PDB Short entry for 3W1W HEADER LYASE 21-NOV-12 3W1W TITLE PROTEIN-DRUG COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROCHELATASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEME SYNTHASE, PROTOHEME FERRO-LYASE; COMPND 5 EC: 4.99.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FECH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEME SYNTHESIS INHIBITION, FERROCHELATASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ISHII,V.GUPTA,Y.YAMAGUCHI,H.HANDA,O.NUREKI REVDAT 3 08-NOV-23 3W1W 1 REMARK SEQADV LINK REVDAT 2 20-NOV-13 3W1W 1 JRNL REVDAT 1 09-OCT-13 3W1W 0 JRNL AUTH V.GUPTA,S.LIU,H.ANDO,R.ISHII,S.TATENO,Y.KANEKO,M.YUGAMI, JRNL AUTH 2 S.SAKAMOTO,Y.YAMAGUCHI,O.NUREKI,H.HANDA JRNL TITL SALICYLIC ACID INDUCES MITOCHONDRIAL INJURY BY INHIBITING JRNL TITL 2 FERROCHELATASE HEME BIOSYNTHESIS ACTIVITY JRNL REF MOL.PHARMACOL. V. 84 824 2013 JRNL REFN ISSN 0026-895X JRNL PMID 24043703 JRNL DOI 10.1124/MOL.113.087940 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 60798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2858 - 5.6121 0.97 2777 148 0.1949 0.1815 REMARK 3 2 5.6121 - 4.4576 1.00 2713 150 0.1667 0.2013 REMARK 3 3 4.4576 - 3.8950 1.00 2684 143 0.1565 0.1949 REMARK 3 4 3.8950 - 3.5393 1.00 2691 137 0.1791 0.2319 REMARK 3 5 3.5393 - 3.2858 1.00 2660 137 0.1911 0.2384 REMARK 3 6 3.2858 - 3.0922 1.00 2657 157 0.1960 0.1964 REMARK 3 7 3.0922 - 2.9374 1.00 2616 144 0.1949 0.2535 REMARK 3 8 2.9374 - 2.8096 1.00 2669 133 0.2067 0.2182 REMARK 3 9 2.8096 - 2.7015 1.00 2621 157 0.1989 0.2454 REMARK 3 10 2.7015 - 2.6083 1.00 2613 137 0.2076 0.2472 REMARK 3 11 2.6083 - 2.5268 1.00 2652 139 0.1957 0.2777 REMARK 3 12 2.5268 - 2.4546 1.00 2624 129 0.1914 0.2377 REMARK 3 13 2.4546 - 2.3900 1.00 2626 147 0.1969 0.2555 REMARK 3 14 2.3900 - 2.3317 1.00 2615 139 0.1931 0.2718 REMARK 3 15 2.3317 - 2.2787 1.00 2623 135 0.2047 0.2452 REMARK 3 16 2.2787 - 2.2302 0.99 2575 140 0.2112 0.2774 REMARK 3 17 2.2302 - 2.1856 0.99 2611 132 0.2069 0.2530 REMARK 3 18 2.1856 - 2.1444 0.99 2600 127 0.2074 0.2556 REMARK 3 19 2.1444 - 2.1061 0.99 2611 142 0.1988 0.2354 REMARK 3 20 2.1061 - 2.0704 0.99 2548 141 0.2082 0.2512 REMARK 3 21 2.0704 - 2.0370 0.99 2574 138 0.2119 0.2673 REMARK 3 22 2.0370 - 2.0060 0.90 2359 127 0.2275 0.2987 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 33.08 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03310 REMARK 3 B22 (A**2) : -0.16770 REMARK 3 B33 (A**2) : 0.20080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6158 REMARK 3 ANGLE : 1.336 8398 REMARK 3 CHIRALITY : 0.090 957 REMARK 3 PLANARITY : 0.005 1047 REMARK 3 DIHEDRAL : 14.427 2319 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR , SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2HRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PCB, 10% PEG1500, PH 4.