PDB Short entry for 3ZGC HEADER TRANSCRIPTION 17-DEC-12 3ZGC TITLE CRYSTAL STRUCTURE OF THE KEAP1-NEH2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KELCH DOMAIN OF HUMAN KEAP1, RESIDUES 321-609; COMPND 5 SYNONYM: CYTOSOLIC INHIBITOR OF NRF2, INRF2, KELCH-LIKE PROTEIN 19; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR 2; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: RESIDUES 76-82; COMPND 12 SYNONYM: NF-E2-RELATED FACTOR 2, NFE2-RELATED FACTOR 2, HEBP1, COMPND 13 NUCLEAR FACTOR, ERYTHROID DERIVED 2, LIKE 2, NEH2-DERIVED PEPTIDE; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, PROTEIN-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HOERER,D.REINERT,K.OSTMANN,Y.HOEVELS,H.NAR REVDAT 3 20-DEC-23 3ZGC 1 REMARK REVDAT 2 20-JUN-18 3ZGC 1 REMARK LINK REVDAT 1 12-JUN-13 3ZGC 0 JRNL AUTH S.HORER,D.REINERT,K.OSTMANN,Y.HOEVELS,H.NAR JRNL TITL CRYSTAL-CONTACT ENGINEERING TO OBTAIN A CRYSTAL FORM OF THE JRNL TITL 2 KELCH DOMAIN OF HUMAN KEAP1 SUITABLE FOR LIGAND-SOAKING JRNL TITL 3 EXPERIMENTS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 592 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23722832 JRNL DOI 10.1107/S174430911301124X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3097 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4536 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2215 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4309 REMARK 3 BIN R VALUE (WORKING SET) : 0.2211 REMARK 3 BIN FREE R VALUE : 0.2275 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 227 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.41140 REMARK 3 B22 (A**2) : 3.63120 REMARK 3 B33 (A**2) : 0.78020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.239 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.140 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.131 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.118 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4562 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6202 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1498 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 102 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 702 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4562 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 564 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5310 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.68 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.16 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61950 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 76.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1U6D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.05150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.77050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.03200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.77050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.05150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.03200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 300 REMARK 465 GLY A 301 REMARK 465 SER A 302 REMARK 465 SER A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 GLY A 312 REMARK 465 LEU A 313 REMARK 465 VAL A 314 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 GLY A 317 REMARK 465 SER A 318 REMARK 465 HIS A 319 REMARK 465 MET A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 VAL A 324 REMARK 465 MET B 300 REMARK 465 GLY B 301 REMARK 465 SER B 302 REMARK 465 SER B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 SER B 310 REMARK 465 SER B 311 REMARK 465 GLY B 312 REMARK 465 LEU B 313 REMARK 465 VAL B 314 REMARK 465 PRO B 315 REMARK 465 ARG B 316 REMARK 465 GLY B 317 REMARK 465 SER B 318 REMARK 465 HIS B 319 REMARK 465 MET B 320 REMARK 465 ALA B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 VAL B 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY C 76 C GLU C 82 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 336 -40.47 74.62 REMARK 500 HIS A 575 -42.55 -140.61 REMARK 500 ARG B 336 -39.09 73.45 REMARK 500 THR B 481 -54.23 -120.04 REMARK 500 GLN B 528 -57.71 -124.41 REMARK 500 HIS B 575 -43.23 -141.