PDB Short entry for 3VVW HEADER PROTEIN TRANSPORT 28-JUL-12 3VVW TITLE NDP52 IN COMPLEX WITH LC3C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN COMPND 3 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 21-141; COMPND 6 SYNONYM: ANTIGEN NUCLEAR DOT 52 KDA PROTEIN, NUCLEAR DOMAIN 10 COMPND 7 PROTEIN NDP52, NUCLEAR DOMAIN 10 PROTEIN 52, NUCLEAR DOT PROTEIN 52; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3C; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 1-126; COMPND 13 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 C, AUTOPHAGY-RELATED COMPND 14 UBIQUITIN-LIKE MODIFIER LC3 C, MAP1 LIGHT CHAIN 3-LIKE PROTEIN 3, COMPND 15 MAP1A/MAP1B LIGHT CHAIN 3 C, MAP1A/MAP1B LC3 C, MICROTUBULE- COMPND 16 ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 GAMMA; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALCOCO2, NDP52; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MAP1LC3C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY ADAPTOR PROTEIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.AKUTSU,N.V.MUHLINEN,F.RANDOW,D.KOMANDER REVDAT 3 20-MAR-24 3VVW 1 SEQADV REVDAT 2 13-JUN-18 3VVW 1 REMARK REVDAT 1 27-FEB-13 3VVW 0 JRNL AUTH N.V.MUHLINEN,M.AKUTSU,B.J.RAVENHILL,A.FOEGLEIN,S.BLOOR, JRNL AUTH 2 T.J.RUTHERFORD,S.M.FREUND,D.KOMANDER,F.RANDOW JRNL TITL LC3C, BOUND SELECTIVELY BY A NONCANONICAL LIR MOTIF IN JRNL TITL 2 NDP52, IS REQUIRED FOR ANTIBACTERIAL AUTOPHAGY JRNL REF MOL.CELL V. 48 329 2012 JRNL REFN ISSN 1097-2765 JRNL PMID 23022382 JRNL DOI 10.1016/J.MOLCEL.2012.08.024 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_723 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1520 - 3.6052 0.99 3344 169 0.1887 0.2107 REMARK 3 2 3.6052 - 2.8618 1.00 3251 154 0.2118 0.2711 REMARK 3 3 2.8618 - 2.5000 1.00 3220 164 0.2701 0.3484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 32.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.730 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.44550 REMARK 3 B22 (A**2) : 11.05540 REMARK 3 B33 (A**2) : -4.60990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.63950 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1911 REMARK 3 ANGLE : 1.046 2588 REMARK 3 CHIRALITY : 0.080 278 REMARK 3 PLANARITY : 0.006 328 REMARK 3 DIHEDRAL : 16.422 704 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 21:26) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2522 3.9565 24.0540 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.1384 REMARK 3 T33: 0.1890 T12: -0.0225 REMARK 3 T13: -0.0743 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 5.5380 L22: 6.6519 REMARK 3 L33: 6.3141 L12: -2.1307 REMARK 3 L13: -3.5995 L23: -2.6173 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: 0.8628 S13: 0.3244 REMARK 3 S21: -0.5703 S22: 0.2200 S23: 0.5813 REMARK 3 S31: 0.2403 S32: -0.3937 S33: -0.1422 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 27:37) REMARK 3 ORIGIN FOR THE GROUP (A): 60.1908 4.6514 23.4644 REMARK 3 T TENSOR REMARK 3 T11: 0.2552 T22: 0.4782 REMARK 3 T33: 0.3853 T12: -0.1092 REMARK 3 T13: 0.0581 T23: 0.1808 REMARK 3 L TENSOR REMARK 3 L11: 0.4294 L22: 1.6165 REMARK 3 L33: 3.7370 L12: 0.3507 REMARK 3 L13: -0.9125 L23: -0.2361 REMARK 3 S TENSOR REMARK 3 S11: -0.1857 S12: 0.0761 S13: -0.0447 REMARK 3 S21: -0.2107 S22: -0.0453 S23: -0.3846 REMARK 3 S31: -0.0096 S32: 0.7783 S33: 0.2754 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 38:44) REMARK 3 ORIGIN FOR THE GROUP (A): 48.2123 7.8067 28.3484 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.1231 