PDB Short entry for 3WF8 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 17-JUL-13 3WF8 TITLE CRYSTAL STRUCTURE OF S6K1 KINASE DOMAIN IN COMPLEX WITH A QUINOLINE TITLE 2 DERIVATIVE 2-OXO-2-[(4-SULFAMOYLPHENYL)AMINO]ETHYL 7,8,9,10- TITLE 3 TETRAHYDRO-6H-CYCLOHEPTA[B]QUINOLINE-11-CARBOXYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE BETA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 78-399; COMPND 5 SYNONYM: S6K-BETA-1, S6K1, 70 KDA RIBOSOMAL PROTEIN S6 KINASE 1, COMPND 6 RIBOSOMAL PROTEIN S6 KINASE I, SERINE/THREONINE-PROTEIN KINASE 14A, COMPND 7 P70 RIBOSOMAL S6 KINASE ALPHA; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPS6KB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SERINE/THREONINE PROTEIN KINASE DOMAIN, TRANSFERASE, PHOSPHORYLATION, KEYWDS 2 ATP-BINDING, ZINC-BINDING, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.NIWA,M.SHIROUZU,S.YOKOYAMA REVDAT 3 29-OCT-14 3WF8 1 JRNL REVDAT 2 13-AUG-14 3WF8 1 JRNL REVDAT 1 06-AUG-14 3WF8 0 JRNL AUTH H.NIWA,J.MIKUNI,S.SASAKI,Y.TOMABECHI,K.HONDA,M.IKEDA, JRNL AUTH 2 N.OHSAWA,M.WAKIYAMA,N.HANDA,M.SHIROUZU,T.HONMA,A.TANAKA, JRNL AUTH 3 S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURES OF THE S6K1 KINASE DOMAIN IN COMPLEXES JRNL TITL 2 WITH INHIBITORS JRNL REF J.STRUCT.FUNCT.GENOM. V. 15 153 2014 JRNL REFN ISSN 1345-711X JRNL PMID 25078151 JRNL DOI 10.1007/S10969-014-9188-8 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1690) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 33300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9407 - 5.6119 0.99 2692 122 0.1776 0.1886 REMARK 3 2 5.6119 - 4.4562 0.99 2669 147 0.1651 0.1780 REMARK 3 3 4.4562 - 3.8935 0.99 2720 119 0.1577 0.2003 REMARK 3 4 3.8935 - 3.5377 0.99 2643 181 0.1708 0.2060 REMARK 3 5 3.5377 - 3.2843 0.99 2615 157 0.1853 0.2712 REMARK 3 6 3.2843 - 3.0907 0.99 2656 141 0.1990 0.2495 REMARK 3 7 3.0907 - 2.9360 0.99 2698 144 0.2053 0.2309 REMARK 3 8 2.9360 - 2.8082 0.99 2677 137 0.2055 0.2284 REMARK 3 9 2.8082 - 2.7001 0.99 2615 176 0.2123 0.2561 REMARK 3 10 2.7001 - 2.6070 0.98 2610 136 0.2198 0.2870 REMARK 3 11 2.6070 - 2.5255 0.98 2682 100 0.2127 0.2573 REMARK 3 12 2.5255 - 2.4533 0.98 2641 141 0.2244 0.2612 REMARK 3 13 2.4533 - 2.3887 0.98 2637 115 0.2156 0.2566 REMARK 3 14 2.3887 - 2.3305 0.97 2644 142 0.2317 0.2937 REMARK 3 15 2.3305 - 2.2775 0.97 2651 118 0.2254 0.2815 REMARK 3 16 2.2775 - 2.2290 0.97 2561 161 0.2241 0.2461 REMARK 3 17 2.2290 - 2.1844 0.97 2598 144 0.2178 0.2421 REMARK 3 18 2.1844 - 2.1432 0.96 2565 164 0.2316 0.2686 REMARK 3 19 2.1432 - 2.1049 0.97 2571 147 0.2467 0.3197 REMARK 3 20 2.1049 - 2.0693 0.96 2586 138 0.2659 0.3195 REMARK 3 21 2.0693 - 2.0359 0.96 2561 144 0.2695 0.2876 REMARK 3 22 2.0359 - 2.0046 0.96 2618 120 0.2822 0.3191 REMARK 3 23 2.0046 - 1.9751 0.88 2384 141 0.2955 0.3575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2387 REMARK 3 ANGLE : 0.991 3217 REMARK 3 CHIRALITY : 0.042 344 REMARK 3 PLANARITY : 0.004 404 REMARK 3 