PDB Short entry for 3WJL HEADER IMMUNE SYSTEM 11-OCT-13 3WJL TITLE CRYSTAL STRUCTURE OF IIB SELECTIVE FC VARIANT, FC(V12), IN COMPLEX TITLE 2 WITH FCGRIIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 216-445; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LOW AFFINITY IMMUNOGLOBULIN GAMMA FC REGION RECEPTOR II-C; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 45-217; COMPND 11 SYNONYM: IGG FC RECEPTOR II-C, CDW32, FC-GAMMA RII-C, FC-GAMMA-RIIC, COMPND 12 FCRII-C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: FCGR2C, CD32, FCG2, IGFR2; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293F KEYWDS RECEPTOR COMPLEX, FC RECEPTOR, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.KADONO,F.MIMOTO,H.KATADA,T.IGAWA,T.KURAMOCHI,M.MURAOKA,Y.WADA, AUTHOR 2 K.HARAYA,T.MIYAZAKI,K.HATTORI REVDAT 5 29-NOV-23 3WJL 1 REMARK HETSYN REVDAT 4 29-JUL-20 3WJL 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 20-JUN-18 3WJL 1 SOURCE REVDAT 2 26-NOV-14 3WJL 1 REMARK REVDAT 1 13-NOV-13 3WJL 0 JRNL AUTH F.MIMOTO,H.KATADA,S.KADONO,T.IGAWA,T.KURAMOCHI,M.MURAOKA, JRNL AUTH 2 Y.WADA,K.HARAYA,T.MIYAZAKI,K.HATTORI JRNL TITL ENGINEERED ANTIBODY FC VARIANT WITH SELECTIVELY ENHANCED FC JRNL TITL 2 GAMMA RIIB BINDING OVER BOTH FC GAMMA RIIAR131 AND FC GAMMA JRNL TITL 3 RIIAH131. JRNL REF PROTEIN ENG.DES.SEL. V. 26 589 2013 JRNL REFN ISSN 1741-0126 JRNL PMID 23744091 JRNL DOI 10.1093/PROTEIN/GZT022 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4502 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 224 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.90000 REMARK 3 B22 (A**2) : 1.80000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.563 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.338 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4870 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6688 ; 1.075 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 5.279 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;35.058 ;24.950 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 714 ;15.740 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 805 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3588 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2316 ; 2.194 ; 6.427 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2888 ; 3.784 ; 9.631 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2552 ; 2.337 ; 6.665 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000096416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28725 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 56.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.88600 REMARK 200 R SYM FOR SHELL (I) : 0.88600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.1M BIS-TRIS, 0.2M REMARK 280 POTASSIUM PHOSPHATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 78.35500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 130.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 78.35500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 130.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.43000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 78.35500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 130.