PDB Short entry for 3ZNF
HEADER    ZINC FINGER DNA BINDING DOMAIN          09-JUL-90   3ZNF              
TITLE     HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF A SINGLE ZINC FINGER   
TITLE    2 FROM A HUMAN ENHANCER BINDING PROTEIN IN SOLUTION                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ZINC FINGER;                                               
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606                                                 
KEYWDS    ZINC FINGER DNA BINDING DOMAIN                                        
EXPDTA    SOLUTION NMR                                                          
AUTHOR    A.M.GRONENBORN,G.M.CLORE,J.G.OMICHINSKI                               
REVDAT   3   16-MAR-22 3ZNF    1       REMARK SEQADV LINK                       
REVDAT   2   24-FEB-09 3ZNF    1       VERSN                                    
REVDAT   1   15-JAN-92 3ZNF    0                                                
JRNL        AUTH   J.G.OMICHINSKI,G.M.CLORE,E.APPELLA,K.SAKAGUCHI,              
JRNL        AUTH 2 A.M.GRONENBORN                                               
JRNL        TITL   HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF A SINGLE ZINC 
JRNL        TITL 2 FINGER FROM A HUMAN ENHANCER BINDING PROTEIN IN SOLUTION.    
JRNL        REF    BIOCHEMISTRY                  V.  29  9324 1990              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   2248949                                                      
JRNL        DOI    10.1021/BI00492A004                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NULL                                                 
REMARK   3   AUTHORS     : NULL                                                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  THE 3D STRUCTURE OF THE ZINC FINGER IN SOLUTION                     
REMARK   3   BY NMR IS BASED ON 487 APPROXIMATE INTERPROTON DISTANCE            
REMARK   3   RESTRAINTS AND 63 TORSION ANGLE RESTRAINTS DERIVED FROM            
REMARK   3   NOE AND COUPLING CONSTANT MEASUREMENTS.  THE STRUCTURES            
REMARK   3   ARE CALCULATED USING THE HYBRID METRIC MATRIX DISTANCE             
REMARK   3   GEOMETRY-DYNAMICAL SIMULATED ANNEALING METHOD DESCRIBED            
REMARK   3   BY M. NILGES, G. M. CLORE, AND A. M. GRONENBORN (1988)             
REMARK   3   FEBS LETT 229, 317.                                                
REMARK   3                                                                      
REMARK   3  THIS ENTRY REPRESENTS THE RESTRAINED MINIMIZED AVERAGE              
REMARK   3  STRUCTURE (SA)$R DERIVED BY RESTRAINED LEAST SQUARE                 
REMARK   3  REFINEMENT OF THE MEAN STRUCTURE OBTAINED BY AVERAGING THE          
REMARK   3  COORDINATES OF THE FINAL 41 SA STRUCTURES BEST FITTED TO            
REMARK   3  EACH OTHER.  THE ENTIRE SET OF 41 MODELS CAN BE FOUND IN            
REMARK   3  PDB ENTRY 4ZNF.                                                     
REMARK   3                                                                      
REMARK   3  THE FIELD IN THIS ENTRY THAT OCCUPIES COLUMNS 61 - 66               
REMARK   3  (RESERVED FOR B-VALUES IN X-RAY CRYSTALLOGRAPHIC ENTRIES)           
REMARK   3  GIVES THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SA          
REMARK   3  STRUCTURES AND THE MEAN STRUCTURE.                                  
REMARK   4                                                                      
REMARK   4 3ZNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.                                
REMARK 100 THE DEPOSITION ID IS D_1000179200.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : NULL                               
REMARK 210  PH                             : NULL                               
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : NULL                               
REMARK 210  SAMPLE CONTENTS                : NULL                               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : NULL                               
REMARK 210  SPECTROMETER FIELD STRENGTH    : NULL                               
REMARK 210  SPECTROMETER MODEL             : NULL                               
REMARK 210  SPECTROMETER MANUFACTURER      : NULL                               
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : NULL                               
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : NULL                               
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : NULL                               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    HIS A   4   CG    HIS A   4   ND1    -0.116                       
REMARK 500    HIS A  27   CG    HIS A  27   ND1    -0.097                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO A   2        7.99    -63.19                                   
REMARK 500    CYS A   5      162.84    -45.11                                   
REMARK 500    TYR A   7      -76.00   -160.62                                   
REMARK 500    CYS A   8     -160.70    -59.19                                   
REMARK 500    PHE A  10       98.43    -67.63                                   
REMARK 500    SER A  24      175.05    -50.15                                   
REMARK 500    LYS A  25       29.47    -76.94                                   
REMARK 500    ALA A  26      -92.79    -46.94                                   
REMARK 500    HIS A  27       75.19   -176.11                                   
REMARK 500    SER A  28       47.11   -165.44                                   
REMARK 500    LYS A  29       39.34    -84.90                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    ARG A   1         0.30    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A  31  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A   5   SG                                                     
REMARK 620 2 CYS A   8   SG  111.8                                              
REMARK 620 3 HIS A  21   NE2 110.8 110.5                                        
REMARK 620 4 HIS A  27   NE2 111.3  98.4 113.5                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 31                   
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4ZNF   RELATED DB: PDB                                   
DBREF  3ZNF A    1    30  UNP    P15822   ZEP1_HUMAN    2113   2142             
SEQADV 3ZNF SER A    6  UNP  P15822    THR  2118 CONFLICT                       
SEQRES   1 A   30  ARG PRO TYR HIS CYS SER TYR CYS ASN PHE SER PHE LYS          
SEQRES   2 A   30  THR LYS GLY ASN LEU THR LYS HIS MET LYS SER LYS ALA          
SEQRES   3 A   30  HIS SER LYS LYS                                              
HET     ZN  A  31       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    ZN 2+                                                        
HELIX    1   1 THR A   14  SER A   24  1                                  11    
LINK         SG  CYS A   5                ZN    ZN A  31     1555   1555  2.30  
LINK         SG  CYS A   8                ZN    ZN A  31     1555   1555  2.30  
LINK         NE2 HIS A  21                ZN    ZN A  31     1555   1555  2.00  
LINK         NE2 HIS A  27                ZN    ZN A  31     1555   1555  2.02  
SITE     1 AC1  4 CYS A   5  CYS A   8  HIS A  21  HIS A  27                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000