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2199 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH C2003 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH C2004 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1614 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1615 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZGD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A KEAP1 MUTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 E540A E542A REMARK 999 CHAIN C IS CYCLIZED VIA GLYCINE 76 DBREF 3ZGC A 321 609 UNP Q14145 KEAP1_HUMAN 321 609 DBREF 3ZGC B 321 609 UNP Q14145 KEAP1_HUMAN 321 609 DBREF 3ZGC C 76 82 UNP Q16236 NF2L2_HUMAN 76 82 SEQADV 3ZGC MET A 300 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC GLY A 301 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER A 302 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER A 303 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS A 304 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS A 305 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS A 306 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS A 307 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS A 308 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS A 309 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER A 310 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER A 311 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC GLY A 312 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC LEU A 313 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC VAL A 314 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC PRO A 315 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC ARG A 316 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC GLY A 317 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER A 318 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS A 319 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC MET A 320 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC ALA A 540 UNP Q14145 GLU 540 ENGINEERED MUTATION SEQADV 3ZGC ALA A 542 UNP Q14145 GLU 542 ENGINEERED MUTATION SEQADV 3ZGC MET B 300 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC GLY B 301 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER B 302 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER B 303 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS B 304 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS B 305 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS B 306 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS B 307 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS B 308 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS B 309 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER B 310 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER B 311 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC GLY B 312 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC LEU B 313 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC VAL B 314 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC PRO B 315 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC ARG B 316 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC GLY B 317 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC SER B 318 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC HIS B 319 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC MET B 320 UNP Q14145 EXPRESSION TAG SEQADV 3ZGC ALA B 540 UNP