PDB Short entry for 3ZP0 HEADER VIRAL PROTEIN 26-FEB-13 3ZP0 TITLE INFLUENZA VIRUS (VN1194) H5 HA WITH LSTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: HA1 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-342; COMPND 5 SYNONYM: H5 HA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEMAGGLUTININ; COMPND 9 CHAIN: F; COMPND 10 FRAGMENT: HA2 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 347-512; COMPND 11 SYNONYM: H5 HA; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: CHICKEN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9031; SOURCE 7 EXPRESSION_SYSTEM_ORGAN: EGG; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 10 ORGANISM_TAXID: 11320; SOURCE 11 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: CHICKEN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9031; SOURCE 14 EXPRESSION_SYSTEM_ORGAN: EGG KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,D.J.STEVENS,S.J.GAMBLIN,J.J.SKEHEL REVDAT 3 29-JUL-20 3ZP0 1 COMPND JRNL REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 20-NOV-13 3ZP0 1 JRNL REVDAT 1 02-OCT-13 3ZP0 0 JRNL AUTH M.CRUSAT,J.LIU,A.S.PALMA,R.A.CHILDS,Y.LIU,S.A.WHARTON, JRNL AUTH 2 Y.P.LIN,P.J.COOMBS,S.R.MARTIN,M.MATROSOVICH,Z.CHEN, JRNL AUTH 3 D.J.STEVENS,V.M.HIEN,T.T.THANH,L.N.T.NHU,L.A.NGUYET,D.Q.HA, JRNL AUTH 4 H.R.VAN DOORN,T.T.HIEN,H.S.CONRADT,M.KISO,S.J.GAMBLIN, JRNL AUTH 5 W.CHAI,J.J.SKEHEL,A.J.HAY,J.FARRAR,M.D.DE JONG,T.FEIZI JRNL TITL CHANGES IN THE HEMAGGLUTININ OF H5N1 VIRUSES DURING HUMAN JRNL TITL 2 INFECTION - INFLUENCE ON RECEPTOR BINDING. JRNL REF VIROLOGY V. 447 326 2013 JRNL REFN ISSN 0042-6822 JRNL PMID 24050651 JRNL DOI 10.1016/J.VIROL.2013.08.010 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 26325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1401 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 328 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 15.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.404 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.334 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4015 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5437 ; 1.063 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 5.706 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;38.731 ;25.202 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;16.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3042 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2382 ; 0.452 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3846 ; 0.887 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1633 ; 1.133 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1591 ; 1.995 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 5 E 325 REMARK 3 ORIGIN FOR THE GROUP (A): -32.1440 20.0180 3.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.2001 REMARK 3 T33: 0.1285 T12: 0.1237 REMARK 3 T13: 0.1087 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 0.3223 L22: 0.0827 REMARK 3 L33: 1.2971 L12: 0.1166 REMARK 3 L13: -0.0532 L23: -0.1916 REMARK 3 S TENSOR REMARK 3 S11: -0.1307 S12: 0.0370 S13: -0.0210 REMARK 3 S21: -0.1028 S22: -0.0453 S23: -0.0696 REMARK 3 S31: 0.3096 S32: 0.4465 S33: 0.1760 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 160 REMARK 3 ORIGIN FOR THE GROUP (A): -39.8960 23.8320 52.