DIHEDRAL : 16.981 912 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 85:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9152 16.3653 -41.5109 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.0618 REMARK 3 T33: 0.1885 T12: 0.0262 REMARK 3 T13: 0.0182 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 7.6709 L22: 3.0357 REMARK 3 L33: 3.4098 L12: -0.6143 REMARK 3 L13: -0.1466 L23: -0.4570 REMARK 3 S TENSOR REMARK 3 S11: 0.2441 S12: 0.1142 S13: -0.4254 REMARK 3 S21: -0.1559 S22: -0.1566 S23: 0.3508 REMARK 3 S31: 0.2162 S32: -0.2320 S33: -0.0499 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 119:166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1555 7.3641 -40.5695 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.1488 REMARK 3 T33: 0.1552 T12: 0.0246 REMARK 3 T13: -0.0024 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 3.5621 L22: 0.8129 REMARK 3 L33: 3.5176 L12: -1.2220 REMARK 3 L13: -1.3427 L23: -0.6292 REMARK 3 S TENSOR REMARK 3 S11: 0.1839 S12: 0.3556 S13: 0.1187 REMARK 3 S21: -0.2197 S22: -0.1991 S23: -0.0798 REMARK 3 S31: 0.1071 S32: 0.1802 S33: 0.0128 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 167:231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5935 7.7723 -22.5214 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.1327 REMARK 3 T33: 0.2007 T12: -0.0181 REMARK 3 T13: 0.0229 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.2400 L22: 0.8289 REMARK 3 L33: 3.3996 L12: -0.2585 REMARK 3 L13: 0.4032 L23: -0.5760 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.1391 S13: 0.2452 REMARK 3 S21: 0.1643 S22: 0.0020 S23: 0.0299 REMARK 3 S31: -0.4890 S32: -0.0804 S33: 0.0263 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 232:372 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0238 4.9101 -16.9579 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.2068 REMARK 3 T33: 0.1488 T12: -0.0090 REMARK 3 T13: 0.0247 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 2.2964 L22: 1.5950 REMARK 3 L33: 1.4412 L12: 0.6761 REMARK 3 L13: -0.4209 L23: -0.6907 REMARK 3 S TENSOR REMARK 3 S11: 0.1380 S12: -0.2150 S13: 0.1397 REMARK 3 S21: 0.1327 S22: -0.1144 S23: -0.0297 REMARK 3 S31: -0.1486 S32: 0.1368 S33: -0.0053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JUL-13. REMARK 100 THE RCSB ID CODE IS RCSB096260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 2.9M SODIUM FORMATE, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.86850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.26750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.86850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.26750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 49.20575 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -63.04851 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 591 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 770 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 71 REMARK 465 SER A 72 REMARK 465 PHE A 73 REMARK 465 THR