Q14145 GLU 540 ENGINEERED MUTATION SEQADV 3ZGC ALA B 542 UNP Q14145 GLU 542 ENGINEERED MUTATION SEQADV 3ZGC GLY C 76 UNP Q16236 LEU 76 ENGINEERED MUTATION SEQRES 1 A 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 310 LEU VAL PRO ARG GLY SER HIS MET ALA PRO LYS VAL GLY SEQRES 3 A 310 ARG LEU ILE TYR THR ALA GLY GLY TYR PHE ARG GLN SER SEQRES 4 A 310 LEU SER TYR LEU GLU ALA TYR ASN PRO SER ASP GLY THR SEQRES 5 A 310 TRP LEU ARG LEU ALA ASP LEU GLN VAL PRO ARG SER GLY SEQRES 6 A 310 LEU ALA GLY CYS VAL VAL GLY GLY LEU LEU TYR ALA VAL SEQRES 7 A 310 GLY GLY ARG ASN ASN SER PRO ASP GLY ASN THR ASP SER SEQRES 8 A 310 SER ALA LEU ASP CYS TYR ASN PRO MET THR ASN GLN TRP SEQRES 9 A 310 SER PRO CYS ALA PRO MET SER VAL PRO ARG ASN ARG ILE SEQRES 10 A 310 GLY VAL GLY VAL ILE ASP GLY HIS ILE TYR ALA VAL GLY SEQRES 11 A 310 GLY SER HIS GLY CYS ILE HIS HIS ASN SER VAL GLU ARG SEQRES 12 A 310 TYR GLU PRO GLU ARG ASP GLU TRP HIS LEU VAL ALA PRO SEQRES 13 A 310 MET LEU THR ARG ARG ILE GLY VAL GLY VAL ALA VAL LEU SEQRES 14 A 310 ASN ARG LEU LEU TYR ALA VAL GLY GLY PHE ASP GLY THR SEQRES 15 A 310 ASN ARG LEU ASN SER ALA GLU CYS TYR TYR PRO GLU ARG SEQRES 16 A 310 ASN GLU TRP ARG MET ILE THR ALA MET ASN THR ILE ARG SEQRES 17 A 310 SER GLY ALA GLY VAL CYS VAL LEU HIS ASN CYS ILE TYR SEQRES 18 A 310 ALA ALA GLY GLY TYR ASP GLY GLN ASP GLN LEU ASN SER SEQRES 19 A 310 VAL GLU ARG TYR ASP VAL ALA THR ALA THR TRP THR PHE SEQRES 20 A 310 VAL ALA PRO MET LYS HIS ARG ARG SER ALA LEU GLY ILE SEQRES 21 A 310 THR VAL HIS GLN GLY ARG ILE TYR VAL LEU GLY GLY TYR SEQRES 22 A 310 ASP GLY HIS THR PHE LEU ASP SER VAL GLU CYS TYR ASP SEQRES 23 A 310 PRO ASP THR ASP THR TRP SER GLU VAL THR ARG MET THR SEQRES 24 A 310 SER GLY ARG SER GLY VAL GLY VAL ALA VAL THR SEQRES 1 B 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 310 LEU VAL PRO ARG GLY SER HIS MET ALA PRO LYS VAL GLY SEQRES 3 B 310 ARG LEU ILE TYR THR ALA GLY GLY TYR PHE ARG GLN SER SEQRES 4 B 310 LEU SER TYR LEU GLU ALA TYR ASN PRO SER ASP GLY THR SEQRES 5 B 310 TRP LEU ARG LEU ALA ASP LEU GLN VAL PRO ARG SER GLY SEQRES 6 B 310 LEU ALA GLY CYS VAL VAL GLY GLY LEU LEU TYR ALA VAL SEQRES 7 B 310 GLY GLY ARG ASN ASN SER PRO ASP GLY ASN THR ASP SER SEQRES 8 B 310 SER ALA LEU ASP CYS TYR ASN PRO MET THR ASN GLN TRP SEQRES 9 B 310 SER PRO CYS ALA PRO MET SER VAL PRO ARG ASN ARG ILE SEQRES 10 B 310 GLY VAL GLY VAL ILE ASP GLY HIS ILE TYR ALA VAL GLY SEQRES 11 B 310 GLY SER HIS GLY CYS ILE HIS HIS ASN SER VAL GLU ARG SEQRES 12 B 310 TYR GLU PRO GLU ARG ASP GLU TRP HIS LEU VAL ALA PRO SEQRES 13 B 310 MET LEU THR ARG ARG ILE GLY VAL GLY VAL ALA VAL LEU SEQRES 14 B 310 ASN ARG LEU LEU TYR ALA VAL GLY GLY PHE ASP GLY THR SEQRES 15 B 310 ASN ARG LEU ASN SER ALA GLU CYS TYR TYR PRO GLU ARG SEQRES 16 B 310 ASN GLU TRP ARG MET ILE THR ALA MET ASN THR ILE ARG SEQRES 17 B 310 SER GLY ALA GLY VAL CYS VAL LEU HIS ASN CYS ILE TYR SEQRES 18 B 310 ALA ALA GLY GLY TYR ASP GLY GLN ASP GLN LEU ASN SER SEQRES 19 B 310 VAL GLU ARG TYR ASP VAL ALA THR ALA THR TRP THR PHE SEQRES 20 B 310 VAL ALA PRO MET LYS HIS ARG ARG SER ALA LEU GLY ILE SEQRES 21 B 310 THR VAL HIS GLN GLY ARG ILE TYR VAL LEU GLY GLY TYR SEQRES 22 B 310 ASP GLY HIS THR PHE LEU ASP SER VAL GLU CYS TYR ASP SEQRES 23 B 310 PRO ASP THR ASP THR TRP SER GLU VAL THR ARG MET THR SEQRES 24 B 310 SER GLY ARG SER GLY VAL GLY VAL ALA VAL THR SEQRES 1 C 7 GLY ASP GLU GLU THR GLY GLU HET ACT A1610 4 HET ACT A1611 4 HET ACT A1612 4 HET ACT A1613 4 HET ACT B1610 4 HET ACT B1611 4 HET ACT B1612 4 HET ACT B1613 4 HET ACT B1614 4 HET ACT B1615 4 HETNAM ACT ACETATE ION FORMUL 4 ACT 10(C2 H3 O2 1-) FORMUL 14 HOH *550(H2 O) SHEET 1 AA 4 THR A 351 ARG A 354 0 SHEET 2 AA 4 LEU A 342 ASN A 346 -1 O ALA A 344 N LEU A 353 SHEET 3 AA 4 LEU A 327 ALA A 331 -1 O ILE A 328 N TYR A 345 SHEET 4 AA 4 GLY A 605 