PDB Short entry for 3WAO HEADER APOPTOSIS 06-MAY-13 3WAO TITLE CRYSTAL STRUCTURE OF ATG13 LIR-FUSED HUMAN LC3B_2-119 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 13, MICROTUBULE-ASSOCIATED COMPND 3 PROTEINS 1A/1B LIGHT CHAIN 3B; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: RESIDUES 436-447, RESIDUES 2-119; COMPND 6 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B, AUTOPHAGY-RELATED COMPND 7 UBIQUITIN-LIKE MODIFIER LC3 B, MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2, COMPND 8 MAP1A/MAP1B LIGHT CHAIN 3 B, MAP1A/MAP1B LC3 B, MICROTUBULE- COMPND 9 ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 BETA; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: THE FUSION PROTEIN OF AUTOPHAGY-RELATED GENE 13 LIR COMPND 12 (RESIDUES 436-447), LINKER (GLY SER) AND MICROTUBULE-ASSOCIATED COMPND 13 PROTEINS 1A/1B LIGHT CHAIN 3B (RESIDUES 2-119) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP1LC3B, MAP1ALC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS UBIQUITIN-LIKE FOLD, AUTOPHAGY, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR H.SUZUKI,K.TABATA,E.MORITA,M.KAWASAKI,R.KATO,R.C.J.DOBSON, AUTHOR 2 T.YOSHIMORI,S.WAKATSUKI REVDAT 5 08-NOV-23 3WAO 1 SEQADV REVDAT 4 23-AUG-17 3WAO 1 SOURCE REMARK REVDAT 3 16-APR-14 3WAO 1 REMARK REVDAT 2 12-MAR-14 3WAO 1 JRNL REVDAT 1 25-DEC-13 3WAO 0 JRNL AUTH H.SUZUKI,K.TABATA,E.MORITA,M.KAWASAKI,R.KATO,R.C.DOBSON, JRNL AUTH 2 T.YOSHIMORI,S.WAKATSUKI JRNL TITL STRUCTURAL BASIS OF THE AUTOPHAGY-RELATED LC3/ATG13 LIR JRNL TITL 2 COMPLEX: RECOGNITION AND INTERACTION MECHANISM. JRNL REF STRUCTURE V. 22 47 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24290141 JRNL DOI 10.1016/J.STR.2013.09.023 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1113 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4113 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.33000 REMARK 3 B22 (A**2) : -2.33000 REMARK 3 B33 (A**2) : 4.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.400 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.349 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.124 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4190 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5641 ; 1.801 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 7.631 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;40.156 ;23.915 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 810 ;20.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.684 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3131 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 14.392 -38.101 -32.720 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1476 REMARK 3 T33: 0.1540 T12: -0.0192 REMARK 3 T13: -0.0362 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.4562 L22: 2.1569 REMARK 3 L33: 0.6068 L12: -0.9828 REMARK 3 L13: 0.4445 L23: -0.9783 REMARK 3 S TENSOR REMARK 3 S11: 0.1845 S12: -0.0625 S13: -0.1441 REMARK 3 S21: -0.0632 S22: -0.0018 S23: 0.0597 REMARK 3 S31: 0.0451 S32: -0.0296 S33: -0.1827 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2011 1.3679 -28.5657 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.1263 