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.1093 REMARK 3 T33: 0.2121 T12: 0.0314 REMARK 3 T13: 0.0310 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.5743 L22: 0.1320 REMARK 3 L33: 3.6067 L12: -0.2446 REMARK 3 L13: 0.8490 L23: -0.3303 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.0789 S13: -0.0037 REMARK 3 S21: 0.0278 S22: 0.0111 S23: -0.0181 REMARK 3 S31: 0.1515 S32: 0.0202 S33: 0.1061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES WITH TLS ADDED REMARK 4 REMARK 4 3ZP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9715 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.61000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.21970 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 149.92667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.61000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.21970 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 149.92667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.61000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.21970 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 149.92667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.61000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.21970 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 149.92667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.61000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.21970 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 149.92667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.61000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.21970 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 149.92667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.43939 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 299.85333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.43939 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 299.85333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.43939 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 299.85333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.43939 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 299.85333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.43939 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 299.85333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.43939 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 299.85333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.61000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 87.65909 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -101.22000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F2045 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E -11 REMARK 465 GLU E -10 REMARK 465 LYS E -9 REMARK 465 ILE E -8 REMARK 465 VAL E -7 REMARK 465 LEU E -6 REMARK 465 LEU E -5 REMARK 465 PHE E -4 REMARK 465 ALA E -3 REMARK 465 ILE E -2 REMARK 465 VAL E -1 REMARK 465 SER E 0 REMARK 465 LEU E 1 REMARK 465 VAL E 2 REMARK 465 LYS E 3 REMARK 465 SER E 4 REMARK 465 GLN E 326 REMARK 465 ARG E 327 REMARK 465 GLU E 328 REMARK 465 TYR F 159 REMARK 465 PRO F 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 ILE F 77 O HOH F 2038 1.13 REMARK 500 O ARG E 57 O HOH E 2044 1.41 REMARK 500 NE ARG E 57 O HOH E 2046 1.82 REMARK 500 CA SER E 324 O HOH E 2108 2.00 REMARK 500 OD1 ASN E 172 NZ LYS E 259 2.10 REMARK 500 O SER E 159 OE1 GLN E 196 2.12 REMARK 500 OG SER E 60 OD1 ASP E 92 2.14 REMARK 500 SG CYS E 306 O HOH E 2101 2.15 REMARK 500 CG1 ILE F 77 O HOH F 2038 2.17 REMARK 500 SD MET E 293 O HOH E 2032 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG E 57 -125.16 62.21 REMARK 500 SER E 146 -160.78 -122.50 REMARK 500 TRP E 153 78.15 -66.82 REMARK 500 ASN E 170 90.79 -67.00 REMARK 500 GLN E 196 -60.86 72.24 REMARK 500 THR E 206 -154.61 -127.85 REMARK 500 ASP E 265 77.57 98.36 REMARK 500 ALA F 5 -72.63 -87.41 REMARK 500 ARG F 127 -130.22 58.