PDB Short entry for 3ZW5 HEADER LYASE 28-JUL-11 3ZW5 TITLE CRYSTAL STRUCTURE OF THE HUMAN GLYOXALASE DOMAIN-CONTAINING PROTEIN 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXALASE DOMAIN-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 22-145; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PNIC28-BSA4 KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.C.MUNIZ,W.KIYANI,S.FROESE,M.VOLLMAR,F.VON DELFT,N.BURGESS-BROWN, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,W.W.YUE REVDAT 2 24-JAN-18 3ZW5 1 JRNL REVDAT 1 10-AUG-11 3ZW5 0 JRNL AUTH J.R.C.MUNIZ,W.KIYANI,M.VOLLMAR,F.VON DELFT,N.BURGESS-BROWN, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,W.W.YUE JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN GLYOXALASE DOMAIN-CONTAINING JRNL TITL 2 PROTEIN 5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1758 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2756 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1991 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2626 REMARK 3 BIN R VALUE (WORKING SET) : 0.1983 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.72 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.14270 REMARK 3 B22 (A**2) : 0.77660 REMARK 3 B33 (A**2) : 2.36610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.172 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2147 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2910 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1045 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 50 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 316 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2147 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 288 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2730 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.90 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 14:35) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4918 62.8092 12.7642 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: -0.0713 REMARK 3 T33: -0.0183 T12: -0.0177 REMARK 3 T13: 0.0230 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.6019 L22: 1.4558 REMARK 3 L33: 0.5420 L12: 1.6411 REMARK 3 L13: 0.3337 L23: 0.2584 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.0036 S13: 0.0639 REMARK 3 S21: -0.0154 S22: -0.0397 S23: -0.0120 REMARK 3 S31: -0.1003 S32: -0.0654 S33: -0.0210 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 36:57) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3010 55.6619 7.6305 REMARK 3 T TENSOR REMARK 3 T11: -0.0274 T22: 0.0367 REMARK 3 T33: -0.0103 T12: -0.0031 REMARK 3 T13: -0.0583 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.0096 L22: 4.2390 REMARK 3 L33: 4.2089 L12: 0.7140 REMARK 3 L13: -1.4781 L23: 0.8480 REMARK 3 S TENSOR REMARK 3 S11: -0.1092 S12: 0.2181 S13: 0.1430 REMARK 3 S21: -0.3246 S22: 0.0271 S23: 0.4016 REMARK 3 S31: -0.1399 S32: -0.4482 S33: 0.0821 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 58:87) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5275 52.2919 7.0456 REMARK 3 T TENSOR REMARK 3 T11: -0.0169 T22: -0.0359 REMARK 3 T33: -0.0462 T12: -0.0230 REMARK 3 T13: -0.0046 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.2777 L22: 0.4615 REMARK 3 L33: 1.1909 L12: 0.0480 REMARK 3 L13: -0.1984 L23: 0.4177 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.0746 S13: -0.0022 REMARK 3 S21: -0.0793 S22: -0.0065 S23: 0.0208 REMARK 3 S31: -0.0122 S32: -0.1086 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 88:98) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5461 61.4096 21.4632 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: -0.0062 REMARK 3 T33: -0.0166 T12: 0.0140 REMARK 3 T13: 0.0130 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4968 L22: 0.0000 REMARK 3 L33: 1.3298 L12: 0.1584 REMARK 3 L13: -0.2611 L23: 0.7976 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: 0.0058 S13: 0.0595 REMARK 3 S21: -0.0632 S22: 0.0296 S23: 0.0495 REMARK 3 S31: -0.0881 S32: -0.2528 S33: -0.0354 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 99:108) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9892 61.7698 26.5030 REMARK 3 T TENSOR REMARK 3 T11: -0.0221 T22: 0.1605 REMARK 