PDB Short entry for 3W3M HEADER IMMUNE SYSTEM 22-DEC-12 3W3M TITLE CRYSTAL STRUCTURE OF HUMAN TLR8 IN COMPLEX WITH RESIQUIMOD (R848) TITLE 2 CRYSTAL FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-827; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TLR8, UNQ249/PRO286; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: S2 KEYWDS LEUCINE RICH REPEAT, RNA, GLYCOSYLATION, RNA RECOGNITION, SSRNA, KEYWDS 2 RECEPTOR, RNA RECEPTOR, INNATE IMMUNITY, RNA BINDING, SECRETED, KEYWDS 3 RESIQUIMOD, ANTIVIRUS AND ANTITUMOR DRUG, ANTIVIRUS AND ANTITUMOR KEYWDS 4 DRUG BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.TANJI,U.OHTO,T.SHIMIZU REVDAT 2 29-JUL-20 3W3M 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 03-APR-13 3W3M 0 JRNL AUTH H.TANJI,U.OHTO,T.SHIBATA,K.MIYAKE,T.SHIMIZU JRNL TITL STRUCTURAL REORGANIZATION OF THE TOLL-LIKE RECEPTOR 8 DIMER JRNL TITL 2 INDUCED BY AGONISTIC LIGANDS JRNL REF SCIENCE V. 339 1426 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23520111 JRNL DOI 10.1126/SCIENCE.1229159 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 26592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8401 - 5.8125 0.98 2577 141 0.2133 0.2329 REMARK 3 2 5.8125 - 4.6155 0.98 2541 152 0.1930 0.2516 REMARK 3 3 4.6155 - 4.0326 0.98 2536 135 0.1731 0.2048 REMARK 3 4 4.0326 - 3.6641 0.98 2494 142 0.1829 0.2169 REMARK 3 5 3.6641 - 3.4016 0.98 2552 124 0.2197 0.2374 REMARK 3 6 3.4016 - 3.2011 0.98 2477 131 0.2478 0.3524 REMARK 3 7 3.2011 - 3.0409 0.98 2556 136 0.2685 0.3018 REMARK 3 8 3.0409 - 2.9085 0.98 2479 128 0.3008 0.2846 REMARK 3 9 2.9085 - 2.7966 0.97 2511 123 0.3020 0.3338 REMARK 3 10 2.7966 - 2.7000 0.97 2530 127 0.3097 0.3597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6429 REMARK 3 ANGLE : 1.090 8738 REMARK 3 CHIRALITY : 0.089 1039 REMARK 3 PLANARITY : 0.004 1091 REMARK 3 DIHEDRAL : 21.321 2459 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -11.7860 -53.9555 16.3463 REMARK 3 T TENSOR REMARK 3 T11: 0.3179 T22: 0.2966 REMARK 3 T33: 0.2088 T12: 0.1975 REMARK 3 T13: 0.0090 T23: 0.1468 REMARK 3 L TENSOR REMARK 3 L11: 1.6134 L22: 0.5584 REMARK 3 L33: 1.5189 L12: -0.1246 REMARK 3 L13: -0.0198 L23: 0.2665 REMARK 3 S TENSOR REMARK 3 S11: -0.1248 S12: -0.1853 S13: -0.2877 REMARK 3 S21: 0.1671 S22: 0.2661 S23: 0.1268 REMARK 3 S31: 0.0836 S32: -0.2614 S33: -0.1136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W3M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000095843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12%(W/V) PEG3350, 0.2M POTASSIUM REMARK 280 FORMATE, 0.1M SODIUM CITRATE, PH 5.1, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.38500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.38500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -X, Y, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 TRP A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 ASN A 29 REMARK 465 PHE A 30 REMARK 465 GLN A 101 REMARK 465 