PDB Short entry for 4A04 HEADER TRANSCRIPTION 07-SEP-11 4A04 TITLE STRUCTURE OF THE DNA-BOUND T-BOX DOMAIN OF HUMAN TBX1, A TRANSCRIPTION TITLE 2 FACTOR ASSOCIATED WITH THE DIGEORGE SYNDROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-BOX TRANSCRIPTION FACTOR TBX1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TBOX DOMAIN, RESIDUES 109-297; COMPND 5 SYNONYM: TBX1, T-BOX PROTEIN 1, TESTIS-SPECIFIC T-BOX PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA; COMPND 9 CHAIN: D, E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, T-BOX PROTEINS, PROTEIN-DNA INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,J.DE MESMAEKER,D.KARIA,H.GINN,S.BHATTACHARYA,E.J.MANCINI REVDAT 6 20-DEC-23 4A04 1 REMARK REVDAT 5 12-SEP-12 4A04 1 REMARK REVDAT 4 18-APR-12 4A04 1 JRNL REVDAT 3 30-NOV-11 4A04 1 JRNL REVDAT 2 26-OCT-11 4A04 1 TITLE REVDAT 1 12-OCT-11 4A04 0 JRNL AUTH K.EL OMARI,J.DE MESMAEKER,D.KARIA,H.GINN,S.BHATTACHARYA, JRNL AUTH 2 E.J.MANCINI JRNL TITL STRUCTURE OF THE DNA-BOUND T-BOX DOMAIN OF HUMAN TBX1, A JRNL TITL 2 TRANSCRIPTION FACTOR ASSOCIATED WITH THE DIGEORGE SYNDROME JRNL REF PROTEINS V. 80 655 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22095455 JRNL DOI 10.1002/PROT.23208 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 21470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1100 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2809 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2558 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2674 REMARK 3 BIN R VALUE (WORKING SET) : 0.2533 REMARK 3 BIN FREE R VALUE : 0.3036 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.81 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3039 REMARK 3 NUCLEIC ACID ATOMS : 957 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.39500 REMARK 3 B22 (A**2) : -16.80650 REMARK 3 B33 (A**2) : 4.41150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.444 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.496 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.255 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.468 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.254 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4198 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5875 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1634 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 73 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 500 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4198 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 525 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4055 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.18 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.29 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -23.8314 41.0857 -6.2341 REMARK 3 T TENSOR REMARK 3 T11: -0.1636 T22: 0.0078 REMARK 3 T33: -0.0195 T12: 0.0052 REMARK 3 T13: 0.0429 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.5445 L22: 1.3381 REMARK 3 L33: 3.7838 L12: -0.7100 REMARK 3 L13: 0.3817 L23: -0.6220 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.1084 S13: 0.2575 REMARK 3 S21: 0.0156 S22: 0.0170 S23: -0.1326 REMARK 3 S31: -0.0243 S32: 0.1905 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -11.7048 4.1416 -10.4055 REMARK 3 T TENSOR REMARK 3 T11: -0.1530 T22: -0.0093 REMARK 3 T33: -0.0543 T12: 0.0077 REMARK 3 T13: -0.0466 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.6765 L22: 1.0699 REMARK 3 L33: 4.5990 L12: -0.0460 REMARK 3 L13: 0.1976 L23: 0.3026 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: -0.2464 S13: -0.1797 REMARK 3 S21: -0.0630 S22: 0.0675 S23: -0.0798 REMARK 3 S31: 0.1001 S32: -0.2905 S33: -0.0721 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -18.3267 25.6331 -27.9328 REMARK 3 T TENSOR REMARK 3 T11: -0.0921 T22: 0.1172 REMARK 3 T33: -0.0322 T12: 0.1843 REMARK 3 T13: -0.0055 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.4678 L22: 2.5208 REMARK 3 L33: 0.6701 L12: -1.7212 REMARK 3 L13: -0.6689 L23: 0.6543 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: 0.1426 S13: 0.0294 REMARK 3 S21: -0.1034 S22: 0.0056 S23: -0.0467 REMARK 3 S31: -0.0324 S32: -0.0068 S33: 0.0304 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -18.3537 24.4595 -27.6744 REMARK 3 T TENSOR REMARK 3 T11: -0.1802 T22: 0.1278 REMARK 3 T33: -0.0193 T12: 0.2034 REMARK 3 T13: 0.0936 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 1.8731 L22: 2.6359 REMARK 3 L33: 0.6296 L12: -1.6124 REMARK 3 L13: -0.4246 L23: 0.7845 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: 0.1028 S13: -0.0244 REMARK 3 S21: -0.0683 S22: 0.0031 S23: -0.0117 REMARK 3 S31: 0.0095 S32: -0.1752 S33: 0.0223 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 250-257 DISORDERED IN CHAIN A REMARK 4 REMARK 4 4A04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97780 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 71.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1XBR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% (W/V) POLYETHYLENE GLYCOL 6000, 100 REMARK 280 MM CITRATE PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 GLU A 102 REMARK 465 ASN A 103 REMARK 465 LEU A 104 REMARK 465 TYR A 105 REMARK 465 PHE A 106 REMARK 465 GLN A 107 REMARK 465 GLY A 108 REMARK 465 LYS A 250 REMARK 465 ASP A 251 REMARK 465 SER A 252 REMARK 465 GLU A 253 REMARK 465 LYS A 254 REMARK 465 TYR A 255 REMARK 465 ALA A 256 REMARK 465 GLU A 257 REMARK 465 MET B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 HIS B 98 REMARK 465 HIS B 99 REMARK 465 HIS B 100 REMARK 465 HIS B 101 REMARK 465 GLU B 102 REMARK 465 ASN B 103 REMARK 465 LEU B 104 REMARK 465 TYR B 105 REMARK 465 PHE B 106 REMARK 465 GLN B 107 REMARK 465 DT D 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA E 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D 1 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA D 2 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DT D 3 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DT D 4 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC D 10 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA D 13 C3' - O3' - P ANGL. DEV. = 12.1 DEGREES REMARK 500 DG D 14 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT D 16 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG D 17 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DG D 19 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG D 19 C3' - O3' - P ANGL. DEV. = 9.8 DEGREES REMARK 500 DA D 22 C3' - O3' - P ANGL. DEV. = 11.7 DEGREES REMARK 500 DT D 23 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA E 2 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DT E 4 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DC E 6 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC E 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA E 9 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DC E 10 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC E 11 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA E 13 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 DG E 14 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT E 16 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG E 17 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DG E 19 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG E 19 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DA E 22 C3' - O3' - P ANGL. DEV. = 11.9 DEGREES REMARK 500 DT E 23 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 167 57.14 -101.87 REMARK 500 PHE A 213 62.99 -113.34 REMARK 500 ASP B 167 58.62 -102.87 REMARK 500 PHE B 213 62.40 -101.60 REMARK 500 MET B 234 14.42 80.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 4A04 A 109 297 UNP O43435 TBX1_HUMAN 109 297 DBREF 4A04 B 109 297 UNP O43435 TBX1_HUMAN 109 297 DBREF 4A04 D 1 24 PDB 4A04 4A04 1 24 DBREF 4A04 E 1 24 PDB 4A04 4A04 1 24 SEQADV 4A04 MET A 95 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS A 96 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS A 97 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS A 98 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS A 99 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS A 100 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS A 101 UNP O43435 EXPRESSION