PDB Short entry for 3WE4 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 29-JUN-13 3WE4 TITLE CRYSTAL STRUCTURE OF S6K1 KINASE DOMAIN IN COMPLEX WITH A PYRIMIDINE TITLE 2 DERIVATIVE PF-4708671 2-{[4-(5-ETHYLPYRIMIDIN-4-YL)PIPERAZIN-1- TITLE 3 YL]METHYL}-5-(TRIFLUOROMETHYL)-1H-BENZIMIDAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE BETA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 78-399; COMPND 5 SYNONYM: S6K-BETA-1, S6K1, 70 KDA RIBOSOMAL PROTEIN S6 KINASE 1, COMPND 6 RIBOSOMAL PROTEIN S6 KINASE I, SERINE/THREONINE-PROTEIN KINASE 14A, COMPND 7 P70 RIBOSOMAL S6 KINASE ALPHA; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPS6KB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SERINE/THREONINE PROTEIN KINASE DOMAIN, TRANSFERASE, PHOSPHORYLATION, KEYWDS 2 ATP-BINDING, ZINC-BINDING, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.NIWA,M.SHIROUZU,S.YOKOYAMA REVDAT 4 08-NOV-23 3WE4 1 REMARK SEQADV LINK REVDAT 3 29-OCT-14 3WE4 1 JRNL REVDAT 2 13-AUG-14 3WE4 1 JRNL REVDAT 1 06-AUG-14 3WE4 0 JRNL AUTH H.NIWA,J.MIKUNI,S.SASAKI,Y.TOMABECHI,K.HONDA,M.IKEDA, JRNL AUTH 2 N.OHSAWA,M.WAKIYAMA,N.HANDA,M.SHIROUZU,T.HONMA,A.TANAKA, JRNL AUTH 3 S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURES OF THE S6K1 KINASE DOMAIN IN COMPLEXES JRNL TITL 2 WITH INHIBITORS JRNL REF J.STRUCT.FUNCT.GENOM. V. 15 153 2014 JRNL REFN ISSN 1345-711X JRNL PMID 25078151 JRNL DOI 10.1007/S10969-014-9188-8 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4706 - 5.1251 0.92 2515 108 0.1751 0.2403 REMARK 3 2 5.1251 - 4.0699 0.97 2653 136 0.1406 0.1632 REMARK 3 3 4.0699 - 3.5560 0.99 2705 134 0.1388 0.2291 REMARK 3 4 3.5560 - 3.2311 1.00 2733 128 0.1654 0.2625 REMARK 3 5 3.2311 - 2.9996 1.00 2745 141 0.1777 0.2745 REMARK 3 6 2.9996 - 2.8228 1.00 2689 168 0.1809 0.2281 REMARK 3 7 2.8228 - 2.6815 1.00 2742 138 0.1817 0.2100 REMARK 3 8 2.6815 - 2.5648 1.00 2705 168 0.1735 0.2482 REMARK 3 9 2.5648 - 2.4661 1.00 2721 136 0.1893 0.2342 REMARK 3 10 2.4661 - 2.3810 1.00 2695 166 0.1949 0.2005 REMARK 3 11 2.3810 - 2.3066 1.00 2711 161 0.2043 0.2595 REMARK 3 12 2.3066 - 2.2407 1.00 2709 146 0.2079 0.2271 REMARK 3 13 2.2407 - 2.1817 1.00 2737 133 0.2168 0.2595 REMARK 3 14 2.1817 - 2.1285 1.00 2692 162 0.2268 0.2506 REMARK 3 15 2.1285 - 2.0801 1.00 2729 121 0.2514 0.2632 REMARK 3 16 2.0801 - 2.0358 1.00 2754 132 0.2717 0.3054 REMARK 3 17 2.0358 - 1.9951 0.97 2661 150 0.2985 0.3177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2368 REMARK 3 ANGLE : 1.011 3193 REMARK 3 CHIRALITY : 0.039 343 REMARK 3 PLANARITY : 0.005 401 REMARK 3 DIHEDRAL : 14.873 907 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 85:191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6176 8.3234 -11.6328 REMARK 3 T TENSOR REMARK 3 T11: 0.3318 T22: 0.4894 REMARK 3 T33: 0.3287 T12: -0.0036 REMARK 3 T13: 0.0060 T23: -0.0952 REMARK 3 L TENSOR REMARK 3 L11: 3.1760 L22: 1.8387 REMARK 3 L33: 2.8235 L12: -0.7222 REMARK 3 L13: -1.0508 L23: 0.7123 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.1944 S13: -0.1348 REMARK 3 S21: 0.2798 S22: 0.0371 S23: -0.1077 REMARK 3 S31: 0.1509 S32: 0.4427 S33: -0.0624 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 192:374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9341 14.3341 -2.2159 REMARK 3 T TENSOR REMARK 3 T11: 0.3095 T22: 0.3497 REMARK 3 T33: 0.3355 T12: -0.0550 REMARK 3 T13: 0.0989 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 2.8909 L22: 2.3168 REMARK 3 L33: 4.2935 L12: -1.3947 REMARK 3 L13: -1.4761 L23: 1.