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.43000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 78.35500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 130.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1116 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 216 REMARK 465 PRO A 217 REMARK 465 LYS A 218 REMARK 465 SER A 219 REMARK 465 SER A 220 REMARK 465 ASP A 221 REMARK 465 LYS A 222 REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 SER A 444 REMARK 465 PRO A 445 REMARK 465 GLU B 216 REMARK 465 PRO B 217 REMARK 465 LYS B 218 REMARK 465 SER B 219 REMARK 465 SER B 220 REMARK 465 ASP B 221 REMARK 465 LYS B 222 REMARK 465 THR B 223 REMARK 465 HIS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 ASP B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 PRO B 445 REMARK 465 ALA C 0 REMARK 465 ALA C 1 REMARK 465 PRO C 2 REMARK 465 GLY C 28 REMARK 465 THR C 29 REMARK 465 HIS C 30 REMARK 465 SER C 31 REMARK 465 PRO C 32 REMARK 465 GLU C 33 REMARK 465 SER C 34 REMARK 465 ASP C 35 REMARK 465 ALA C 171 REMARK 465 PRO C 172 REMARK 465 HIS C 173 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 246 CE NZ REMARK 470 ASP A 268 CG OD1 OD2 REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 LYS A 274 CD CE NZ REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 ARG A 292 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 GLN A 295 CG CD OE1 NE2 REMARK 470 TYR A 300 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 311 OE1 NE2 REMARK 470 LYS A 317 CD CE NZ REMARK 470 GLU A 318 CD OE1 OE2 REMARK 470 LYS A 320 NZ REMARK 470 LYS A 322 NZ REMARK 470 LYS A 326 CD CE NZ REMARK 470 LYS A 338 NZ REMARK 470 LYS A 340 CD CE NZ REMARK 470 LYS A 360 CE NZ REMARK 470 GLN A 419 CD OE1 NE2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 LYS B 288 CD CE NZ REMARK 470 LYS B 290 CG CD CE NZ REMARK 470 GLN B 311 CD OE1 NE2 REMARK 470 LYS B 320 CE NZ REMARK 470 LYS B 322 CD CE NZ REMARK 470 LYS B 326 CE NZ REMARK 470 LYS B 340 CG CD CE NZ REMARK 470 LYS B 439 CE NZ REMARK 470 LYS C 8 CG CD CE NZ REMARK 470 ARG C 27 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 38 CG CD OE1 NE2 REMARK 470 HIS C 49 CG ND1 CD2 CE1 NE2 REMARK 470 ASN C 61 CG OD1 ND2 REMARK 470 GLU C 65 CD OE1 OE2 REMARK 470 GLN C 72 CG CD OE1 NE2 REMARK 470 GLU C 96 CD OE1 OE2 REMARK 470 LYS C 111 CE NZ REMARK 470 LYS C 117 CD CE NZ REMARK 470 TYR C 157 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 163 CD CE NZ REMARK 470 GLN C 170 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 286 33.02 -88.32 REMARK 500 ASN A 297 -129.07 -89.88 REMARK 500 SER A 298 53.81 -145.76 REMARK 500 ASP B 280 -9.77 65.13 REMARK 500 ASN B 315 2.52 -66.97 REMARK 500 ASN B 434 6.39 56.16 REMARK 500 HIS B 435 -2.40 65.92 REMARK 500 GLN C 12 1.35 -68.75 REMARK 500 GLU C 19 -6.12 73.76 REMARK 500 SER C 132 1.22 -150.