THR A 609 -1 O GLY A 605 N ALA A 331 SHEET 1 AB 4 ALA A 366 VAL A 370 0 SHEET 2 AB 4 LEU A 373 VAL A 377 -1 O LEU A 373 N VAL A 370 SHEET 3 AB 4 LEU A 393 ASN A 397 -1 O ASP A 394 N ALA A 376 SHEET 4 AB 4 GLN A 402 PRO A 405 -1 O GLN A 402 N ASN A 397 SHEET 1 AC 2 ARG A 380 SER A 383 0 SHEET 2 AC 2 GLY A 386 ASP A 389 -1 O GLY A 386 N SER A 383 SHEET 1 AD 4 GLY A 417 ILE A 421 0 SHEET 2 AD 4 HIS A 424 VAL A 428 -1 O HIS A 424 N ILE A 421 SHEET 3 AD 4 VAL A 440 GLU A 444 -1 O GLU A 441 N ALA A 427 SHEET 4 AD 4 GLU A 449 LEU A 452 -1 O GLU A 449 N GLU A 444 SHEET 1 AE 2 SER A 431 HIS A 432 0 SHEET 2 AE 2 ILE A 435 HIS A 436 -1 O ILE A 435 N HIS A 432 SHEET 1 AF 4 GLY A 464 LEU A 468 0 SHEET 2 AF 4 LEU A 471 PHE A 478 -1 O LEU A 471 N LEU A 468 SHEET 3 AF 4 ARG A 483 TYR A 491 -1 N LEU A 484 O GLY A 477 SHEET 4 AF 4 GLU A 496 MET A 499 -1 O GLU A 496 N TYR A 491 SHEET 1 AG 4 GLY A 511 LEU A 515 0 SHEET 2 AG 4 CYS A 518 ALA A 522 -1 O CYS A 518 N LEU A 515 SHEET 3 AG 4 VAL A 534 ASP A 538 -1 O GLU A 535 N ALA A 521 SHEET 4 AG 4 THR A 543 PHE A 546 -1 O THR A 543 N ASP A 538 SHEET 1 AH 4 GLY A 558 HIS A 562 0 SHEET 2 AH 4 ARG A 565 LEU A 569 -1 O ARG A 565 N HIS A 562 SHEET 3 AH 4 SER A 580 ASP A 585 -1 O GLU A 582 N VAL A 568 SHEET 4 AH 4 THR A 590 ARG A 596 -1 O THR A 590 N ASP A 585 SHEET 1 BA 4 THR B 351 ARG B 354 0 SHEET 2 BA 4 LEU B 342 ASN B 346 -1 O ALA B 344 N LEU B 353 SHEET 3 BA 4 LEU B 327 ALA B 331 -1 O ILE B 328 N TYR B 345 SHEET 4 BA 4 GLY B 605 THR B 609 -1 O GLY B 605 N ALA B 331 SHEET 1 BB 4 ALA B 366 VAL B 370 0 SHEET 2 BB 4 LEU B 373 VAL B 377 -1 O LEU B 373 N VAL B 370 SHEET 3 BB 4 LEU B 393 ASN B 397 -1 O ASP B 394 N ALA B 376 SHEET 4 BB 4 GLN B 402 PRO B 405 -1 O GLN B 402 N ASN B 397 SHEET 1 BC 2 ARG B 380 SER B 383 0 SHEET 2 BC 2 GLY B 386 ASP B 389 -1 O GLY B 386 N SER B 383 SHEET 1 BD 4 GLY B 417 ILE B 421 0 SHEET 2 BD 4 HIS B 424 VAL B 428 -1 O HIS B 424 N ILE B 421 SHEET 3 BD 4 VAL B 440 GLU B 444 -1 O GLU B 441 N ALA B 427 SHEET 4 BD 4 GLU B 449 LEU B 452 -1 O GLU B 449 N GLU B 444 SHEET 1 BE 2 SER B 431 HIS B 432 0 SHEET 2 BE 2 ILE B 435 HIS B 436 -1 O ILE B 435 N HIS B 432 SHEET 1 BF 4 GLY B 464 LEU B 468 0 SHEET 2 BF 4 LEU B 471 PHE B 478 -1 O LEU B 471 N LEU B 468 SHEET 3 BF 4 ARG B 483 TYR B 491 -1 N LEU B 484 O GLY B 477 SHEET 4 BF 4 GLU B 496 MET B 499 -1 O GLU B 496 N TYR B 491 SHEET 1 BG 4 GLY B 511 LEU B 515 0 SHEET 2 BG 4 CYS B 518 ALA B 522 -1 O CYS B 518 N LEU B 515 SHEET 3 BG 4 VAL B 534 ASP B 538 -1 O GLU B 535 N ALA B 521 SHEET 4 BG 4 THR B 543 VAL B 547 -1 O THR B 543 N ASP B 538 SHEET 1 BH 4 GLY B 558 HIS B 562 0 SHEET 2 BH 4 ARG B 565 LEU B 569 -1 O ARG B 565 N HIS B 562 SHEET 3 BH 4 SER B 580 ASP B 585 -1 O GLU B 582 N VAL B 568 SHEET 4 BH 4 THR B 590 ARG B 596 -1 O THR B 590 N ASP B 585 SSBOND 1 CYS A 434 CYS B 434 1555 1555 2.51 SITE 1 AC1 5 TYR B 491 PRO B 492 GLU B 493 ARG B 494 SITE 2 AC1 5 HOH B2157 SITE 1 AC2 5 TYR A 491 PRO A 492 GLU A 493 ARG A 494 SITE 2 AC2 5 HOH A2170 SITE 1 AC3 6 ASP A 385 GLY A 386 HOH A2064 PHE B 478 SITE 2 AC3 6 ARG B 483 SER B 508 SITE 1 AC4 5 MET A 399 TYR A 473 TYR A 491 TYR A 537 SITE 2 AC4 5 HOH A2235 SITE 1 AC5 4 MET B 399 TYR B 473 TYR B 491 TYR B 537 SITE 1 AC6 5 VAL A 411 HIS A 432 ILE A 435 HIS A 437 SITE 2 AC6 5 HOH A2113 SITE 1 AC7 6 PRO A 384 TYR B 334 SER B 363 ARG B 380 SITE 2 AC7 6 ASN B 382 ACT B1615 SITE 1 AC8 5 CYS A 434 ILE A 435 HIS A 436 ARG A 459 SITE 2 AC8 5 HOH A2152 SITE 1 AC9 3 VAL B 411 HIS B 432 HIS B 437 SITE 1 BC1 7 PRO A 384 ARG B 415 ALA B 556 SER B 602 SITE 2 BC1 7 GLY B 603 ACT B1613 HOH B2035 CRYST1 76.103 76.064 207.541 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004818 0.00000 MTRIX1 1 0.001113 -0.813100 -0.582100 15.50000 1 MTRIX2 1 -1.000000 -0.003351 0.002768 -2.31700 1 MTRIX3 1 -0.004201 0.582100 -0.813100 40.87000 1