLU PHE SEQRES 3 B 149 VAL GLU ILE GLY GLY PRO SER GLU LYS THR PHE LYS GLN SEQRES 4 B 149 ARG ARG THR PHE GLU GLN ARG VAL GLU ASP VAL ARG LEU SEQRES 5 B 149 ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL ILE ILE SEQRES 6 B 149 GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU ASP SEQRES 7 B 149 LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SER SEQRES 8 B 149 GLU LEU ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU ASN SEQRES 9 B 149 ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SER SEQRES 10 B 149 MET VAL SER VAL SER THR PRO ILE SER GLU VAL TYR GLU SEQRES 11 B 149 SER GLU LYS ASP GLU ASP GLY PHE LEU TYR MET VAL TYR SEQRES 12 B 149 ALA SER GLN GLU THR PHE SEQRES 1 C 149 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 C 149 GLY ARG GLY SER GLU GLU GLY GLU GLU GLU ASP GLU PHE SEQRES 3 C 149 VAL GLU ILE GLY GLY PRO SER GLU LYS THR PHE LYS GLN SEQRES 4 C 149 ARG ARG THR PHE GLU GLN ARG VAL GLU ASP VAL ARG LEU SEQRES 5 C 149 ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL ILE ILE SEQRES 6 C 149 GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU ASP SEQRES 7 C 149 LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SER SEQRES 8 C 149 GLU LEU ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU ASN SEQRES 9 C 149 ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SER SEQRES 10 C 149 MET VAL SER VAL SER THR PRO ILE SER GLU VAL TYR GLU SEQRES 11 C 149 SER GLU LYS ASP GLU ASP GLY PHE LEU TYR MET VAL TYR SEQRES 12 C 149 ALA SER GLN GLU THR PHE HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 C 201 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *85(H2 O) HELIX 1 1 THR A 21 ARG A 26 1 6 HELIX 2 2 THR A 27 HIS A 42 1 16 HELIX 3 3 ASN A 74 LEU A 86 1 13 HELIX 4 4 PRO A 109 LYS A 118 1 10 HELIX 5 5 THR B 21 ARG B 26 1 6 HELIX 6 6 THR B 27 HIS B 42 1 16 HELIX 7 7 ASN B 74 GLN B 87 1 14 HELIX 8 8 PRO B 109 LYS B 118 1 10 HELIX 9 9 THR C 21 ARG C 26 1 6 HELIX 10 10 THR C 27 HIS C 42 1 16 HELIX 11 11 ASN C 74 LEU C 86 1 13 HELIX 12 12 PRO C 109 LYS C 118 1 10 SHEET 1 A 5 LYS A 66 PRO A 70 0 SHEET 2 A 5 LYS A 45 ARG A 52 -1 N ILE A 46 O VAL A 69 SHEET 3 A 5 LEU A 124 ALA A 129 1 O MET A 126 N GLU A 51 SHEET 4 A 5 PHE A 95 VAL A 98 -1 N LEU A 97 O VAL A 127 SHEET 5 A 5 HIS A 101 SER A 102 -1 O HIS A 101 N VAL A 98 SHEET 1 B 5 LYS B 66 PRO B 70 0 SHEET 2 B 5 LYS B 45 ARG B 52 -1 N ILE B 46 O VAL B 69 SHEET 3 B 5 LEU B 124 ALA B 129 1 O LEU B 124 N ILE B 49 SHEET 4 B 5 PHE B 95 VAL B 98 -1 N LEU B 97 O VAL B 127 SHEET 5 B 5 HIS B 101 SER B 102 -1 O HIS B 101 N VAL B 98 SHEET 1 C 4 LYS C 66 PRO C 70 0 SHEET 2 C 4 LYS C 45 ARG C 52 -1 N ILE C 46 O VAL C 69 SHEET 3 C 4 LEU C 124 ALA C 129 1 O LEU C 124 N ILE C 49 SHEET 4 C 4 PHE C 95 VAL C 98 -1 N LEU C 97 O VAL C 127 SITE 1 AC1 4 LYS A 23 PHE A 28 ARG A 31 ARG B 84 SITE 1 AC2 4 VAL B 12 LYS B 64 ARG B 85 HOH B 327 SITE 1 AC3 2 LYS A 54 ARG B 39 SITE 1 AC4 2 PRO C 17 SER C 18 CRYST1 61.170 64.120 149.770 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006677 0.00000