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WJJ RELATED DB: PDB DBREF 3WJL A 216 445 UNP P01857 IGHG1_HUMAN 99 328 DBREF 3WJL B 216 445 UNP P01857 IGHG1_HUMAN 99 328 DBREF 3WJL C 0 172 UNP P31995 FCG2C_HUMAN 45 217 SEQADV 3WJL SER A 220 UNP P01857 CYS 103 ENGINEERED MUTATION SEQADV 3WJL ASP A 233 UNP P01857 GLU 116 ENGINEERED MUTATION SEQADV 3WJL ASP A 237 UNP P01857 GLY 120 ENGINEERED MUTATION SEQADV 3WJL ASP A 238 UNP P01857 PRO 121 ENGINEERED MUTATION SEQADV 3WJL ASP A 268 UNP P01857 HIS 151 ENGINEERED MUTATION SEQADV 3WJL GLY A 271 UNP P01857 PRO 154 ENGINEERED MUTATION SEQADV 3WJL ARG A 330 UNP P01857 ALA 213 ENGINEERED MUTATION SEQADV 3WJL SER B 220 UNP P01857 CYS 103 ENGINEERED MUTATION SEQADV 3WJL ASP B 233 UNP P01857 GLU 116 ENGINEERED MUTATION SEQADV 3WJL ASP B 237 UNP P01857 GLY 120 ENGINEERED MUTATION SEQADV 3WJL ASP B 238 UNP P01857 PRO 121 ENGINEERED MUTATION SEQADV 3WJL ASP B 268 UNP P01857 HIS 151 ENGINEERED MUTATION SEQADV 3WJL GLY B 271 UNP P01857 PRO 154 ENGINEERED MUTATION SEQADV 3WJL ARG B 330 UNP P01857 ALA 213 ENGINEERED MUTATION SEQADV 3WJL HIS C 173 UNP P31995 EXPRESSION TAG SEQADV 3WJL HIS C 174 UNP P31995 EXPRESSION TAG SEQADV 3WJL HIS C 175 UNP P31995 EXPRESSION TAG SEQADV 3WJL HIS C 176 UNP P31995 EXPRESSION TAG SEQADV 3WJL HIS C 177 UNP P31995 EXPRESSION TAG SEQADV 3WJL HIS C 178 UNP P31995 EXPRESSION TAG SEQRES 1 A 230 GLU PRO LYS SER SER ASP LYS THR HIS THR CYS PRO PRO SEQRES 2 A 230 CYS PRO ALA PRO ASP LEU LEU GLY ASP ASP SER VAL PHE SEQRES 3 A 230 LEU PHE PRO PRO LYS PRO LYS ASP THR LEU MET ILE SER SEQRES 4 A 230 ARG THR PRO GLU VAL THR CYS VAL VAL VAL ASP VAL SER SEQRES 5 A 230 ASP GLU ASP GLY GLU VAL LYS PHE ASN TRP TYR VAL ASP SEQRES 6 A 230 GLY VAL GLU VAL HIS ASN ALA LYS THR LYS PRO ARG GLU SEQRES 7 A 230 GLU GLN TYR ASN SER THR TYR ARG VAL VAL SER VAL LEU SEQRES 8 A 230 THR VAL LEU HIS GLN ASP TRP LEU ASN GLY LYS GLU TYR SEQRES 9 A 230 LYS CYS LYS VAL SER ASN LYS ALA LEU PRO ARG PRO ILE SEQRES 10 A 230 GLU LYS THR ILE SER LYS ALA LYS GLY GLN PRO ARG GLU SEQRES 11 A 230 PRO GLN VAL TYR THR LEU PRO PRO SER ARG ASP GLU LEU SEQRES 12 A 230 THR LYS ASN GLN VAL SER LEU THR CYS LEU VAL LYS GLY SEQRES 13 A 230 PHE TYR PRO SER ASP ILE ALA VAL GLU TRP GLU SER ASN SEQRES 14 A 230 GLY GLN PRO GLU ASN ASN TYR LYS THR THR PRO PRO VAL SEQRES 15 A 230 LEU ASP SER ASP GLY SER PHE PHE LEU TYR SER LYS LEU SEQRES 16 A 230 THR VAL ASP LYS SER ARG TRP GLN GLN GLY ASN VAL PHE SEQRES 17 A 230 SER CYS SER VAL MET HIS GLU ALA LEU HIS ASN HIS TYR SEQRES 18 A 230 THR GLN LYS SER LEU SER LEU SER PRO SEQRES 1 B 230 GLU PRO LYS SER SER ASP LYS THR HIS THR CYS PRO PRO SEQRES 2 B 230 CYS PRO ALA PRO ASP LEU LEU GLY ASP ASP SER VAL PHE SEQRES 3 B 230 LEU PHE PRO PRO LYS PRO LYS ASP THR LEU MET ILE SER SEQRES 4 B 230 ARG THR PRO GLU VAL THR CYS VAL VAL VAL ASP VAL SER SEQRES 5 B 230 ASP GLU ASP GLY GLU VAL LYS PHE ASN TRP TYR VAL ASP SEQRES 6 B 230 GLY VAL GLU VAL HIS ASN ALA LYS THR LYS PRO ARG GLU SEQRES 7 B 230 GLU GLN TYR ASN SER THR TYR ARG VAL VAL SER VAL LEU SEQRES 8 B 230 THR VAL LEU HIS GLN ASP TRP LEU ASN GLY LYS GLU TYR SEQRES 9 B 230 LYS CYS LYS VAL SER ASN LYS ALA LEU PRO ARG PRO ILE SEQRES 10 B 230 GLU LYS THR ILE SER LYS ALA LYS GLY GLN PRO ARG GLU SEQRES 11 B 230 PRO GLN VAL TYR THR LEU PRO PRO SER ARG ASP GLU LEU SEQRES 12 B 230 THR LYS ASN GLN VAL SER LEU THR CYS LEU VAL LYS GLY SEQRES 13 B 230 PHE TYR PRO SER ASP ILE ALA VAL GLU TRP GLU SER ASN SEQRES 14 B 230 GLY GLN PRO GLU ASN ASN TYR LYS THR THR PRO PRO VAL SEQRES 15 B 230 LEU ASP SER ASP GLY SER PHE PHE LEU TYR SER LYS LEU SEQRES 16 B 230 THR VAL ASP LYS SER ARG TRP GLN GLN GLY ASN VAL PHE SEQRES 17 B 230 SER CYS SER VAL MET HIS GLU ALA LEU HIS