REMARK 3 T33: 0.2898 T12: -0.0061 REMARK 3 T13: -0.0043 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 3.5872 L22: 1.6833 REMARK 3 L33: 0.4030 L12: -2.4050 REMARK 3 L13: 1.1578 L23: -0.7732 REMARK 3 S TENSOR REMARK 3 S11: -0.1494 S12: -0.2241 S13: 0.4465 REMARK 3 S21: 0.0161 S22: 0.0594 S23: -0.3158 REMARK 3 S31: 0.0127 S32: -0.1093 S33: 0.0900 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 133 REMARK 3 ORIGIN FOR THE GROUP (A): 11.072 -2.796 -35.086 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.1170 REMARK 3 T33: 0.2123 T12: -0.0088 REMARK 3 T13: 0.0496 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 2.3804 L22: 2.8485 REMARK 3 L33: 0.8102 L12: -1.2896 REMARK 3 L13: 0.4600 L23: -0.5050 REMARK 3 S TENSOR REMARK 3 S11: 0.1207 S12: 0.0795 S13: -0.0627 REMARK 3 S21: -0.2545 S22: -0.0135 S23: -0.3154 REMARK 3 S31: -0.1143 S32: -0.0859 S33: -0.1072 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 11 D 134 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3525 -28.0324 -31.7534 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.1803 REMARK 3 T33: 0.0966 T12: -0.0332 REMARK 3 T13: -0.0016 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.4920 L22: 0.1784 REMARK 3 L33: 1.2229 L12: 0.1947 REMARK 3 L13: 0.6432 L23: -0.2647 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: 0.2055 S13: -0.0346 REMARK 3 S21: 0.0324 S22: 0.0532 S23: -0.0501 REMARK 3 S31: 0.0298 S32: -0.0152 S33: 0.0204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000096097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16435 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 43.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VTU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 10% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.16600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.58300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.74900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 THR A 8 REMARK 465 HIS A 9 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 ASN B 7 REMARK 465 THR B 8 REMARK 465 HIS B 9 REMARK 465 THR B 134 REMARK 465 PHE B 135 REMARK 465 GLY C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 SER C 5 REMARK 465 GLY C 6 REMARK 465 ASN C 7 REMARK 465 THR C 8 REMARK 465 HIS C 9 REMARK 465 THR C 134 REMARK 465 PHE C 135 REMARK 465 GLY D 2 REMARK 465 SER D 3 REMARK 465 SER D 4 REMARK 465 SER D 5 REMARK 465 GLY D 6 REMARK 465 ASN D 7 REMARK 465 THR D 8 REMARK 465 HIS D 9 REMARK 465 ASP D 10 REMARK 465 PHE D 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 19 N - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 VAL A 105 CB - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 GLN B 59 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 SER B 108 N - CA - C ANGL. DEV. = -27.0 DEGREES REMARK 500 LYS C 65 CB - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 MET C 104 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 VAL C 107 N - CA - C ANGL. DEV. = -24.2 DEGREES REMARK 500 SER C 108 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 VAL D 105 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 -74.53 -130.64 REMARK 500 GLU B 20 70.47 58.48 REMARK 500 LYS B 21 132.88 -37.97 REMARK 500 MET B 104 -69.23 -120.