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: 0.0949 S13: -0.3055 REMARK 3 S21: 0.2387 S22: -0.0714 S23: 0.1494 REMARK 3 S31: 0.0816 S32: -0.1244 S33: 0.0261 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000096220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.995 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3A62 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 3.7-3.9M SODIUM REMARK 280 FORMATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.43050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.46500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.71525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.46500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.14575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.46500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.46500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.71525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.46500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.46500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.14575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.43050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 536 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 71 REMARK 465 SER A 72 REMARK 465 PHE A 73 REMARK 465 THR A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 SER A 78 REMARK 465 VAL A 79 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 GLU A 84 REMARK 465 GLY A 247 REMARK 465 THR A 248 REMARK 465 VAL A 249 REMARK 465 SER A 375 REMARK 465 GLU A 376 REMARK 465 GLU A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 379 REMARK 465 SER A 380 REMARK 465 GLN A 381 REMARK 465 PHE A 382 REMARK 465 ASP A 383 REMARK 465 SER A 384 REMARK 465 LYS A 385 REMARK 465 PHE A 386 REMARK 465 THR A 387 REMARK 465 ARG A 388 REMARK 465 GLN A 389 REMARK 465 THR A 390 REMARK 465 PRO A 391 REMARK 465 VAL A 392 REMARK 465 ASP A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 ASP A 396 REMARK 465 ASP A 397 REMARK 465 SER A 398 REMARK 465 THR A 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 504 O HOH A 596 1.91 REMARK 500 O HOH A 682 O HOH A 683 2.04 REMARK 500 OG1 THR A 250 O3P TPO A 252 2.12 REMARK 500 O HOH A 643 O HOH A 655 2.12 REMARK 500 O HOH A 597 O HOH A 598 2.13 REMARK 500 O HOH A 674 O HOH A 680 2.14 REMARK 500 O HOH A 628 O HOH A 667 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 164 -163.62 -112.19 REMARK 500 ARG A 217 -49.87 75.27 REMARK 500 ASN A 271 -158.57 -151.77 REMARK 500 ASP A 342 -131.99 50.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 240 SG REMARK 620 2 HIS A 245 ND1 101.5 REMARK 620 3 HIS A 251 ND1 107.5 98.5 REMARK 620 4 CYS A 254 SG 113.9 124.0 109.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5FI A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WF5 RELATED DB: PDB REMARK 900 RELATED ID: 3WF6 RELATED DB: PDB REMARK 900 RELATED ID: 3WF7 RELATED DB: PDB REMARK 900 RELATED ID: 3WF8 RELATED DB: PDB REMARK 900 RELATED ID: 3WF9 RELATED DB: PDB DBREF 3WE4 A 78 399 UNP P23443 KS6B1_HUMAN 78 399 SEQADV 3WE4 GLY A 71 UNP P23443 EXPRESSION TAG SEQADV 3WE4 SER A 72 UNP P23443 EXPRESSION TAG SEQADV 3WE4 PHE A 73 UNP P23443 EXPRESSION TAG SEQADV 3WE4 THR A 74 UNP P23443 EXPRESSION TAG SEQADV 3WE4 SER A 75 UNP P23443 EXPRESSION TAG SEQADV 3WE4 SER A 76 UNP P23443 EXPRESSION TAG SEQADV 3WE4 GLY A 77 UNP P23443 EXPRESSION TAG SEQRES 1 A 329 GLY SER PHE THR SER SER GLY SER VAL ASN ARG GLY PRO SEQRES 2 A 329 GLU LYS ILE ARG PRO GLU CYS PHE GLU LEU LEU