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.76550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.14350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.81350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.14350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.76550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.81350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 53 REMARK 465 ALA A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 465 HIS A 58 REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 GLN A 61 REMARK 465 PRO A 62 REMARK 465 GLN A 63 REMARK 465 LYS A 64 REMARK 465 MET B 53 REMARK 465 ALA B 54 REMARK 465 HIS B 55 REMARK 465 HIS B 56 REMARK 465 HIS B 57 REMARK 465 HIS B 58 REMARK 465 HIS B 59 REMARK 465 HIS B 60 REMARK 465 GLN B 61 REMARK 465 PRO B 62 REMARK 465 GLN B 63 REMARK 465 LYS B 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1709 O HOH A 1769 2.18 REMARK 500 OG SER B 195 O HOH B 801 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 103 51.33 34.65 REMARK 500 THR A 198 -85.10 -109.98 REMARK 500 TRP A 227 55.37 -163.30 REMARK 500 ILE A 350 -62.30 -98.86 REMARK 500 VAL A 355 -64.82 -92.89 REMARK 500 ASN A 372 -113.57 40.78 REMARK 500 ILE B 103 52.93 33.79 REMARK 500 THR B 198 -82.34 -110.11 REMARK 500 TRP B 227 53.85 -161.75 REMARK 500 HIS B 341 -160.26 -167.90 REMARK 500 ILE B 350 -64.72 -90.61 REMARK 500 ASN B 372 -115.88 44.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 196 SG REMARK 620 2 FES A1501 S1 119.3 REMARK 620 3 FES A1501 S2 108.1 103.2 REMARK 620 4 CYS A 403 SG 92.6 115.8 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 406 SG REMARK 620 2 FES A1501 S1 114.5 REMARK 620 3 FES A1501 S2 111.7 102.9 REMARK 620 4 CYS A 411 SG 97.5 106.3 124.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 196 SG REMARK 620 2 FES B 501 S1 118.7 REMARK 620 3 FES B 501 S2 111.1 102.9 REMARK 620 4 CYS B 403 SG 91.0 116.0 117.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 406 SG REMARK 620 2 FES B 501 S1 117.0 REMARK 620 3 FES B 501 S2 109.9 101.7 REMARK 620 4 CYS B 411 SG 96.9 107.8 124.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAL A 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 1507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 506 DBREF 3W1W A 61 423 UNP P22830 HEMH_HUMAN 61 423 DBREF 3W1W B 61 423 UNP P22830 HEMH_HUMAN 61 423 SEQADV 3W1W MET A 53 UNP P22830 EXPRESSION TAG SEQADV 3W1W ALA A 54 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS A 55 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS A 56 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS A 57 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS A 58 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS A 59 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS A 60 UNP P22830 EXPRESSION TAG SEQADV 3W1W LEU A 115 UNP P22830 ARG 115 ENGINEERED MUTATION SEQADV 3W1W MET B 53 UNP P22830 EXPRESSION TAG SEQADV 3W1W ALA B 54 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS B 55 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS B 56 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS B 57 