REMARK 3 T33: 0.1781 T12: 0.0484 REMARK 3 T13: 0.0241 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 1.3150 L22: 0.5028 REMARK 3 L33: 1.1315 L12: 0.3257 REMARK 3 L13: -0.0351 L23: 0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.1841 S12: 0.2709 S13: 0.3617 REMARK 3 S21: -0.1813 S22: -0.1377 S23: -0.3468 REMARK 3 S31: -0.2028 S32: 0.1173 S33: 0.2615 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 45:54) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2407 4.1026 33.2892 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.1116 REMARK 3 T33: 0.1991 T12: -0.0166 REMARK 3 T13: -0.0346 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 7.2116 L22: 3.9308 REMARK 3 L33: 5.1913 L12: 0.9833 REMARK 3 L13: 1.1691 L23: 3.6525 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: 0.6076 S13: 0.4372 REMARK 3 S21: -0.2192 S22: -0.1024 S23: 0.4597 REMARK 3 S31: -0.3736 S32: -0.1180 S33: 0.1339 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 55:65) REMARK 3 ORIGIN FOR THE GROUP (A): 50.0628 -7.9147 28.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.2980 T22: 0.1108 REMARK 3 T33: 0.1182 T12: 0.0144 REMARK 3 T13: 0.0560 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 2.8345 L22: 2.9438 REMARK 3 L33: 3.9643 L12: 1.3000 REMARK 3 L13: -0.5522 L23: 2.5355 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: 0.4259 S13: -0.5329 REMARK 3 S21: -0.4777 S22: -0.0205 S23: -0.3585 REMARK 3 S31: 0.3813 S32: 0.0231 S33: -0.1659 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 66:74) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1327 -5.8381 35.4286 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.0497 REMARK 3 T33: 0.1522 T12: 0.0147 REMARK 3 T13: 0.0765 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.4655 L22: 3.3072 REMARK 3 L33: 0.6302 L12: 1.0038 REMARK 3 L13: 0.3082 L23: -0.4942 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.1104 S13: -0.1737 REMARK 3 S21: -0.1859 S22: -0.0570 S23: -0.2737 REMARK 3 S31: 0.2849 S32: 0.0425 S33: -0.0392 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 75:88) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9689 10.9776 36.8899 REMARK 3 T TENSOR REMARK 3 T11: 0.2506 T22: 0.0868 REMARK 3 T33: 0.1709 T12: 0.0584 REMARK 3 T13: -0.0960 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.3420 L22: 0.3885 REMARK 3 L33: 3.0160 L12: 0.4894 REMARK 3 L13: -1.3890 L23: 0.3858 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.2239 S13: 0.4493 REMARK 3 S21: -0.2556 S22: -0.0096 S23: 0.1836 REMARK 3 S31: -0.4509 S32: -0.2830 S33: -0.3468 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 89:97) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5916 4.6947 34.5693 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.1716 REMARK 3 T33: 0.2043 T12: -0.0375 REMARK 3 T13: 0.0453 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 3.2759 L22: 3.4132 REMARK 3 L33: 4.2016 L12: -3.0236 REMARK 3 L13: 2.6460 L23: -1.7657 REMARK 3 S TENSOR REMARK 3 S11: -0.1106 S12: -0.1787 S13: 0.7370 REMARK 3 S21: 0.0288 S22: -0.0944 S23: -0.3886 REMARK 3 S31: -0.3508 S32: 0.4002 S33: 0.1738 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 98:104) REMARK 3 ORIGIN FOR THE GROUP (A): 62.1800 -6.1779 25.0878 REMARK 3 T TENSOR REMARK 3 T11: 0.3086 T22: 0.3874 REMARK 3 T33: 0.2971 T12: 0.1243 REMARK 3 T13: 0.1275 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 3.1919 L22: 6.2224 REMARK 3 L33: 3.0649 L12: -3.2771 REMARK 3 L13: -3.1095 L23: 2.8730 REMARK 3 S