3 T33: 0.0332 T12: 0.0064 REMARK 3 T13: 0.0109 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 2.7955 L22: 2.6762 REMARK 3 L33: 0.3084 L12: -2.7104 REMARK 3 L13: -1.6802 L23: 0.3483 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.0338 S13: -0.1164 REMARK 3 S21: 0.1844 S22: -0.0430 S23: 0.1020 REMARK 3 S31: -0.0646 S32: -0.2333 S33: 0.0893 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 109:145) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1383 57.9405 26.8097 REMARK 3 T TENSOR REMARK 3 T11: -0.0314 T22: -0.0128 REMARK 3 T33: -0.0476 T12: -0.0158 REMARK 3 T13: 0.0072 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.1213 L22: 1.7143 REMARK 3 L33: 2.1185 L12: -0.0530 REMARK 3 L13: -0.2823 L23: 1.2773 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.0400 S13: 0.0208 REMARK 3 S21: 0.1381 S22: -0.1259 S23: 0.1294 REMARK 3 S31: 0.1260 S32: -0.2178 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 23:35) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5385 57.4983 20.6921 REMARK 3 T TENSOR REMARK 3 T11: -0.0121 T22: -0.0454 REMARK 3 T33: -0.0485 T12: -0.0010 REMARK 3 T13: -0.0051 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 3.7067 L22: 1.7286 REMARK 3 L33: 1.7431 L12: -1.6346 REMARK 3 L13: 0.2375 L23: -0.1826 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: -0.0494 S13: -0.1546 REMARK 3 S21: 0.0907 S22: -0.0528 S23: 0.0759 REMARK 3 S31: -0.0301 S32: 0.0168 S33: -0.0258 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 36:54) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4827 59.7882 21.7470 REMARK 3 T TENSOR REMARK 3 T11: -0.0370 T22: 0.0025 REMARK 3 T33: -0.0421 T12: -0.0435 REMARK 3 T13: -0.0440 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.7668 L22: 3.4580 REMARK 3 L33: 4.3768 L12: 0.1850 REMARK 3 L13: -1.5596 L23: -1.8291 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: -0.3143 S13: -0.0310 REMARK 3 S21: 0.1691 S22: -0.0135 S23: -0.2583 REMARK 3 S31: -0.2626 S32: 0.3665 S33: -0.0454 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 55:62) REMARK 3 ORIGIN FOR THE GROUP (A): 47.8049 59.3621 30.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.0653 REMARK 3 T33: -0.0534 T12: -0.0100 REMARK 3 T13: -0.0078 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 1.2970 L12: -1.0853 REMARK 3 L13: 1.3626 L23: -0.2894 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.2533 S13: 0.0031 REMARK 3 S21: 0.2040 S22: 0.0042 S23: 0.0204 REMARK 3 S31: 0.0301 S32: 0.0370 S33: -0.0136 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 63:72) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1514 60.2407 22.5827 REMARK 3 T TENSOR REMARK 3 T11: -0.0023 T22: -0.0083 REMARK 3 T33: -0.0362 T12: -0.0055 REMARK 3 T13: -0.0016 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.7518 L22: 1.7385 REMARK 3 L33: 3.8783 L12: 0.8681 REMARK 3 L13: -0.3933 L23: 0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.0602 S13: 0.1510 REMARK 3 S21: 0.0000 S22: -0.0617 S23: -0.0595 REMARK 3 S31: -0.2206 S32: 0.0317 S33: 0.0351 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 73:98) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9874 53.3636 19.3056 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: -0.0033 REMARK 3 T33: -0.0309 T12: -0.0137 REMARK 3 T13: -0.0107 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.9361 L22: 0.0000 REMARK 3 L33: 0.2891 L12: -0.0959 REMARK 3 L13: -0.3698 L23: 0.5169 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.1795 S13: -0.0515 REMARK 3 S21: 0.0959 S22: -0.0779 S23: -0.1267 REMARK 3 S31: 0.0081 S32: 0.1283 S33: 0.0781 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 99:108) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4174 64.7098 4.8280 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0607 REMARK 3 T33: 0.0378 T12: -0.0243 REMARK 3 T13: 0.0050 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.9211 L22: 2.2483 REMARK 3 L33: 1.0948 L12: 0.2831 REMARK 3 L13: -1.9015 L23: -1.0980 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: 0.0914 S13: 0.0920 REMARK 3 S21: -0.0515 S22: 0.0521 S23: -0.2114 REMARK 3 S31: -0.0966 S32: 0.1549 S33: -0.0663 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 