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E2110 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH E2111 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH E2112 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH E2113 DISTANCE = 10.88 ANGSTROMS REMARK 525 HOH F2074 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH F2075 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH F2076 DISTANCE = 7.46 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GAL A 1 REMARK 610 NAG F 1160 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZP1 RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 HA WITH LSTC REMARK 900 RELATED ID: 3ZP2 RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 HA A138V MUTANT WITH LSTA REMARK 900 RELATED ID: 3ZP3 RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 HA A138V MUTANT WITH LSTC REMARK 900 RELATED ID: 3ZP6 RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 E190D MUTANT HA WITH LSTC REMARK 900 RELATED ID: 3ZPA RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 I155F MUTANT HA REMARK 900 RELATED ID: 3ZPB RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 E190D MUTANT HA WITH LSTA DBREF 3ZP0 E -11 328 UNP Q6DQ34 Q6DQ34_9INFA 1 340 DBREF 3ZP0 F 1 160 UNP Q6DQ34 Q6DQ34_9INFA 347 506 SEQADV 3ZP0 LYS E 40 UNP Q6DQ34 THR 52 CONFLICT SEQRES 1 E 340 MET GLU LYS ILE VAL LEU LEU PHE ALA ILE VAL SER LEU SEQRES 2 E 340 VAL LYS SER ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN SEQRES 3 E 340 ASN SER THR GLU GLN VAL ASP THR ILE MET GLU LYS ASN SEQRES 4 E 340 VAL THR VAL THR HIS ALA GLN ASP ILE LEU GLU LYS LYS SEQRES 5 E 340 HIS ASN GLY LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO SEQRES 6 E 340 LEU ILE LEU ARG ASP CYS SER VAL ALA GLY TRP LEU LEU SEQRES 7 E 340 GLY ASN PRO MET CYS ASP GLU PHE ILE ASN VAL PRO GLU SEQRES 8 E 340 TRP SER TYR ILE VAL GLU LYS ALA ASN PRO VAL ASN ASP SEQRES 9 E 340 LEU CYS TYR PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU SEQRES 10 E 340 LYS HIS LEU LEU SER ARG ILE ASN HIS PHE GLU LYS ILE SEQRES 11 E 340 GLN ILE ILE PRO LYS SER SER TRP SER SER HIS GLU ALA SEQRES 12 E 340 SER LEU GLY VAL SER SER ALA CYS PRO TYR GLN GLY LYS SEQRES 13 E 340 SER SER PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS SEQRES 14 E 340 ASN SER THR TYR PRO THR ILE LYS ARG SER TYR ASN ASN SEQRES 15 E 340 THR ASN GLN GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS SEQRES 16 E 340 HIS PRO ASN ASP ALA ALA GLU GLN THR LYS LEU TYR GLN SEQRES 17 E 340 ASN PRO THR THR TYR ILE SER VAL GLY THR SER THR LEU SEQRES 18 E 340 ASN GLN ARG LEU VAL PRO ARG ILE ALA THR ARG SER LYS SEQRES 19 E 340 VAL ASN GLY GLN SER GLY ARG MET GLU PHE PHE TRP THR SEQRES 20 E 340 ILE LEU LYS PRO ASN ASP ALA ILE ASN PHE GLU SER ASN SEQRES 21 E 340 GLY ASN PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL SEQRES 22 E 340 LYS LYS GLY ASP SER THR ILE MET LYS SER GLU LEU GLU SEQRES 23 E 340 TYR GLY ASN CYS ASN THR LYS CYS GLN THR PRO MET GLY SEQRES 24 E 340 ALA ILE ASN SER SER MET PRO PHE HIS ASN ILE HIS PRO SEQRES 25 E 340 LEU THR ILE GLY GLU CYS PRO LYS TYR VAL LYS SER ASN SEQRES 26 E 340 ARG LEU VAL LEU ALA THR GLY LEU ARG ASN SER PRO GLN SEQRES 27 E 340 ARG GLU SEQRES 1 F 160 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 F 