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C 106 VAL C 107 140.83 REMARK 500 THR D 109 PRO D 110 -73.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VTU RELATED DB: PDB REMARK 900 RELATED ID: 3VTV RELATED DB: PDB REMARK 900 RELATED ID: 3VTW RELATED DB: PDB REMARK 900 RELATED ID: 3WAL RELATED DB: PDB REMARK 900 RELATED ID: 3WAM RELATED DB: PDB REMARK 900 RELATED ID: 3WAN RELATED DB: PDB REMARK 900 RELATED ID: 3WAP RELATED DB: PDB DBREF 3WAO A 4 15 UNP O75143 ATG13_HUMAN 436 447 DBREF 3WAO A 18 135 UNP Q9GZQ8 MLP3B_HUMAN 2 119 DBREF 3WAO B 4 15 UNP O75143 ATG13_HUMAN 436 447 DBREF 3WAO B 18 135 UNP Q9GZQ8 MLP3B_HUMAN 2 119 DBREF 3WAO C 4 15 UNP O75143 ATG13_HUMAN 436 447 DBREF 3WAO C 18 135 UNP Q9GZQ8 MLP3B_HUMAN 2 119 DBREF 3WAO D 4 15 UNP O75143 ATG13_HUMAN 436 447 DBREF 3WAO D 18 135 UNP Q9GZQ8 MLP3B_HUMAN 2 119 SEQADV 3WAO GLY A 2 UNP O75143 EXPRESSION TAG SEQADV 3WAO SER A 3 UNP O75143 EXPRESSION TAG SEQADV 3WAO GLY A 16 UNP O75143 LINKER SEQADV 3WAO SER A 17 UNP O75143 LINKER SEQADV 3WAO GLY B 2 UNP O75143 EXPRESSION TAG SEQADV 3WAO SER B 3 UNP O75143 EXPRESSION TAG SEQADV 3WAO GLY B 16 UNP O75143 LINKER SEQADV 3WAO SER B 17 UNP O75143 LINKER SEQADV 3WAO GLY C 2 UNP O75143 EXPRESSION TAG SEQADV 3WAO SER C 3 UNP O75143 EXPRESSION TAG SEQADV 3WAO GLY C 16 UNP O75143 LINKER SEQADV 3WAO SER C 17 UNP O75143 LINKER SEQADV 3WAO GLY D 2 UNP O75143 EXPRESSION TAG SEQADV 3WAO SER D 3 UNP O75143 EXPRESSION TAG SEQADV 3WAO GLY D 16 UNP O75143 LINKER SEQADV 3WAO SER D 17 UNP O75143 LINKER SEQRES 1 A 134 GLY SER SER SER GLY ASN THR HIS ASP ASP PHE VAL MET SEQRES 2 A 134 ILE GLY SER PRO SER GLU LYS THR PHE LYS GLN ARG ARG SEQRES 3 A 134 THR PHE GLU GLN ARG VAL GLU ASP VAL ARG LEU ILE ARG SEQRES 4 A 134 GLU GLN HIS PRO THR LYS ILE PRO VAL ILE ILE GLU ARG SEQRES 5 A 134 TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR SEQRES 6 A 134 LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU SEQRES 7 A 134 ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU ASN ALA ASN SEQRES 8 A 134 GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SER MET VAL SEQRES 9 A 134 SER VAL SER THR PRO ILE SER GLU VAL TYR GLU SER GLU SEQRES 10 A 134 LYS ASP GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER SEQRES 11 A 134 GLN GLU THR PHE SEQRES 1 B 134 GLY SER SER SER GLY ASN THR HIS ASP ASP PHE VAL MET SEQRES 2 B 134 ILE GLY SER PRO SER GLU LYS THR PHE LYS GLN ARG ARG SEQRES 3 B 134 THR PHE GLU GLN ARG VAL GLU ASP VAL ARG LEU ILE ARG SEQRES 4 B 134 GLU GLN HIS PRO THR LYS ILE PRO VAL ILE ILE GLU ARG SEQRES 5 B 134 TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR SEQRES 6 B 134 LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU SEQRES 7 B 134 ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU ASN ALA ASN SEQRES 8 B 134 GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SER MET VAL SEQRES 9 B 134 SER VAL SER THR PRO ILE SER GLU VAL TYR GLU SER GLU SEQRES 10 B 134 LYS ASP GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER SEQRES 