ASN HIS TYR SEQRES 18 B 230 THR GLN LYS SER LEU SER LEU SER PRO SEQRES 1 C 179 ALA ALA PRO PRO LYS ALA VAL LEU LYS LEU GLU PRO GLN SEQRES 2 C 179 TRP ILE ASN VAL LEU GLN GLU ASP SER VAL THR LEU THR SEQRES 3 C 179 CYS ARG GLY THR HIS SER PRO GLU SER ASP SER ILE GLN SEQRES 4 C 179 TRP PHE HIS ASN GLY ASN LEU ILE PRO THR HIS THR GLN SEQRES 5 C 179 PRO SER TYR ARG PHE LYS ALA ASN ASN ASN ASP SER GLY SEQRES 6 C 179 GLU TYR THR CYS GLN THR GLY GLN THR SER LEU SER ASP SEQRES 7 C 179 PRO VAL HIS LEU THR VAL LEU SER GLU TRP LEU VAL LEU SEQRES 8 C 179 GLN THR PRO HIS LEU GLU PHE GLN GLU GLY GLU THR ILE SEQRES 9 C 179 VAL LEU ARG CYS HIS SER TRP LYS ASP LYS PRO LEU VAL SEQRES 10 C 179 LYS VAL THR PHE PHE GLN ASN GLY LYS SER LYS LYS PHE SEQRES 11 C 179 SER ARG SER ASP PRO ASN PHE SER ILE PRO GLN ALA ASN SEQRES 12 C 179 HIS SER HIS SER GLY ASP TYR HIS CYS THR GLY ASN ILE SEQRES 13 C 179 GLY TYR THR LEU TYR SER SER LYS PRO VAL THR ILE THR SEQRES 14 C 179 VAL GLN ALA PRO HIS HIS HIS HIS HIS HIS MODRES 3WJL ASN B 297 ASN GLYCOSYLATION SITE MODRES 3WJL ASN C 142 ASN GLYCOSYLATION SITE MODRES 3WJL ASN A 297 ASN GLYCOSYLATION SITE HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET GAL D 6 11 HET MAN D 7 11 HET NAG D 8 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET NAG E 5 14 HET GAL E 6 11 HET MAN E 7 11 HET NAG E 8 14 HET FUL E 9 10 HET NAG C1001 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 4 NAG 9(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 4(C6 H12 O6) FORMUL 4 GAL 2(C6 H12 O6) FORMUL 5 FUL C6 H12 O5 FORMUL 7 HOH *42(H2 O) HELIX 1 1 GLY A 236 ASP A 238 5 3 HELIX 2 2 LYS A 246 MET A 252 1 7 HELIX 3 3 LEU A 309 ASN A 315 1 7 HELIX 4 4 ARG A 355 LYS A 360 5 6 HELIX 5 5 LYS A 414 GLN A 419 1 6 HELIX 6 6 LEU A 432 ASN A 434 5 3 HELIX 7 7 LYS B 246 MET B 252 1 7 HELIX 8 8 SER B 267 GLY B 271 5 5 HELIX 9 9 LEU B 309 ASN B 315 1 7 HELIX 10 10 SER B 354 LYS B 360 5 7 HELIX 11 11 LYS B 414 GLN B 419 1 6 HELIX 12 12 LEU B 432 ASN B 434 5 3 HELIX 13 13 ASN C 59 SER C 63 5 5 HELIX 14 14 LYS C 111 LYS C 113 5 3 HELIX 15 15 ASN C 142 SER C 146 5 5 SHEET 1 A 4 VAL A 240 PHE A 243 0 SHEET 2 A 4 GLU A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 A 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 A 4 LYS A 288 LYS A 290 -1 N LYS A 288 O VAL A 305 SHEET 1 B 4 VAL A 282 VAL A 284 0 SHEET 2 B 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 B 4 TYR A 319 SER A 324 -1 O LYS A 322 N ASN A 276 SHEET 4 B 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 C 4 GLN A 347 LEU A 351 0 SHEET 2 C 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 C 4 PHE A 404 ASP A 413 -1 O PHE A 404 N PHE A 372 SHEET 4 C 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 D 4 GLN A 347 LEU A 351 0 SHEET 2 D 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 D 4 PHE A 404 ASP A 413 -1 O PHE A 404 N PHE A 372 SHEET 4 D 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 E 4 GLN A 386 PRO A 387 0 SHEET 2 E 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 E 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 E 4 TYR A 436 LEU A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 F 4 VAL B 240 PHE B 243 0 SHEET 2 F 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 F 4 TYR B 300 