109:145) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4361 58.9219 4.9708 REMARK 3 T TENSOR REMARK 3 T11: -0.0026 T22: -0.0205 REMARK 3 T33: -0.0190 T12: 0.0056 REMARK 3 T13: -0.0032 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.2300 L22: 0.6571 REMARK 3 L33: 1.1974 L12: -0.3414 REMARK 3 L13: -0.2462 L23: -0.3622 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.1059 S13: 0.0215 REMARK 3 S21: -0.0125 S22: -0.0129 S23: -0.0714 REMARK 3 S31: 0.0026 S32: 0.0249 S33: -0.0536 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290049211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35137 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 51.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 2.5W/V PEG 400, REMARK 280 PH7 HEPES REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.74500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 MET B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 VAL B 9 REMARK 465 ASP B 10 REMARK 465 LEU B 11 REMARK 465 GLY B 12 REMARK 465 THR B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 LEU B 16 REMARK 465 TYR B 17 REMARK 465 PHE B 18 REMARK 465 GLN B 19 REMARK 465 SER B 20 REMARK 465 MET B 21 REMARK 465 LEU B 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ASN A 15 CG OD1 ND2 REMARK 470 TYR A 17 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 18 CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 23 CG1 CG2 CD1 REMARK 470 ILE B 23 CG1 CG2 CD1 REMARK 470 ARG B 24 CZ NH1 NH2 REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 GLU B 96 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2083 O HOH B 2004 2.06 REMARK 500 OE1 GLU A 141 O HOH A 2121 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 56 -44.33 63.72 REMARK 500 GLU B 56 -50.45 72.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1147 DBREF 3ZW5 A 22 145 UNP A6NK44 GLOD5_HUMAN 22 145 DBREF 3ZW5 B 22 145 UNP A6NK44 GLOD5_HUMAN 22 145 SEQADV 3ZW5 MET A -1 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS A 0 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS A 1 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS A 2 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS A 3 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS A 4 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS A 5 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 SER A 6 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 SER A 7 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 GLY A 8 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 VAL A 9 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 ASP A 10 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 LEU A 11 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 GLY A 12 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 THR A 13 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 GLU A 14 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 ASN A 15 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 LEU A 16 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 TYR A 17 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 PHE A 18 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 GLN A 19 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 SER A 20 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 MET A 21 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 MET B -1 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS B 0 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS B 1 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS B 2 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS B 3 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS B 4 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 HIS B 5 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 SER B 6 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 SER B 7 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 GLY B 8 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 VAL B 9 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 ASP B 10 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 LEU B 11 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 GLY B 12 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 