A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 SER A 78 REMARK 465 VAL A 79 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 GLU A 84 REMARK 465 LEU A 373 REMARK 465 GLN A 374 REMARK 465 SER A 375 REMARK 465 GLU A 376 REMARK 465 GLU A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 379 REMARK 465 SER A 380 REMARK 465 GLN A 381 REMARK 465 PHE A 382 REMARK 465 ASP A 383 REMARK 465 SER A 384 REMARK 465 LYS A 385 REMARK 465 PHE A 386 REMARK 465 THR A 387 REMARK 465 ARG A 388 REMARK 465 GLN A 389 REMARK 465 THR A 390 REMARK 465 PRO A 391 REMARK 465 VAL A 392 REMARK 465 ASP A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 ASP A 396 REMARK 465 ASP A 397 REMARK 465 SER A 398 REMARK 465 THR A 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 767 O HOH A 776 2.18 REMARK 500 OH TYR A 198 O HOH A 587 2.19 REMARK 500 OE1 GLN A 183 NH2 ARG A 186 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 164 -168.13 -117.64 REMARK 500 ARG A 217 -42.54 68.12 REMARK 500 ASP A 236 70.04 61.17 REMARK 500 ASN A 271 -158.24 -145.82 REMARK 500 LEU A 328 55.33 -92.58 REMARK 500 ASP A 342 -126.78 49.51 REMARK 500 PRO A 371 -18.92 -46.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 245 ND1 REMARK 620 2 HIS A 251 ND1 99.1 REMARK 620 3 CYS A 254 SG 114.4 114.0 REMARK 620 4 CYS A 240 SG 105.4 106.8 115.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F76 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WE4 RELATED DB: PDB REMARK 900 RELATED ID: 3WF5 RELATED DB: PDB REMARK 900 RELATED ID: 3WF6 RELATED DB: PDB REMARK 900 RELATED ID: 3WF7 RELATED DB: PDB REMARK 900 RELATED ID: 3WF9 RELATED DB: PDB DBREF 3WF8 A 78 399 UNP P23443 KS6B1_HUMAN 78 399 SEQADV 3WF8 GLY A 71 UNP P23443 EXPRESSION TAG SEQADV 3WF8 SER A 72 UNP P23443 EXPRESSION TAG SEQADV 3WF8 PHE A 73 UNP P23443 EXPRESSION TAG SEQADV 3WF8 THR A 74 UNP P23443 EXPRESSION TAG SEQADV 3WF8 SER A 75 UNP P23443 EXPRESSION TAG SEQADV 3WF8 SER A 76 UNP P23443 EXPRESSION TAG SEQADV 3WF8 GLY A 77 UNP P23443 EXPRESSION TAG SEQRES 1 A 329 GLY SER PHE THR SER SER GLY SER VAL ASN ARG GLY PRO SEQRES 2 A 329 GLU LYS ILE ARG PRO GLU CYS PHE GLU LEU LEU ARG VAL SEQRES 3 A 329 LEU GLY LYS GLY GLY TYR GLY LYS VAL PHE GLN VAL ARG SEQRES 4 A 329 LYS VAL THR GLY ALA ASN THR GLY LYS ILE PHE ALA MET SEQRES 5 A 329 LYS VAL LEU LYS LYS ALA MET ILE VAL ARG ASN ALA LYS SEQRES 6 A 329 ASP THR ALA HIS THR LYS ALA GLU ARG ASN ILE LEU GLU SEQRES 7 A 329 GLU VAL LYS HIS PRO PHE ILE VAL ASP LEU ILE TYR ALA SEQRES 8 A 329 PHE GLN THR GLY GLY LYS LEU TYR LEU ILE LEU GLU TYR SEQRES 9 A 329 LEU SER GLY GLY GLU LEU PHE MET GLN LEU GLU ARG GLU SEQRES 10 A 329 GLY ILE PHE MET GLU ASP THR ALA CYS PHE TYR LEU ALA SEQRES 11 A 329 GLU ILE SER MET ALA LEU GLY HIS LEU HIS GLN LYS GLY SEQRES 12 A 329 ILE ILE TYR ARG ASP LEU LYS PRO GLU ASN ILE MET LEU SEQRES 13 A 329 ASN HIS GLN GLY HIS VAL LYS LEU THR ASP PHE GLY LEU SEQRES 14 A 329 CYS LYS GLU SER ILE HIS ASP GLY THR VAL THR HIS TPO SEQRES 15 A 329 PHE CYS GLY