HIS A 102 REMARK 465 GLN A 103 REMARK 465 ASN A 104 REMARK 465 GLY A 105 REMARK 465 ASN A 106 REMARK 465 PRO A 107 REMARK 465 GLY A 108 REMARK 465 ILE A 109 REMARK 465 GLN A 110 REMARK 465 SER A 111 REMARK 465 ASN A 112 REMARK 465 VAL A 434 REMARK 465 LYS A 435 REMARK 465 ASP A 436 REMARK 465 THR A 437 REMARK 465 ARG A 438 REMARK 465 GLN A 439 REMARK 465 SER A 440 REMARK 465 TYR A 441 REMARK 465 ALA A 442 REMARK 465 ASN A 443 REMARK 465 SER A 444 REMARK 465 SER A 445 REMARK 465 SER A 446 REMARK 465 PHE A 447 REMARK 465 GLN A 448 REMARK 465 ARG A 449 REMARK 465 HIS A 450 REMARK 465 ILE A 451 REMARK 465 ARG A 452 REMARK 465 LYS A 453 REMARK 465 ARG A 454 REMARK 465 ARG A 455 REMARK 465 SER A 456 REMARK 465 THR A 457 REMARK 465 ASP A 458 REMARK 465 LEU A 819 REMARK 465 THR A 820 REMARK 465 THR A 821 REMARK 465 CYS A 822 REMARK 465 VAL A 823 REMARK 465 SER A 824 REMARK 465 ASP A 825 REMARK 465 VAL A 826 REMARK 465 THR A 827 REMARK 465 GLU A 828 REMARK 465 PHE A 829 REMARK 465 LEU A 830 REMARK 465 VAL A 831 REMARK 465 PRO A 832 REMARK 465 ARG A 833 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 31 OG REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 VAL A 100 CG1 CG2 REMARK 470 LEU A 433 CG CD1 CD2 REMARK 470 GLU A 818 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 776 CB CYS A 803 1.58 REMARK 500 O3 BMA D 3 O5 MAN D 4 2.01 REMARK 500 N SER A 725 O HOH A 1023 2.17 REMARK 500 OG SER A 733 O GLU A 757 2.18 REMARK 500 O4 NAG D 2 O5 BMA D 3 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 280 OE2 GLU A 734 3455 2.08 REMARK 500 NH2 ARG A 429 O HOH A 1060 2555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -10.54 66.22 REMARK 500 ARG A 128 -62.53 -97.70 REMARK 500 LYS A 173 -62.79 -106.21 REMARK 500 PHE A 183 -137.84 53.65 REMARK 500 SER A 214 -14.86 78.11 REMARK 500 PRO A 264 43.07 -88.37 REMARK 500 SER A 329 -70.49 -117.87 REMARK 500 VAL A 378 77.29 50.53 REMARK 500 GLU A 427 68.33 60.75 REMARK 500 PRO A 505 -173.42 -67.21 REMARK 500 LEU A 550 -4.36 66.15 REMARK 500 SER A 565 -9.50 -55.16 REMARK 500 LYS A 587 -60.48 -120.66 REMARK 500 ASP A 601 -17.35 68.85 REMARK 500 GLU A 734 -2.77 62.31 REMARK 500 THR A 777 -176.21 -66.53 REMARK 500 ALA A 804 -77.22 -93.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W3G RELATED DB: PDB REMARK 900 RELATED ID: 3W3J RELATED DB: PDB REMARK 900 RELATED ID: 3W3K RELATED DB: PDB REMARK 900 RELATED ID: 3W3L RELATED DB: PDB REMARK 900 RELATED ID: 3W3N RELATED DB: PDB DBREF 3W3M A 27 827 UNP Q9NR97 TLR8_HUMAN 27 827 SEQADV 3W3M ARG A 23 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M SER A 24 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M PRO A 25 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M TRP A 26 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M GLU A 828 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M PHE A 829 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M LEU A 830 