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS B 58 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS B 59 UNP P22830 EXPRESSION TAG SEQADV 3W1W HIS B 60 UNP P22830 EXPRESSION TAG SEQADV 3W1W LEU B 115 UNP P22830 ARG 115 ENGINEERED MUTATION SEQRES 1 A 371 MET ALA HIS HIS HIS HIS HIS HIS GLN PRO GLN LYS ARG SEQRES 2 A 371 LYS PRO LYS THR GLY ILE LEU MET LEU ASN MET GLY GLY SEQRES 3 A 371 PRO GLU THR LEU GLY ASP VAL HIS ASP PHE LEU LEU ARG SEQRES 4 A 371 LEU PHE LEU ASP ARG ASP LEU MET THR LEU PRO ILE GLN SEQRES 5 A 371 ASN LYS LEU ALA PRO PHE ILE ALA LYS ARG LEU THR PRO SEQRES 6 A 371 LYS ILE GLN GLU GLN TYR ARG ARG ILE GLY GLY GLY SER SEQRES 7 A 371 PRO ILE LYS ILE TRP THR SER LYS GLN GLY GLU GLY MET SEQRES 8 A 371 VAL LYS LEU LEU ASP GLU LEU SER PRO ASN THR ALA PRO SEQRES 9 A 371 HIS LYS TYR TYR ILE GLY PHE ARG TYR VAL HIS PRO LEU SEQRES 10 A 371 THR GLU GLU ALA ILE GLU GLU MET GLU ARG ASP GLY LEU SEQRES 11 A 371 GLU ARG ALA ILE ALA PHE THR GLN TYR PRO GLN TYR SER SEQRES 12 A 371 CYS SER THR THR GLY SER SER LEU ASN ALA ILE TYR ARG SEQRES 13 A 371 TYR TYR ASN GLN VAL GLY ARG LYS PRO THR MET LYS TRP SEQRES 14 A 371 SER THR ILE ASP ARG TRP PRO THR HIS HIS LEU LEU ILE SEQRES 15 A 371 GLN CYS PHE ALA ASP HIS ILE LEU LYS GLU LEU ASP HIS SEQRES 16 A 371 PHE PRO LEU GLU LYS ARG SER GLU VAL VAL ILE LEU PHE SEQRES 17 A 371 SER ALA HIS SER LEU PRO MET SER VAL VAL ASN ARG GLY SEQRES 18 A 371 ASP PRO TYR PRO GLN GLU VAL SER ALA THR VAL GLN LYS SEQRES 19 A 371 VAL MET GLU ARG LEU GLU TYR CYS ASN PRO TYR ARG LEU SEQRES 20 A 371 VAL TRP GLN SER LYS VAL GLY PRO MET PRO TRP LEU GLY SEQRES 21 A 371 PRO GLN THR ASP GLU SER ILE LYS GLY LEU CYS GLU ARG SEQRES 22 A 371 GLY ARG LYS ASN ILE LEU LEU VAL PRO ILE ALA PHE THR SEQRES 23 A 371 SER ASP HIS ILE GLU THR LEU TYR GLU LEU ASP ILE GLU SEQRES 24 A 371 TYR SER GLN VAL LEU ALA LYS GLU CYS GLY VAL GLU ASN SEQRES 25 A 371 ILE ARG ARG ALA GLU SER LEU ASN GLY ASN PRO LEU PHE SEQRES 26 A 371 SER LYS ALA LEU ALA ASP LEU VAL HIS SER HIS ILE GLN SEQRES 27 A 371 SER ASN GLU LEU CYS SER LYS GLN LEU THR LEU SER CYS SEQRES 28 A 371 PRO LEU CYS VAL ASN PRO VAL CYS ARG GLU THR LYS SER SEQRES 29 A 371 PHE PHE THR SER GLN GLN LEU SEQRES 1 B 371 MET ALA HIS HIS HIS HIS HIS HIS GLN PRO GLN LYS ARG SEQRES 2 B 371 LYS PRO LYS THR GLY ILE LEU MET LEU ASN MET GLY GLY SEQRES 3 B 371 PRO GLU THR LEU GLY ASP VAL HIS ASP PHE LEU LEU ARG SEQRES 4 B 371 LEU PHE LEU ASP ARG ASP LEU MET THR LEU PRO ILE GLN SEQRES 5 B 371 ASN LYS LEU ALA PRO PHE ILE ALA LYS ARG LEU THR PRO SEQRES 6 B 371 LYS ILE GLN GLU GLN TYR ARG ARG ILE GLY GLY GLY SER SEQRES 7 B 371 PRO ILE LYS ILE TRP THR SER LYS GLN GLY GLU GLY MET SEQRES 8 B 371 VAL LYS LEU LEU ASP GLU LEU SER PRO ASN THR ALA PRO SEQRES 9 B 371 HIS LYS TYR TYR ILE GLY PHE ARG TYR VAL HIS PRO LEU SEQRES 10 B 371 THR GLU GLU ALA ILE GLU GLU MET GLU ARG ASP GLY LEU SEQRES 11 B 371 GLU ARG ALA ILE ALA PHE THR GLN TYR PRO GLN TYR SER SEQRES 12 B 371 CYS SER THR THR GLY SER SER LEU