THR B 13 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 GLU B 14 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 ASN B 15 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 LEU B 16 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 TYR B 17 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 PHE B 18 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 GLN B 19 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 SER B 20 UNP A6NK44 EXPRESSION TAG SEQADV 3ZW5 MET B 21 UNP A6NK44 EXPRESSION TAG SEQRES 1 A 147 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 147 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ILE ARG SEQRES 3 A 147 ARG LEU ASP HIS ILE VAL MET THR VAL LYS SER ILE LYS SEQRES 4 A 147 ASP THR THR MET PHE TYR SER LYS ILE LEU GLY MET GLU SEQRES 5 A 147 VAL MET THR PHE LYS GLU ASP ARG LYS ALA LEU CYS PHE SEQRES 6 A 147 GLY ASP GLN LYS PHE ASN LEU HIS GLU VAL GLY LYS GLU SEQRES 7 A 147 PHE GLU PRO LYS ALA ALA HIS PRO VAL PRO GLY SER LEU SEQRES 8 A 147 ASP ILE CYS LEU ILE THR GLU VAL PRO LEU GLU GLU MET SEQRES 9 A 147 ILE GLN HIS LEU LYS ALA CYS ASP VAL PRO ILE GLU GLU SEQRES 10 A 147 GLY PRO VAL PRO ARG THR GLY ALA LYS GLY PRO ILE MET SEQRES 11 A 147 SER ILE TYR PHE ARG ASP PRO ASP ARG ASN LEU ILE GLU SEQRES 12 A 147 VAL SER ASN TYR SEQRES 1 B 147 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 147 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ILE ARG SEQRES 3 B 147 ARG LEU ASP HIS ILE VAL MET THR VAL LYS SER ILE LYS SEQRES 4 B 147 ASP THR THR MET PHE TYR SER LYS ILE LEU GLY MET GLU SEQRES 5 B 147 VAL MET THR PHE LYS GLU ASP ARG LYS ALA LEU CYS PHE SEQRES 6 B 147 GLY ASP GLN LYS PHE ASN LEU HIS GLU VAL GLY LYS GLU SEQRES 7 B 147 PHE GLU PRO LYS ALA ALA HIS PRO VAL PRO GLY SER LEU SEQRES 8 B 147 ASP ILE CYS LEU ILE THR GLU VAL PRO LEU GLU GLU MET SEQRES 9 B 147 ILE GLN HIS LEU LYS ALA CYS ASP VAL PRO ILE GLU GLU SEQRES 10 B 147 GLY PRO VAL PRO ARG THR GLY ALA LYS GLY PRO ILE MET SEQRES 11 B 147 SER ILE TYR PHE ARG ASP PRO ASP ARG ASN LEU ILE GLU SEQRES 12 B 147 VAL SER ASN TYR HET SO4 A1146 5 HET PEG A1147 7 HET EDO A1148 4 HET SO4 B1146 5 HET EDO B1147 4 HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 PEG C4 H10 O3 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 8 HOH *205(H2 O) HELIX 1 1 GLU A 14 MET A 21 1 8 HELIX 2 2 SER A 35 GLY A 48 1 14 HELIX 3 3 PRO A 98 CYS A 109 1 12 HELIX 4 4 SER B 35 GLY B 48 1 14 HELIX 5 5 PRO B 98 CYS B 109 1 12 SHEET 1 AA 8 GLU A 50 PHE A 54 0 SHEET 2 AA 8 ARG A 58 PHE A 63 -1 O ARG A 58 N PHE A 54 SHEET 3 AA 8 GLN A 66 GLU A 72 -1 O GLN A 66 N PHE A 63 SHEET 4 AA 8 ARG A 24 VAL A 33 1 O ASP A 27 N LYS A 67 SHEET 5 AA 8 ASP B 90 THR B 95 -1 O ASP B 90 N VAL A 30 SHEET 6 AA 8 LEU B 139 ASN B 144 1 O LEU B 139 N ILE B 91 SHEET 7 AA 8 GLY B 125 ARG B 133 -1 O MET B 128 N ASN B 144 SHEET 8 AA 8 GLU B 115 GLY B 122 -1 O GLU B 115 N TYR B 131 SHEET 1 AB 8 GLU A 115 GLY A 122 0 SHEET 2 AB 8 GLY A 125 ARG A 133 -1 O GLY A 125 N GLY A 122 SHEET 3 AB 8 LEU A 139 ASN A 144 -1 O ILE A 140 N PHE A 132 SHEET 4 AB 8 ASP A 90 ILE A 94 1 O ILE A 91 N GLU A 141 SHEET 5 AB 8 ARG B 25 VAL B 33 -1 O ARG B 25 N ILE A 94 SHEET 6 AB 8 LYS B 67 GLU B 72 1 O LYS B 67 N ILE B 29 SHEET 7 AB 8 ARG B 58 CYS B 62 -1 O LYS B 59 N LEU B 70 SHEET 8 AB 8 GLU B 50 PHE B 54 -1 O GLU B 50 N CYS B 62 CISPEP 1 GLU A 78 PRO A 79 0 -5.81 CISPEP 2 GLY A 116 PRO A 117 0 0.75 CISPEP 3 GLU B 78 PRO B 79 0 1.31 CISPEP 4 GLY B 116 PRO B 117 0 1.74 SITE 1 AC1 10 ARG A 120 THR A 121 HOH A2109 HOH A2110 SITE 2 AC1 10 HOH A2111 HOH A2117 PHE B 54 LYS B 55 SITE 3 AC1 10 ARG B 58 ASN B 69 SITE 1 AC2 7 ILE A 36 GLU A 56 ASP A 57 LYS A 59 SITE 2 AC2 7 HOH A2129 GLU B 114 HOH B2055 SITE 1 AC3 2 CYS A 109 VAL A 111 SITE 1 AC4 10 PHE A 54 LYS A 55 ARG A 58 HOH A2018 SITE 2 AC4 10 HOH A2058 HOH A2066 ARG B 120 THR B 121 SITE 3 AC4 10 HOH B2063 HOH B2067 SITE 1 AC5 2 LYS B 45 CYS B 109 CRYST1 51.490 66.040 76.870 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019421 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013009 0.00000 MTRIX1 1 -0.976100 -0.217200 0.007400 48.18590 1 MTRIX2 1 -0.217000 0.971800 -0.092500 59.13390 1 MTRIX3 1 0.012900 -0.091900 -0.995700 14.61920 1