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M VAL A 831 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M PRO A 832 UNP Q9NR97 EXPRESSION TAG SEQADV 3W3M ARG A 833 UNP Q9NR97 EXPRESSION TAG SEQRES 1 A 811 ARG SER PRO TRP GLU GLU ASN PHE SER ARG SER TYR PRO SEQRES 2 A 811 CYS ASP GLU LYS LYS GLN ASN ASP SER VAL ILE ALA GLU SEQRES 3 A 811 CYS SER ASN ARG ARG LEU GLN GLU VAL PRO GLN THR VAL SEQRES 4 A 811 GLY LYS TYR VAL THR GLU LEU ASP LEU SER ASP ASN PHE SEQRES 5 A 811 ILE THR HIS ILE THR ASN GLU SER PHE GLN GLY LEU GLN SEQRES 6 A 811 ASN LEU THR LYS ILE ASN LEU ASN HIS ASN PRO ASN VAL SEQRES 7 A 811 GLN HIS GLN ASN GLY ASN PRO GLY ILE GLN SER ASN GLY SEQRES 8 A 811 LEU ASN ILE THR ASP GLY ALA PHE LEU ASN LEU LYS ASN SEQRES 9 A 811 LEU ARG GLU LEU LEU LEU GLU ASP ASN GLN LEU PRO GLN SEQRES 10 A 811 ILE PRO SER GLY LEU PRO GLU SER LEU THR GLU LEU SER SEQRES 11 A 811 LEU ILE GLN ASN ASN ILE TYR ASN ILE THR LYS GLU GLY SEQRES 12 A 811 ILE SER ARG LEU ILE ASN LEU LYS ASN LEU TYR LEU ALA SEQRES 13 A 811 TRP ASN CYS TYR PHE ASN LYS VAL CYS GLU LYS THR ASN SEQRES 14 A 811 ILE GLU ASP GLY VAL PHE GLU THR LEU THR ASN LEU GLU SEQRES 15 A 811 LEU LEU SER LEU SER PHE ASN SER LEU SER HIS VAL PRO SEQRES 16 A 811 PRO LYS LEU PRO SER SER LEU ARG LYS LEU PHE LEU SER SEQRES 17 A 811 ASN THR GLN ILE LYS TYR ILE SER GLU GLU ASP PHE LYS SEQRES 18 A 811 GLY LEU ILE ASN LEU THR LEU LEU ASP LEU SER GLY ASN SEQRES 19 A 811 CYS PRO ARG CYS PHE ASN ALA PRO PHE PRO CYS VAL PRO SEQRES 20 A 811 CYS ASP GLY GLY ALA SER ILE ASN ILE ASP ARG PHE ALA SEQRES 21 A 811 PHE GLN ASN LEU THR GLN LEU ARG TYR LEU ASN LEU SER SEQRES 22 A 811 SER THR SER LEU ARG LYS ILE ASN ALA ALA TRP PHE LYS SEQRES 23 A 811 ASN MET PRO HIS LEU LYS VAL LEU ASP LEU GLU PHE ASN SEQRES 24 A 811 TYR LEU VAL GLY GLU ILE ALA SER GLY ALA PHE LEU THR SEQRES 25 A 811 MET LEU PRO ARG LEU GLU ILE LEU ASP LEU SER PHE ASN SEQRES 26 A 811 TYR ILE LYS GLY SER TYR PRO GLN HIS ILE ASN ILE SER SEQRES 27 A 811 ARG ASN PHE SER LYS LEU LEU SER LEU ARG ALA LEU HIS SEQRES 28 A 811 LEU ARG GLY TYR VAL PHE GLN GLU LEU ARG GLU ASP ASP SEQRES 29 A 811 PHE GLN PRO LEU MET GLN LEU PRO ASN LEU SER THR ILE SEQRES 30 A 811 ASN LEU GLY ILE ASN PHE ILE LYS GLN ILE ASP PHE LYS SEQRES 31 A 811 LEU PHE GLN ASN PHE SER ASN LEU GLU ILE ILE TYR LEU SEQRES 32 A 811 SER GLU ASN ARG ILE SER PRO LEU VAL LYS ASP THR ARG SEQRES 33 A 811 GLN SER TYR ALA ASN SER SER SER PHE GLN ARG HIS ILE SEQRES 34 A 811 ARG LYS ARG ARG SER THR ASP PHE GLU PHE ASP PRO HIS SEQRES 35 A 811 SER ASN PHE TYR HIS PHE THR ARG PRO LEU ILE LYS PRO SEQRES 36 A 811 GLN CYS ALA ALA TYR GLY LYS ALA LEU ASP LEU SER LEU SEQRES 37 A 811 ASN SER ILE PHE PHE ILE GLY PRO ASN GLN PHE GLU ASN SEQRES 38 A 811 LEU PRO ASP ILE ALA CYS LEU ASN LEU SER ALA ASN SER SEQRES 39 A 811 ASN ALA GLN VAL LEU SER GLY THR GLU PHE SER ALA ILE SEQRES 40 A 811 PRO HIS VAL LYS TYR LEU ASP LEU THR ASN ASN ARG LEU SEQRES 41 A 811 ASP PHE ASP ASN ALA SER ALA LEU