ASN ALA ILE TYR ARG SEQRES 13 B 371 TYR TYR ASN GLN VAL GLY ARG LYS PRO THR MET LYS TRP SEQRES 14 B 371 SER THR ILE ASP ARG TRP PRO THR HIS HIS LEU LEU ILE SEQRES 15 B 371 GLN CYS PHE ALA ASP HIS ILE LEU LYS GLU LEU ASP HIS SEQRES 16 B 371 PHE PRO LEU GLU LYS ARG SER GLU VAL VAL ILE LEU PHE SEQRES 17 B 371 SER ALA HIS SER LEU PRO MET SER VAL VAL ASN ARG GLY SEQRES 18 B 371 ASP PRO TYR PRO GLN GLU VAL SER ALA THR VAL GLN LYS SEQRES 19 B 371 VAL MET GLU ARG LEU GLU TYR CYS ASN PRO TYR ARG LEU SEQRES 20 B 371 VAL TRP GLN SER LYS VAL GLY PRO MET PRO TRP LEU GLY SEQRES 21 B 371 PRO GLN THR ASP GLU SER ILE LYS GLY LEU CYS GLU ARG SEQRES 22 B 371 GLY ARG LYS ASN ILE LEU LEU VAL PRO ILE ALA PHE THR SEQRES 23 B 371 SER ASP HIS ILE GLU THR LEU TYR GLU LEU ASP ILE GLU SEQRES 24 B 371 TYR SER GLN VAL LEU ALA LYS GLU CYS GLY VAL GLU ASN SEQRES 25 B 371 ILE ARG ARG ALA GLU SER LEU ASN GLY ASN PRO LEU PHE SEQRES 26 B 371 SER LYS ALA LEU ALA ASP LEU VAL HIS SER HIS ILE GLN SEQRES 27 B 371 SER ASN GLU LEU CYS SER LYS GLN LEU THR LEU SER CYS SEQRES 28 B 371 PRO LEU CYS VAL ASN PRO VAL CYS ARG GLU THR LYS SER SEQRES 29 B 371 PHE PHE THR SER GLN GLN LEU HET FES A1501 4 HET CHD A1502 29 HET CHD A1503 29 HET CHD A1504 29 HET SAL A1505 10 HET EDO A1506 4 HET CHD A1507 29 HET FES B 501 4 HET CHD B 502 29 HET CHD B 503 29 HET CHD B 504 29 HET EDO B 505 4 HET CHD B 506 29 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM CHD CHOLIC ACID HETNAM SAL 2-HYDROXYBENZOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN SAL SALICYLIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FES 2(FE2 S2) FORMUL 4 CHD 8(C24 H40 O5) FORMUL 7 SAL C7 H6 O3 FORMUL 8 EDO 2(C2 H6 O2) FORMUL 16 HOH *417(H2 O) HELIX 1 1 THR A 81 GLY A 83 5 3 HELIX 2 2 ASP A 84 LEU A 94 1 11 HELIX 3 3 ILE A 103 ILE A 126 1 24 HELIX 4 4 PRO A 131 SER A 151 1 21 HELIX 5 5 PRO A 152 ALA A 155 5 4 HELIX 6 6 LEU A 169 ASP A 180 1 12 HELIX 7 7 THR A 198 GLY A 214 1 17 HELIX 8 8 HIS A 230 ASP A 246 1 17 HELIX 9 9 HIS A 247 PHE A 248 5 2 HELIX 10 10 PRO A 249 VAL A 256 5 8 HELIX 11 11 PRO A 266 ASN A 271 1 6 HELIX 12 12 PRO A 275 LEU A 291 1 17 HELIX 13 13 GLN A 314 ARG A 325 1 12 HELIX 14 14 HIS A 341 TYR A 346 1 6 HELIX 15 15 VAL A 355 CYS A 360 1 6 HELIX 16 16 ASN A 374 ASN A 392 1 19 HELIX 17 17 SER A 396 LEU A 401 5 6 HELIX 18 18 ASN A 408 SER A 420 1 13 HELIX 19 19 THR B 81 GLY B 83 5 3 HELIX 20 20 ASP B 84 LEU B 94 1 11 HELIX 21 21 ILE B 103 ILE B 126 1 24 HELIX 22 22 PRO B 131 SER B 151 1 21 HELIX 23 23 PRO B 152 ALA B 155 5 4 HELIX 24 24 LEU B 169 ASP B 180 1 12 HELIX 25 25 THR B 198 GLY B 214 1 17 HELIX 26 26 HIS B 230 HIS B 247 1 18 HELIX 27 27 PHE B 248 VAL B 256 5 9 HELIX 28 28 PRO B 266 ASN B 271 1 6 HELIX 29 29 PRO B 275 LEU B 291 1 17 HELIX 30 30 GLN B 314 ARG B 325 1 12 HELIX 31 31 HIS B 341 TYR B 346 1 6 HELIX 32 32 VAL B 355 CYS B 360 1 6 HELIX 33 33 ASN B 374 ASN B 392 1 19 HELIX 34 34 SER B 396 LEU B 401 5 6 HELIX 35 35 ASN B 408 SER B 420 1 13 SHEET 1 A 4 HIS A 157 PHE A 163 