ARG VAL SEQRES 3 A 329 LEU GLY LYS GLY GLY TYR GLY LYS VAL PHE GLN VAL ARG SEQRES 4 A 329 LYS VAL THR GLY ALA ASN THR GLY LYS ILE PHE ALA MET SEQRES 5 A 329 LYS VAL LEU LYS LYS ALA MET ILE VAL ARG ASN ALA LYS SEQRES 6 A 329 ASP THR ALA HIS THR LYS ALA GLU ARG ASN ILE LEU GLU SEQRES 7 A 329 GLU VAL LYS HIS PRO PHE ILE VAL ASP LEU ILE TYR ALA SEQRES 8 A 329 PHE GLN THR GLY GLY LYS LEU TYR LEU ILE LEU GLU TYR SEQRES 9 A 329 LEU SER GLY GLY GLU LEU PHE MET GLN LEU GLU ARG GLU SEQRES 10 A 329 GLY ILE PHE MET GLU ASP THR ALA CYS PHE TYR LEU ALA SEQRES 11 A 329 GLU ILE SER MET ALA LEU GLY HIS LEU HIS GLN LYS GLY SEQRES 12 A 329 ILE ILE TYR ARG ASP LEU LYS PRO GLU ASN ILE MET LEU SEQRES 13 A 329 ASN HIS GLN GLY HIS VAL LYS LEU THR ASP PHE GLY LEU SEQRES 14 A 329 CYS LYS GLU SER ILE HIS ASP GLY THR VAL THR HIS TPO SEQRES 15 A 329 PHE CYS GLY THR ILE GLU TYR MET ALA PRO GLU ILE LEU SEQRES 16 A 329 MET ARG SER GLY HIS ASN ARG ALA VAL ASP TRP TRP SER SEQRES 17 A 329 LEU GLY ALA LEU MET TYR ASP MET LEU THR GLY ALA PRO SEQRES 18 A 329 PRO PHE THR GLY GLU ASN ARG LYS LYS THR ILE ASP LYS SEQRES 19 A 329 ILE LEU LYS CYS LYS LEU ASN LEU PRO PRO TYR LEU THR SEQRES 20 A 329 GLN GLU ALA ARG ASP LEU LEU LYS LYS LEU LEU LYS ARG SEQRES 21 A 329 ASN ALA ALA SER ARG LEU GLY ALA GLY PRO GLY ASP ALA SEQRES 22 A 329 GLY GLU VAL GLN ALA HIS PRO PHE PHE ARG HIS ILE ASN SEQRES 23 A 329 TRP GLU GLU LEU LEU ALA ARG LYS VAL GLU PRO PRO PHE SEQRES 24 A 329 LYS PRO LEU LEU GLN SER GLU GLU ASP VAL SER GLN PHE SEQRES 25 A 329 ASP SER LYS PHE THR ARG GLN THR PRO VAL ASP SER PRO SEQRES 26 A 329 ASP ASP SER THR MODRES 3WE4 TPO A 252 THR PHOSPHOTHREONINE HET TPO A 252 11 HET ZN A 401 1 HET 5FI A 402 28 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM 5FI 2-{[4-(5-ETHYLPYRIMIDIN-4-YL)PIPERAZIN-1-YL]METHYL}-5- HETNAM 2 5FI (TRIFLUOROMETHYL)-1H-BENZIMIDAZOLE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN ZN 2+ FORMUL 3 5FI C19 H21 F3 N6 FORMUL 4 HOH *183(H2 O) HELIX 1 1 ARG A 87 GLU A 89 5 3 HELIX 2 2 LYS A 127 ARG A 132 1 6 HELIX 3 3 ASN A 133 VAL A 150 1 18 HELIX 4 4 GLU A 179 GLY A 188 1 10 HELIX 5 5 MET A 191 LYS A 212 1 22 HELIX 6 6 LYS A 220 GLU A 222 5 3 HELIX 7 7 ALA A 261 MET A 266 1 6 HELIX 8 8 ARG A 272 GLY A 289 1 18 HELIX 9 9 ASN A 297 CYS A 308 1 12 HELIX 10 10 THR A 317 LEU A 328 1 12 HELIX 11 11 ASN A 331 ARG A 335 5 5 HELIX 12 12 ASP A 342 ALA A 348 1 7 HELIX 13 13 HIS A 349 ARG A 353 5 5 HELIX 14 14 ASN A 356 ALA A 362 1 7 HELIX 15 15 LYS A 370 GLN A 374 5 5 SHEET 1 A 5 PHE A 91 LYS A 99 0 SHEET 2 A 5 GLY A 103 LYS A 110 -1 O ARG A 109 N GLU A 92 SHEET 3 A 5 ILE A 119 LYS A 126 -1 O VAL A 124 N LYS A 104 SHEET 4 A 5 LYS A 167 GLU A 173 -1 O LEU A 170 N LYS A 123 SHEET 5 A 5 LEU A 158 GLN A 163 -1 N ILE A 159 O ILE A 171 SHEET 1 B 2 ILE A 224 LEU A 226 0 SHEET 2 B 2 VAL A 232 LEU A 234 -1 O LYS A 233 N MET A 225 LINK C HIS A 251 N TPO A 252 1555 1555 1.33 LINK C TPO A 252 N PHE A 253 1555 1555 1.32 LINK SG CYS A 240 ZN ZN A 401 1555 1555 2.44 LINK ND1 HIS A 245 ZN ZN A 401 1555 1555 2.30 LINK ND1 HIS A 251 ZN ZN A 401 1555 1555 2.06 LINK SG CYS A 254 ZN ZN A 401 1555 1555 2.34 SITE 1 AC1 4 CYS A 240 HIS A 245 HIS A 251 CYS A 254 SITE 1 AC2 18 GLY A 98 LYS A 99 GLY A 100 TYR A 102 SITE 2 AC2 18 GLY A 103 LYS A 104 ALA A 121 LYS A 123 SITE 3 AC2 18 LEU A 125 LEU A 172 GLU A 173 TYR A 174 SITE 4 AC2 18 LEU A 175 MET A 225 LYS A 241 HOH A 514 SITE 5 AC2 18 HOH A 539 HOH A 571 CRYST1 70.930 70.930 146.861 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006809 0.00000