THR GLU LEU SER ASP SEQRES 42 A 811 LEU GLU VAL LEU ASP LEU SER TYR ASN SER HIS TYR PHE SEQRES 43 A 811 ARG ILE ALA GLY VAL THR HIS HIS LEU GLU PHE ILE GLN SEQRES 44 A 811 ASN PHE THR ASN LEU LYS VAL LEU ASN LEU SER HIS ASN SEQRES 45 A 811 ASN ILE TYR THR LEU THR ASP LYS TYR ASN LEU GLU SER SEQRES 46 A 811 LYS SER LEU VAL GLU LEU VAL PHE SER GLY ASN ARG LEU SEQRES 47 A 811 ASP ILE LEU TRP ASN ASP ASP ASP ASN ARG TYR ILE SER SEQRES 48 A 811 ILE PHE LYS GLY LEU LYS ASN LEU THR ARG LEU ASP LEU SEQRES 49 A 811 SER LEU ASN ARG LEU LYS HIS ILE PRO ASN GLU ALA PHE SEQRES 50 A 811 LEU ASN LEU PRO ALA SER LEU THR GLU LEU HIS ILE ASN SEQRES 51 A 811 ASP ASN MET LEU LYS PHE PHE ASN TRP THR LEU LEU GLN SEQRES 52 A 811 GLN PHE PRO ARG LEU GLU LEU LEU ASP LEU ARG GLY ASN SEQRES 53 A 811 LYS LEU LEU PHE LEU THR ASP SER LEU SER ASP PHE THR SEQRES 54 A 811 SER SER LEU ARG THR LEU LEU LEU SER HIS ASN ARG ILE SEQRES 55 A 811 SER HIS LEU PRO SER GLY PHE LEU SER GLU VAL SER SER SEQRES 56 A 811 LEU LYS HIS LEU ASP LEU SER SER ASN LEU LEU LYS THR SEQRES 57 A 811 ILE ASN LYS SER ALA LEU GLU THR LYS THR THR THR LYS SEQRES 58 A 811 LEU SER MET LEU GLU LEU HIS GLY ASN PRO PHE GLU CYS SEQRES 59 A 811 THR CYS ASP ILE GLY ASP PHE ARG ARG TRP MET ASP GLU SEQRES 60 A 811 HIS LEU ASN VAL LYS ILE PRO ARG LEU VAL ASP VAL ILE SEQRES 61 A 811 CYS ALA SER PRO GLY ASP GLN ARG GLY LYS SER ILE VAL SEQRES 62 A 811 SER LEU GLU LEU THR THR CYS VAL SER ASP VAL THR GLU SEQRES 63 A 811 PHE LEU VAL PRO ARG MODRES 3W3M ASN A 395 ASN GLYCOSYLATION SITE MODRES 3W3M ASN A 640 ASN GLYCOSYLATION SITE MODRES 3W3M ASN A 546 ASN GLYCOSYLATION SITE MODRES 3W3M ASN A 590 ASN GLYCOSYLATION SITE MODRES 3W3M ASN A 293 ASN GLYCOSYLATION SITE MODRES 3W3M ASN A 511 ASN GLYCOSYLATION SITE MODRES 3W3M ASN A 680 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET RX8 A 901 23 HET NAG A 910 14 HET NAG A 916 14 HET NAG A 917 14 HET NAG A 918 14 HET SO4 A 919 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM RX8 1-[4-AMINO-2-(ETHOXYMETHYL)-1H-IMIDAZO[4,5-C]QUINOLIN- HETNAM 2 RX8 1-YL]-2-METHYLPROPAN-2-OL HETNAM SO4 SULFATE ION HETSYN RX8 R848, RESIQUIMOD FORMUL 2 NAG 10(C8 H15 N O6) FORMUL 2 BMA 3(C6 H12 O6) FORMUL 2 MAN 4(C6 H12 O6) FORMUL 5 RX8 C17 H22 N4 O2 FORMUL 10 SO4 O4 S 2- FORMUL 11 HOH *68(H2 O) HELIX 1 1 CYS A 270 ALA A 274 5 5 HELIX 2 2 ASN A 303 PHE A 307 5 5 HELIX 3 3 LEU A 323 SER A 329 1 7 HELIX 4 4 PHE A 332 LEU A 336 5 5 HELIX 5 5 SER A 360 LEU A 366 5 7 HELIX 6 6 ARG A 383 MET A 391 5 9 HELIX 7 7 LEU A 413 PHE A 417 5 5 HELIX 8 8 LYS A 476 ALA A 481 1 6 HELIX 9 9 LEU A 577 PHE A 583 5 7 HELIX 10 10 ARG A 619 TRP A 624 1 6 HELIX 11 11 PRO A 655 ASN A 661 1 7 HELIX 12 12 ASN A 680 PHE A 687 5 8 HELIX 13 13 SER A 706 THR A 711 1 6 HELIX 14 14 THR A 777 ASP A 779 5 3 HELIX 15 15 ILE A 780 HIS A 790 1 11 SHEET 1 A28 ASP A 37 GLN A 41 0 SHEET 2 A28 SER A 44 GLU A 48 -1 O GLU A 48 N ASP A 37 SHEET 3 A28 GLU A 67 ASP A 69 1 O GLU A 67 N