0 SHEET 2 A 4 THR A 69 ASN A 75 1 N MET A 73 O TYR A 160 SHEET 3 A 4 ARG A 184 THR A 189 1 O ARG A 184 N GLY A 70 SHEET 4 A 4 LYS A 220 ILE A 224 1 O SER A 222 N ALA A 187 SHEET 1 B 4 TYR A 297 GLN A 302 0 SHEET 2 B 4 VAL A 257 HIS A 263 1 N PHE A 260 O VAL A 300 SHEET 3 B 4 ASN A 329 PRO A 334 1 O VAL A 333 N SER A 261 SHEET 4 B 4 ASN A 364 ARG A 367 1 O ARG A 366 N LEU A 332 SHEET 1 C 4 HIS B 157 PHE B 163 0 SHEET 2 C 4 THR B 69 ASN B 75 1 N ILE B 71 O LYS B 158 SHEET 3 C 4 ARG B 184 THR B 189 1 O ARG B 184 N GLY B 70 SHEET 4 C 4 LYS B 220 ILE B 224 1 O SER B 222 N ALA B 187 SHEET 1 D 4 TYR B 297 GLN B 302 0 SHEET 2 D 4 VAL B 257 HIS B 263 1 N PHE B 260 O VAL B 300 SHEET 3 D 4 ASN B 329 PRO B 334 1 O LEU B 331 N LEU B 259 SHEET 4 D 4 ASN B 364 ARG B 367 1 O ARG B 366 N LEU B 332 LINK SG CYS A 196 FE1 FES A1501 1555 1555 2.41 LINK SG CYS A 403 FE1 FES A1501 1555 1555 2.46 LINK SG CYS A 406 FE2 FES A1501 1555 1555 2.48 LINK SG CYS A 411 FE2 FES A1501 1555 1555 2.45 LINK SG CYS B 196 FE1 FES B 501 1555 1555 2.45 LINK SG CYS B 403 FE1 FES B 501 1555 1555 2.44 LINK SG CYS B 406 FE2 FES B 501 1555 1555 2.48 LINK SG CYS B 411 FE2 FES B 501 1555 1555 2.43 CISPEP 1 ALA A 155 PRO A 156 0 3.38 CISPEP 2 HIS A 167 PRO A 168 0 -5.58 CISPEP 3 GLY A 312 PRO A 313 0 3.29 CISPEP 4 ALA B 155 PRO B 156 0 -2.19 CISPEP 5 HIS B 167 PRO B 168 0 -4.08 CISPEP 6 GLY B 312 PRO B 313 0 1.90 SITE 1 AC1 5 CYS A 196 SER A 402 CYS A 403 CYS A 406 SITE 2 AC1 5 CYS A 411 SITE 1 AC2 14 MET A 76 LEU A 92 LEU A 98 SER A 197 SITE 2 AC2 14 HIS A 263 VAL A 269 TRP A 310 CHD A1503 SITE 3 AC2 14 HOH A1620 HOH A1640 HOH A1643 HOH A1653 SITE 4 AC2 14 HOH A1739 HOH A1784 SITE 1 AC3 10 ARG A 114 LEU A 115 MET A 308 TRP A 310 SITE 2 AC3 10 CHD A1502 CHD A1504 HOH A1657 HOH A1711 SITE 3 AC3 10 HOH A1759 HOH A1791 SITE 1 AC4 7 THR A 100 LEU A 101 PRO A 102 LEU A 107 SITE 2 AC4 7 CHD A1503 LYS B 106 PHE B 110 SITE 1 AC5 9 PRO A 277 GLN A 278 SER A 281 PRO B 277 SITE 2 AC5 9 GLN B 278 SER B 281 TRP B 301 LEU B 311 SITE 3 AC5 9 HOH B 605 SITE 1 AC6 6 ASP A 97 CYS A 196 SER A 201 ASN A 204 SITE 2 AC6 6 ASN A 408 CYS A 411 SITE 1 AC7 10 GLU A 80 ILE A 126 GLY A 127 GLY A 129 SITE 2 AC7 10 THR A 400 ARG A 412 LYS A 415 HOH A1696 SITE 3 AC7 10 HOH A1743 ARG B 327 SITE 1 AC8 5 CYS B 196 ARG B 272 CYS B 403 CYS B 406 SITE 2 AC8 5 CYS B 411 SITE 1 AC9 4 ARG B 114 TRP B 310 CHD B 503 HOH B 800 SITE 1 BC1 5 PHE A 110 THR B 100 PRO B 102 LEU B 107 SITE 2 BC1 5 CHD B 502 SITE 1 BC2 13 LEU B 92 PHE B 93 LEU B 98 SER B 197 SITE 2 BC2 13 HIS B 263 TRP B 310 HOH B 638 HOH B 640 SITE 3 BC2 13 HOH B 660 HOH B 665 HOH B 670 HOH B 701 SITE 4 BC2 13 HOH B 754 SITE 1 BC3 7 ASP B 97 CYS B 196 GLY B 200 SER B 201 SITE 2 BC3 7 ASN B 204 ASN B 408 CYS B 411 SITE 1 BC4 11 GLY A 326 ARG A 327 GLU B 80 ILE B 126 SITE 2 BC4 11 GLY B 127 GLY B 129 LEU B 345 THR B 400 SITE 3 BC4 11 LYS B 415 HOH B 709 HOH B 813 CRYST1 87.531 93.627 110.287 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009067 0.00000