11 B 134 GLN GLU THR PHE SEQRES 1 C 134 GLY SER SER SER GLY ASN THR HIS ASP ASP PHE VAL MET SEQRES 2 C 134 ILE GLY SER PRO SER GLU LYS THR PHE LYS GLN ARG ARG SEQRES 3 C 134 THR PHE GLU GLN ARG VAL GLU ASP VAL ARG LEU ILE ARG SEQRES 4 C 134 GLU GLN HIS PRO THR LYS ILE PRO VAL ILE ILE GLU ARG SEQRES 5 C 134 TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR SEQRES 6 C 134 LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU SEQRES 7 C 134 ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU ASN ALA ASN SEQRES 8 C 134 GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SER MET VAL SEQRES 9 C 134 SER VAL SER THR PRO ILE SER GLU VAL TYR GLU SER GLU SEQRES 10 C 134 LYS ASP GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER SEQRES 11 C 134 GLN GLU THR PHE SEQRES 1 D 134 GLY SER SER SER GLY ASN THR HIS ASP ASP PHE VAL MET SEQRES 2 D 134 ILE GLY SER PRO SER GLU LYS THR PHE LYS GLN ARG ARG SEQRES 3 D 134 THR PHE GLU GLN ARG VAL GLU ASP VAL ARG LEU ILE ARG SEQRES 4 D 134 GLU GLN HIS PRO THR LYS ILE PRO VAL ILE ILE GLU ARG SEQRES 5 D 134 TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR SEQRES 6 D 134 LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU SEQRES 7 D 134 ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU ASN ALA ASN SEQRES 8 D 134 GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SER MET VAL SEQRES 9 D 134 SER VAL SER THR PRO ILE SER GLU VAL TYR GLU SER GLU SEQRES 10 D 134 LYS ASP GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER SEQRES 11 D 134 GLN GLU THR PHE HELIX 1 1 THR A 22 ARG A 27 1 6 HELIX 2 2 THR A 28 HIS A 43 1 16 HELIX 3 3 ASN A 75 LEU A 87 1 13 HELIX 4 4 PRO A 110 LYS A 119 1 10 HELIX 5 5 THR B 28 HIS B 43 1 16 HELIX 6 6 ASN B 75 LEU B 87 1 13 HELIX 7 7 PRO B 110 LYS B 119 1 10 HELIX 8 8 THR C 28 HIS C 43 1 16 HELIX 9 9 ASN C 75 LEU C 87 1 13 HELIX 10 10 PRO C 110 LYS C 119 1 10 HELIX 11 11 THR D 22 ARG D 27 1 6 HELIX 12 12 THR D 28 HIS D 43 1 16 HELIX 13 13 ASN D 75 GLN D 88 1 14 HELIX 14 14 PRO D 110 LYS D 119 1 10 SHEET 1 A 5 LYS A 67 PRO A 71 0 SHEET 2 A 5 LYS A 46 ARG A 53 -1 N ILE A 47 O VAL A 70 SHEET 3 A 5 LEU A 125 ALA A 130 1 O LEU A 125 N ILE A 50 SHEET 4 A 5 PHE A 96 VAL A 99 -1 N PHE A 96 O ALA A 130 SHEET 5 A 5 HIS A 102 SER A 103 -1 O HIS A 102 N VAL A 99 SHEET 1 B 5 VAL B 13 MET B 14 0 SHEET 2 B 5 LYS C 67 PRO C 71 1 O LYS C 67 N VAL B 13 SHEET 3 B 5 LYS C 46 ARG C 53 -1 N ILE C 47 O VAL C 70 SHEET 4 B 5 LEU C 125 ALA C 130 1 O LEU C 125 N PRO C 48 SHEET 5 B 5 PHE C 96 VAL C 99 -1 N LEU C 98 O VAL C 128 SHEET 1 C 4 LYS B 67 PRO B 71 0 SHEET 2 C 4 LYS B 46 ARG B 53 -1 N ILE B 47 O VAL B 70 SHEET 3 C 4 LEU B 125 ALA B 130 1 O LEU B 125 N ILE B 50 SHEET 4 C 4 PHE B 96 VAL B 99 -1 N LEU B 98 O VAL B 128 SHEET 1 D 5 LYS D 67 PRO D 71 0 SHEET 2 D 5 LYS D 46 ARG D 53 -1 N VAL D 49 O PHE D 68 SHEET 3 D 5 LEU D 125 ALA D 130 1 O MET D 127 N GLU D 52 SHEET 4 D 5 PHE D 96 VAL D 99 -1 N LEU D 98 O VAL D 128 SHEET 5 D 5 HIS D 102 SER D 103 -1 O HIS D 102 N VAL D 99 CRYST1 64.569 64.569 130.332 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015487 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007673 0.00000