160 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 F 160 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 F 160 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 F 160 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 F 160 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 F 160 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 F 160 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 F 160 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 F 160 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 F 160 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 F 160 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 F 160 TYR ASP TYR PRO HET GAL A 1 11 HET SIA A 2 20 HET NAG F1160 14 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *187(H2 O) HELIX 1 1 SER E 60 GLY E 67 1 8 HELIX 2 2 ASN E 68 ILE E 75 5 8 HELIX 3 3 ASP E 101 SER E 110 1 10 HELIX 4 4 PRO E 122 TRP E 126 5 5 HELIX 5 5 ASP E 187 GLN E 196 1 10 HELIX 6 6 ASP F 37 MET F 59 1 23 HELIX 7 7 GLU F 74 ARG F 127 1 54 HELIX 8 8 ASP F 145 ASN F 154 1 10 SHEET 1 FA 5 GLY F 31 ALA F 36 0 SHEET 2 FA 5 TYR F 22 ASN F 28 -1 O TYR F 24 N ALA F 35 SHEET 3 FA 5 GLN E 6 TYR E 11 -1 O GLN E 6 N SER F 27 SHEET 4 FA 5 CYS F 137 PHE F 140 -1 O PHE F 138 N ILE E 7 SHEET 5 FA 5 ALA F 130 GLU F 132 -1 O LYS F 131 N GLU F 139 SHEET 1 EA 2 GLN E 19 VAL E 20 0 SHEET 2 EA 2 VAL E 28 THR E 29 -1 O VAL E 28 N VAL E 20 SHEET 1 EB 2 ALA E 33 ASP E 35 0 SHEET 2 EB 2 VAL E 316 ALA E 318 -1 O LEU E 317 N GLN E 34 SHEET 1 EC 3 LEU E 37 GLU E 38 0 SHEET 2 EC 3 PHE E 295 HIS E 296 1 O PHE E 295 N GLU E 38 SHEET 3 EC 3 LYS E 308 TYR E 309 1 O LYS E 308 N HIS E 296 SHEET 1 ED 2 LEU E 45 LEU E 48 0 SHEET 2 ED 2 TYR E 275 THR E 280 1 N GLY E 276 O LEU E 45 SHEET 1 EE 2 LEU E 54 ARG E 57 0 SHEET 2 EE 2 ILE E 83 GLU E 85 1 O VAL E 84 N LEU E 56 SHEET 1 EF 5 GLY E 97 PHE E 99 0 SHEET 2 EF 5 ARG E 229 LEU E 237 1 O MET E 230 N ASP E 98 SHEET 3 EF 5 LEU E 176 HIS E 184 -1 O LEU E 176 N LEU E 237 SHEET 4 EF 5 PHE E 251 PRO E 254 -1 O ILE E 252 N GLY E 181 SHEET 5 EF 5 VAL E 151 TRP E 153 -1 O VAL E 152 N ALA E 253 SHEET 1 EG 5 GLY E 97 PHE E 99 0 SHEET 2 EG 5 ARG E 229 LEU E 237 1 O MET E 230 N ASP E 98 SHEET 3 EG 5 LEU E 176 HIS E 184 -1 O LEU E 176 N LEU E 237 SHEET 4 EG 5 TYR E 256 LYS E 262 -1 O TYR E 258 N LEU E 177 SHEET 5 EG 5 HIS E 114 GLN E 119 -1 O HIS E 114 N LYS E 262 SHEET 1 EH 2 HIS E 129 GLU E 130 0 SHEET 2 EH 2 ILE E 155 LYS E 156 -1 O ILE E 155 N GLU E 130 SHEET 1 EI 2 SER E 136 TYR E 141 0 SHEET 2 EI 2 LYS E 144 SER E 146 -1 O LYS E 144 N TYR E 141 SHEET 1 EJ 4 ILE E 164 ASN E 169 0 SHEET 2 EJ 4 ALA E 242 SER E 247 -1 O ILE E 243 N TYR E 168 SHEET 3 EJ 4 ILE E 202 GLY E 205 -1 O SER E 203 N GLU E 246 SHEET 4 EJ 4 ASN E 210 LEU E 213 -1 O GLN E 211 N VAL E 204 SHEET 1 EK 3 GLY E 287 ALA E 288 0 SHEET 2 EK 3 CYS E 282 THR E 284 -1 O THR E 284 N GLY E 287 SHEET 3 EK 3 ILE E 303 GLY E 304 -1 O ILE E 303 N GLN E 283 SSBOND 1 CYS E 8 CYS F 137 1555 1555 2.07 SSBOND 2 CYS E 46 CYS E 278 1555 1555 2.05 SSBOND 3 CYS E 59 CYS E 71 1555 1555 1.75 SSBOND 4 CYS E 94 CYS E 139 1555 1555 2.07 SSBOND 5 CYS E 282 CYS E 306 1555 1555 2.06 SSBOND 6 CYS F 144 CYS F 148 1555 1555 2.06 LINK O3 GAL A 1 C2 SIA A 2 1555 1555 1.44 CISPEP 1 LYS E 263 GLY E 264 0 8.70 CRYST1 101.220 101.220 449.780 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009879 0.005704 0.000000 0.00000 SCALE2 0.000000 0.011408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002223 0.00000