TENSOR REMARK 3 S11: -0.1930 S12: 0.1613 S13: -0.5210 REMARK 3 S21: 0.1749 S22: 0.5396 S23: -0.6104 REMARK 3 S31: 0.6534 S32: 0.9511 S33: -0.2584 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 105:115) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8130 -3.5598 30.4045 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.0441 REMARK 3 T33: 0.0408 T12: 0.0081 REMARK 3 T13: 0.0204 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.3969 L22: 2.2872 REMARK 3 L33: 1.4485 L12: -0.0900 REMARK 3 L13: 0.7545 L23: 0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.0755 S13: -0.0014 REMARK 3 S21: 0.0070 S22: 0.0694 S23: 0.0859 REMARK 3 S31: 0.2293 S32: -0.0584 S33: -0.0106 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 130:137) REMARK 3 ORIGIN FOR THE GROUP (A): 75.7396 6.6772 11.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.2309 T22: 0.5512 REMARK 3 T33: 0.2981 T12: 0.1246 REMARK 3 T13: 0.0827 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.3704 L22: 3.7621 REMARK 3 L33: 4.2864 L12: -1.8717 REMARK 3 L13: -0.8741 L23: 3.6993 REMARK 3 S TENSOR REMARK 3 S11: 0.3149 S12: 0.1566 S13: 0.1127 REMARK 3 S21: 0.0237 S22: 0.1728 S23: 0.2435 REMARK 3 S31: -0.4748 S32: -0.5800 S33: -0.3912 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 13:18) REMARK 3 ORIGIN FOR THE GROUP (A): 79.3690 -10.7920 12.4444 REMARK 3 T TENSOR REMARK 3 T11: 0.6698 T22: 0.7283 REMARK 3 T33: 0.7062 T12: 0.0267 REMARK 3 T13: -0.1956 T23: 0.3648 REMARK 3 L TENSOR REMARK 3 L11: 0.7468 L22: 3.8722 REMARK 3 L33: 3.2390 L12: -1.6951 REMARK 3 L13: 0.6990 L23: -1.3304 REMARK 3 S TENSOR REMARK 3 S11: 0.0759 S12: -0.8915 S13: -0.7598 REMARK 3 S21: 0.8747 S22: -0.1529 S23: -0.7431 REMARK 3 S31: 0.6824 S32: 0.4847 S33: 0.0878 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 19:43) REMARK 3 ORIGIN FOR THE GROUP (A): 73.7684 -2.0989 6.8430 REMARK 3 T TENSOR REMARK 3 T11: 0.0600 T22: 0.3682 REMARK 3 T33: 0.2172 T12: -0.0609 REMARK 3 T13: 0.0186 T23: 0.0955 REMARK 3 L TENSOR REMARK 3 L11: 2.1909 L22: 0.5374 REMARK 3 L33: 0.2877 L12: 0.8833 REMARK 3 L13: 0.4300 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.5735 S13: -0.1335 REMARK 3 S21: 0.0847 S22: -0.1430 S23: -0.0244 REMARK 3 S31: 0.1745 S32: -0.1375 S33: 0.0097 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 44:91) REMARK 3 ORIGIN FOR THE GROUP (A): 88.9206 5.3632 9.0102 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.3173 REMARK 3 T33: 0.1418 T12: -0.0174 REMARK 3 T13: -0.0076 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 4.4375 L22: 1.8544 REMARK 3 L33: 1.5350 L12: -0.6649 REMARK 3 L13: 0.0084 L23: 0.3354 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.3418 S13: 0.3093 REMARK 3 S21: 0.1683 S22: 0.0315 S23: -0.1516 REMARK 3 S31: -0.0059 S32: -0.0312 S33: 0.0041 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 92:126) REMARK 3 ORIGIN FOR THE GROUP (A): 86.7317 -1.8022 0.0702 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.3183 REMARK 3 T33: 0.2441 T12: -0.0333 REMARK 3 T13: -0.0219 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.6513 L22: 0.8008 REMARK 3 L33: 2.8219 L12: -0.7604 REMARK 3 L13: 0.6572 L23: -0.8071 REMARK 3 S TENSOR REMARK 3 S11: -0.1584 S12: 0.1648 S13: -0.0174 REMARK 3 S21: -0.1152 S22: 0.1287 S23: 0.0500 REMARK 3 S31: 0.2046 S32: 0.0633 S33: 0.0399 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000095565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG6000, 0.01M SODIUM CITRATE , PH REMARK 280 7.