THR ILE GLU TYR MET ALA PRO GLU ILE LEU SEQRES 16 A 329 MET ARG SER GLY HIS ASN ARG ALA VAL ASP TRP TRP SER SEQRES 17 A 329 LEU GLY ALA LEU MET TYR ASP MET LEU THR GLY ALA PRO SEQRES 18 A 329 PRO PHE THR GLY GLU ASN ARG LYS LYS THR ILE ASP LYS SEQRES 19 A 329 ILE LEU LYS CYS LYS LEU ASN LEU PRO PRO TYR LEU THR SEQRES 20 A 329 GLN GLU ALA ARG ASP LEU LEU LYS LYS LEU LEU LYS ARG SEQRES 21 A 329 ASN ALA ALA SER ARG LEU GLY ALA GLY PRO GLY ASP ALA SEQRES 22 A 329 GLY GLU VAL GLN ALA HIS PRO PHE PHE ARG HIS ILE ASN SEQRES 23 A 329 TRP GLU GLU LEU LEU ALA ARG LYS VAL GLU PRO PRO PHE SEQRES 24 A 329 LYS PRO LEU LEU GLN SER GLU GLU ASP VAL SER GLN PHE SEQRES 25 A 329 ASP SER LYS PHE THR ARG GLN THR PRO VAL ASP SER PRO SEQRES 26 A 329 ASP ASP SER THR MODRES 3WF8 TPO A 252 THR PHOSPHOTHREONINE HET TPO A 252 11 HET ZN A 401 1 HET F76 A 402 32 HET GOL A 403 6 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM F76 2-OXO-2-[(4-SULFAMOYLPHENYL)AMINO]ETHYL 7,8,9,10- HETNAM 2 F76 TETRAHYDRO-6H-CYCLOHEPTA[B]QUINOLINE-11-CARBOXYLATE HETNAM GOL GLYCEROL HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN ZN 2+ FORMUL 3 F76 C23 H23 N3 O5 S FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *321(H2 O) HELIX 1 1 ARG A 87 GLU A 89 5 3 HELIX 2 2 LYS A 127 VAL A 131 1 5 HELIX 3 3 ASN A 133 VAL A 150 1 18 HELIX 4 4 GLU A 179 GLY A 188 1 10 HELIX 5 5 MET A 191 LYS A 212 1 22 HELIX 6 6 LYS A 220 GLU A 222 5 3 HELIX 7 7 ALA A 261 MET A 266 1 6 HELIX 8 8 ARG A 272 GLY A 289 1 18 HELIX 9 9 ASN A 297 CYS A 308 1 12 HELIX 10 10 THR A 317 LEU A 328 1 12 HELIX 11 11 ASN A 331 ARG A 335 5 5 HELIX 12 12 ASP A 342 ALA A 348 1 7 HELIX 13 13 HIS A 349 ARG A 353 5 5 HELIX 14 14 ASN A 356 ALA A 362 1 7 SHEET 1 A 5 PHE A 91 LYS A 99 0 SHEET 2 A 5 GLY A 103 LYS A 110 -1 O GLN A 107 N LEU A 94 SHEET 3 A 5 ILE A 119 LYS A 126 -1 O VAL A 124 N LYS A 104 SHEET 4 A 5 LYS A 167 GLU A 173 -1 O LEU A 172 N ALA A 121 SHEET 5 A 5 LEU A 158 GLN A 163 -1 N TYR A 160 O ILE A 171 SHEET 1 B 2 ILE A 224 LEU A 226 0 SHEET 2 B 2 VAL A 232 LEU A 234 -1 O LYS A 233 N MET A 225 LINK C HIS A 251 N TPO A 252 1555 1555 1.33 LINK C TPO A 252 N PHE A 253 1555 1555 1.33 LINK ND1 HIS A 245 ZN ZN A 401 1555 1555 2.03 LINK ND1 HIS A 251 ZN ZN A 401 1555 1555 2.19 LINK SG CYS A 254 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 240 ZN ZN A 401 1555 1555 2.36 SITE 1 AC1 4 CYS A 240 HIS A 245 HIS A 251 CYS A 254 SITE 1 AC2 17 LEU A 97 LYS A 99 GLY A 100 GLY A 101 SITE 2 AC2 17 TYR A 102 GLY A 103 VAL A 105 ALA A 121 SITE 3 AC2 17 LEU A 125 GLU A 173 TYR A 174 LEU A 175 SITE 4 AC2 17 LEU A 239 CYS A 240 LYS A 241 HOH A 521 SITE 5 AC2 17 HOH A 791 SITE 1 AC3 9 GLU A 89 PHE A 91 GLU A 92 GLY A 344 SITE 2 AC3 9 GLN A 347 ALA A 348 TRP A 357 HOH A 517 SITE 3 AC3 9 HOH A 663 CRYST1 121.737 62.535 79.977 90.00 127.97 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008214 0.000000 0.006411 0.00000 SCALE2 0.000000 0.015991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015861 0.00000