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 4 F 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 G 4 VAL B 240 PHE B 243 0 SHEET 2 G 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 G 4 TYR B 300 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 4 G 4 GLU B 293 GLU B 294 -1 N GLU B 293 O ARG B 301 SHEET 1 H 4 VAL B 282 VAL B 284 0 SHEET 2 H 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 H 4 TYR B 319 SER B 324 -1 O SER B 324 N LYS B 274 SHEET 4 H 4 ILE B 332 ILE B 336 -1 O ILE B 332 N VAL B 323 SHEET 1 I 4 GLN B 347 LEU B 351 0 SHEET 2 I 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 I 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 I 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 J 4 GLN B 347 LEU B 351 0 SHEET 2 J 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 J 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 J 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 K 4 GLN B 386 GLU B 388 0 SHEET 2 K 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 K 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 K 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SHEET 1 L 3 VAL C 6 LYS C 8 0 SHEET 2 L 3 SER C 21 ARG C 27 -1 O ARG C 27 N VAL C 6 SHEET 3 L 3 SER C 53 LYS C 57 -1 O PHE C 56 N VAL C 22 SHEET 1 M 5 ASN C 15 LEU C 17 0 SHEET 2 M 5 VAL C 79 LEU C 84 1 O LEU C 84 N VAL C 16 SHEET 3 M 5 GLY C 64 GLN C 69 -1 N GLY C 64 O LEU C 81 SHEET 4 M 5 GLN C 38 HIS C 41 -1 N PHE C 40 O THR C 67 SHEET 5 M 5 ASN C 44 ILE C 46 -1 O ILE C 46 N TRP C 39 SHEET 1 N 3 LEU C 88 GLN C 91 0 SHEET 2 N 3 ILE C 103 SER C 109 -1 O ARG C 106 N GLN C 91 SHEET 3 N 3 ASN C 135 ILE C 138 -1 O PHE C 136 N LEU C 105 SHEET 1 O 5 GLU C 96 GLN C 98 0 SHEET 2 O 5 VAL C 165 GLN C 170 1 O THR C 168 N PHE C 97 SHEET 3 O 5 GLY C 147 ILE C 155 -1 N GLY C 147 O ILE C 167 SHEET 4 O 5 VAL C 116 GLN C 122 -1 N VAL C 116 O ASN C 154 SHEET 5 O 5 LYS C 125 SER C 130 -1 O LYS C 127 N PHE C 120 SHEET 1 P 4 GLU C 96 GLN C 98 0 SHEET 2 P 4 VAL C 165 GLN C 170 1 O THR C 168 N PHE C 97 SHEET 3 P 4 GLY C 147 ILE C 155 -1 N GLY C 147 O ILE C 167 SHEET 4 P 4 THR C 158 SER C 161 -1 O TYR C 160 N GLY C 153 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.04 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.03 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.03 SSBOND 5 CYS C 26 CYS C 68 1555 1555 2.04 SSBOND 6 CYS C 107 CYS C 151 1555 1555 2.07 LINK ND2 ASN A 297 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 297 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN C 142 C1 NAG C1001 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 LINK O4 NAG D 5 C1 GAL D 6 1555 1555 1.45 LINK O2 MAN D 7 C1 NAG D 8 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O6 NAG E 1 C1 FUL E 9 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.43 LINK O3 BMA E 3 C1 MAN E 7 1555 1555 1.45 LINK O2 MAN E 4 C1 NAG E 5 1555 1555 1.44 LINK O4 NAG E 5 C1 GAL E 6 1555 1555 1.45 LINK O2 MAN E 7 C1 NAG E 8 1555 1555 1.46 CISPEP 1 TYR A 373 PRO A 374 0 -0.15 CISPEP 2 TYR B 373 PRO B 374 0 -4.35 CISPEP 3 GLU C 10 PRO C 11 0 -3.35 CRYST1 156.710 260.200 56.860 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006381 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017587 0.00000