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.86000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.86000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 212 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 81 REMARK 465 ASN A 82 REMARK 465 ASN A 83 REMARK 465 LYS A 84 REMARK 465 SER A 85 REMARK 465 ALA A 86 REMARK 465 LYS A 87 REMARK 465 THR A 138 REMARK 465 GLN A 139 REMARK 465 GLY A 140 REMARK 465 GLU A 141 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 6 REMARK 465 ILE B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 VAL B 10 REMARK 465 ARG B 11 REMARK 465 PRO B 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 126 140.99 172.95 REMARK 500 THR B 56 -57.65 -121.46 REMARK 500 ASN B 91 -2.87 65.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VVV RELATED DB: PDB DBREF 3VVW A 21 141 UNP Q13137 CACO2_HUMAN 21 141 DBREF 3VVW B 1 126 UNP Q9BXW4 MLP3C_HUMAN 1 126 SEQADV 3VVW GLY A 19 UNP Q13137 EXPRESSION TAG SEQADV 3VVW PRO A 20 UNP Q13137 EXPRESSION TAG SEQADV 3VVW GLY B -1 UNP Q9BXW4 EXPRESSION TAG SEQADV 3VVW PRO B 0 UNP Q9BXW4 EXPRESSION TAG SEQRES 1 A 123 GLY PRO SER GLN VAL ILE PHE ASN SER VAL GLU LYS PHE SEQRES 2 A 123 TYR ILE PRO GLY GLY ASP VAL THR CYS HIS TYR THR PHE SEQRES 3 A 123 THR GLN HIS PHE ILE PRO ARG ARG LYS ASP TRP ILE GLY SEQRES 4 A 123 ILE PHE ARG VAL GLY TRP LYS THR THR ARG GLU TYR TYR SEQRES 5 A 123 THR PHE MET TRP VAL THR LEU PRO ILE ASP LEU ASN ASN SEQRES 6 A 123 LYS SER ALA LYS GLN GLN GLU VAL GLN PHE LYS ALA TYR SEQRES 7 A 123 TYR LEU PRO LYS ASP ASP GLU TYR TYR GLN PHE CYS TYR SEQRES 8 A 123 VAL ASP GLU ASP GLY VAL VAL ARG GLY ALA SER ILE PRO SEQRES 9 A 123 PHE GLN PHE ARG PRO GLU ASN GLU GLU ASP ILE LEU VAL SEQRES 10 A 123 VAL THR THR GLN GLY GLU SEQRES 1 B 128 GLY PRO MET PRO PRO PRO GLN LYS ILE PRO SER VAL ARG SEQRES 2 B 128 PRO PHE LYS GLN ARG LYS SER LEU ALA ILE ARG GLN GLU SEQRES 3 B 128 GLU VAL ALA GLY ILE ARG ALA LYS PHE PRO ASN LYS ILE SEQRES 4 B 128 PRO VAL VAL VAL GLU ARG TYR PRO ARG GLU THR PHE LEU SEQRES 5 B 128 PRO PRO LEU ASP LYS THR LYS PHE LEU VAL PRO GLN GLU SEQRES 6 B 128 LEU THR MET THR GLN PHE LEU SER ILE ILE ARG SER ARG SEQRES 7 B 128 MET VAL LEU ARG ALA THR GLU ALA PHE TYR LEU LEU VAL SEQRES 8 B 128 ASN ASN LYS SER LEU VAL SER MET SER ALA THR MET ALA SEQRES 9 B 128 GLU ILE TYR ARG ASP TYR LYS ASP GLU ASP GLY PHE VAL SEQRES 10 B 128 TYR MET THR TYR ALA SER GLN GLU THR PHE GLY FORMUL 3 HOH *41(H2 O) HELIX 1 1 THR A 65 TYR A 69 5 5 HELIX 2 2 LYS A 94 LEU A 98 5 5 HELIX 3 3 SER B 18 PHE B 33 1 16 HELIX 4 4 THR B 65 ARG B 76 1 12 HELIX 5 5 THR B 100 LYS B 109 1 10 SHEET 1 A 3 VAL A 23 ASN A 26 0 SHEET 2 A 3 VAL A 38 PHE A 44 -1 O THR A 43 N ILE A 24 SHEET 3 A 3 GLN A 89 PHE A 93 -1 O GLN A 89 N TYR A 42 SHEET 1 B 2 PHE A 31 TYR A 32 0 SHEET 2 B 2 GLN A 124 PHE A 125 1 O GLN A 124 N TYR A 32 SHEET 1 C 4 THR A 71 TRP A 74 0 SHEET 2 C 4 TRP A 55 ARG A 60 -1 N ILE A 58 O THR A 71 SHEET 3 C 4 TYR A 105 VAL A 110 -1 O VAL A 110 N TRP A 55 SHEET 4 C 4 VAL A 116 ALA A 119 -1 O ARG A 117 N TYR A 109 SHEET 1 D 5 ILE A 133 VAL A 135 0 SHEET 2 D 5 LYS B 57 VAL B 60 1 O LYS B 57 N LEU A 134 SHEET 3 D 5 ILE B 37 ARG B 43 -1 N VAL B 39 O PHE B 58 SHEET 4 D 5 VAL B 115 ALA B 120 1 O MET B 117 N VAL B 40 SHEET 5 D 5 TYR B 86 VAL B 89 -1 N TYR B 86 O ALA B 120 CISPEP 1 LEU A 77 PRO A 78 0 -3.59 CRYST1 195.720 37.420 40.280 90.00 94.66 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005109 0.000000 0.000416 0.00000 SCALE2 0.000000 0.026724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024909 0.00000