ALA A 47 SHEET 4 A28 LYS A 91 ASN A 93 1 O ASN A 93 N LEU A 68 SHEET 5 A28 GLU A 129 LEU A 131 1 O LEU A 131 N ILE A 92 SHEET 6 A28 GLU A 150 SER A 152 1 O SER A 152 N LEU A 130 SHEET 7 A28 ASN A 174 TYR A 176 1 O TYR A 176 N LEU A 151 SHEET 8 A28 LEU A 205 SER A 207 1 O LEU A 205 N LEU A 175 SHEET 9 A28 LYS A 226 PHE A 228 1 O PHE A 228 N LEU A 206 SHEET 10 A28 LEU A 250 ASP A 252 1 O ASP A 252 N LEU A 227 SHEET 11 A28 TYR A 291 ASN A 293 1 O ASN A 293 N LEU A 251 SHEET 12 A28 VAL A 315 ASP A 317 1 O ASP A 317 N LEU A 292 SHEET 13 A28 ILE A 341 ASP A 343 1 O ILE A 341 N LEU A 316 SHEET 14 A28 ALA A 371 HIS A 373 1 O HIS A 373 N LEU A 342 SHEET 15 A28 THR A 398 ASN A 400 1 O THR A 398 N LEU A 372 SHEET 16 A28 ILE A 422 TYR A 424 1 O TYR A 424 N ILE A 399 SHEET 17 A28 ALA A 485 ASP A 487 1 O ASP A 487 N ILE A 423 SHEET 18 A28 CYS A 509 ASN A 511 1 O ASN A 511 N LEU A 486 SHEET 19 A28 TYR A 534 ASP A 536 1 O ASP A 536 N LEU A 510 SHEET 20 A28 VAL A 558 ASP A 560 1 O ASP A 560 N LEU A 535 SHEET 21 A28 VAL A 588 ASN A 590 1 O ASN A 590 N LEU A 559 SHEET 22 A28 GLU A 612 VAL A 614 1 O GLU A 612 N LEU A 589 SHEET 23 A28 ARG A 643 ASP A 645 1 O ASP A 645 N LEU A 613 SHEET 24 A28 GLU A 668 HIS A 670 1 O HIS A 670 N LEU A 644 SHEET 25 A28 LEU A 692 ASP A 694 1 O ASP A 694 N LEU A 669 SHEET 26 A28 THR A 716 LEU A 718 1 O LEU A 718 N LEU A 693 SHEET 27 A28 HIS A 740 ASP A 742 1 O ASP A 742 N LEU A 717 SHEET 28 A28 MET A 766 GLU A 768 1 O MET A 766 N LEU A 741 SHEET 1 B 2 HIS A 77 ILE A 78 0 SHEET 2 B 2 ASN A 115 ILE A 116 1 O ASN A 115 N ILE A 78 SHEET 1 C 2 ASN A 160 ILE A 161 0 SHEET 2 C 2 ASN A 191 ILE A 192 1 O ASN A 191 N ILE A 161 SHEET 1 D 2 TYR A 236 ILE A 237 0 SHEET 2 D 2 ASN A 277 ILE A 278 1 O ASN A 277 N ILE A 237 SHEET 1 E 2 GLU A 381 LEU A 382 0 SHEET 2 E 2 GLN A 408 ILE A 409 1 O GLN A 408 N LEU A 382 SSBOND 1 CYS A 36 CYS A 49 1555 1555 2.03 SSBOND 2 CYS A 181 CYS A 187 1555 1555 2.03 SSBOND 3 CYS A 257 CYS A 270 1555 1555 2.03 SSBOND 4 CYS A 260 CYS A 267 1555 1555 2.03 SSBOND 5 CYS A 479 CYS A 509 1555 1555 2.03 SSBOND 6 CYS A 776 CYS A 803 1555 1555 2.02 LINK ND2 ASN A 293 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 395 C1 NAG A 917 1555 1555 1.44 LINK ND2 ASN A 511 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 546 C1 NAG A 910 1555 1555 1.44 LINK ND2 ASN A 590 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 640 C1 NAG A 918 1555 1555 1.44 LINK ND2 ASN A 680 C1 NAG A 916 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.40 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.46 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.45 CISPEP 1 TYR A 34 PRO A 35 0 -9.86 CISPEP 2 ASN A 97 PRO A 98 0 -13.16 CISPEP 3 SER A 805 PRO A 806 0 1.45 CRYST1 136.770 106.000 72.320 90.00 106.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007312 0.000000 0.002227 0.00000 SCALE2 0.000000 0.009434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014455 0.00000