TAG SEQADV 4A04 GLU A 102 UNP O43435 EXPRESSION TAG SEQADV 4A04 ASN A 103 UNP O43435 EXPRESSION TAG SEQADV 4A04 LEU A 104 UNP O43435 EXPRESSION TAG SEQADV 4A04 TYR A 105 UNP O43435 EXPRESSION TAG SEQADV 4A04 PHE A 106 UNP O43435 EXPRESSION TAG SEQADV 4A04 GLN A 107 UNP O43435 EXPRESSION TAG SEQADV 4A04 GLY A 108 UNP O43435 EXPRESSION TAG SEQADV 4A04 MET B 95 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS B 96 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS B 97 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS B 98 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS B 99 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS B 100 UNP O43435 EXPRESSION TAG SEQADV 4A04 HIS B 101 UNP O43435 EXPRESSION TAG SEQADV 4A04 GLU B 102 UNP O43435 EXPRESSION TAG SEQADV 4A04 ASN B 103 UNP O43435 EXPRESSION TAG SEQADV 4A04 LEU B 104 UNP O43435 EXPRESSION TAG SEQADV 4A04 TYR B 105 UNP O43435 EXPRESSION TAG SEQADV 4A04 PHE B 106 UNP O43435 EXPRESSION TAG SEQADV 4A04 GLN B 107 UNP O43435 EXPRESSION TAG SEQADV 4A04 GLY B 108 UNP O43435 EXPRESSION TAG SEQRES 1 A 203 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 203 GLY GLY VAL SER VAL GLN LEU GLU MET LYS ALA LEU TRP SEQRES 3 A 203 ASP GLU PHE ASN GLN LEU GLY THR GLU MET ILE VAL THR SEQRES 4 A 203 LYS ALA GLY ARG ARG MET PHE PRO THR PHE GLN VAL LYS SEQRES 5 A 203 LEU PHE GLY MET ASP PRO MET ALA ASP TYR MET LEU LEU SEQRES 6 A 203 MET ASP PHE VAL PRO VAL ASP ASP LYS ARG TYR ARG TYR SEQRES 7 A 203 ALA PHE HIS SER SER SER TRP LEU VAL ALA GLY LYS ALA SEQRES 8 A 203 ASP PRO ALA THR PRO GLY ARG VAL HIS TYR HIS PRO ASP SEQRES 9 A 203 SER PRO ALA LYS GLY ALA GLN TRP MET LYS GLN ILE VAL SEQRES 10 A 203 SER PHE ASP LYS LEU LYS LEU THR ASN ASN LEU LEU ASP SEQRES 11 A 203 ASP ASN GLY HIS ILE ILE LEU ASN SER MET HIS ARG TYR SEQRES 12 A 203 GLN PRO ARG PHE HIS VAL VAL TYR VAL ASP PRO ARG LYS SEQRES 13 A 203 ASP SER GLU LYS TYR ALA GLU GLU ASN PHE LYS THR PHE SEQRES 14 A 203 VAL PHE GLU GLU THR ARG PHE THR ALA VAL THR ALA TYR SEQRES 15 A 203 GLN ASN HIS ARG ILE THR GLN LEU LYS ILE ALA SER ASN SEQRES 16 A 203 PRO PHE ALA LYS GLY PHE ARG ASP SEQRES 1 B 203 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 203 GLY GLY VAL SER VAL GLN LEU GLU MET LYS ALA LEU TRP SEQRES 3 B 203 ASP GLU PHE ASN GLN LEU GLY THR GLU MET ILE VAL THR SEQRES 4 B 203 LYS ALA GLY ARG ARG MET PHE PRO THR PHE GLN VAL LYS SEQRES 5 B 203 LEU PHE GLY MET ASP PRO MET ALA ASP TYR MET LEU LEU SEQRES 6 B 203 MET ASP PHE VAL PRO VAL ASP ASP LYS ARG TYR ARG TYR SEQRES 7 B 203 ALA PHE HIS SER SER SER TRP LEU VAL ALA GLY LYS ALA SEQRES 8 B 203 ASP PRO ALA THR PRO GLY ARG VAL HIS TYR HIS PRO ASP SEQRES 9 B 203 SER PRO ALA LYS GLY ALA GLN TRP MET LYS GLN ILE VAL SEQRES 10 B 203 SER PHE ASP LYS LEU LYS LEU THR ASN ASN LEU LEU ASP SEQRES 11 B 203 ASP ASN GLY HIS ILE ILE LEU ASN SER MET HIS ARG TYR SEQRES 12 B 203 GLN PRO ARG PHE HIS VAL VAL TYR VAL ASP PRO ARG LYS SEQRES 13 B 203 ASP SER GLU LYS TYR ALA GLU GLU ASN PHE LYS THR PHE SEQRES 14 B 203 VAL PHE GLU GLU THR ARG PHE THR ALA VAL THR ALA TYR SEQRES 15 B 203 GLN ASN HIS ARG ILE THR GLN LEU LYS ILE ALA SER ASN SEQRES 16 B 203 PRO PHE ALA LYS GLY PHE ARG ASP SEQRES 1 D 24 DA DA DT DT DT DC DA DC DA DC DC DT DA SEQRES 2 D 24 DG DG DT DG DT DG DA DA DA DT DT SEQRES 1 E 24 DA DA DT DT DT DC DA DC DA DC DC DT DA SEQRES 2 E 24 DG DG DT DG DT DG DA DA DA DT DT FORMUL 5 HOH *66(H2 O) HELIX 1 1 MET A 116 GLY A 127 1 12 HELIX 2 2 GLY A 203 GLN A 209 1 7 HELIX 3 3 GLU A 266 ARG A 269 5 4 HELIX 4 4 ASN A 278 ASN A 289 1 12 HELIX 5 5 PRO A 290 ARG A 296 5 7 HELIX 6 6 MET B 116 GLY B 127 1 12 HELIX 7 7 GLY B 203 GLN B 209 1 7 HELIX 8 8 GLU B 266 ARG B 269 5 4 HELIX 9 9 ASN B 278 ASN B 289 1 12 HELIX 10 10 PRO B 290 ARG B 296 5 7 SHEET 1 AA 3 SER A 111 LEU A 114 0 SHEET 2 AA 3 PHE A 143 PHE A 148 -1 O LYS A 146 N GLN A 113 SHEET 3 AA 3 VAL A 211 PHE A 213 -1 O VAL A 211 N VAL A 145 SHEET 1 AB 4 GLU A 129 ILE A 131 0 SHEET 2 AB 4 PHE A 270 VAL A 273 1 O THR A 271 N MET A 130 SHEET 3 AB 4 ARG A 236 TYR A 245 -1 O TYR A 237 N PHE A 270 SHEET 4 AB 4 PHE A 260 VAL A 264 -1 O LYS A 261 N VAL A 243 SHEET 1 AC 5 GLU A 129 ILE A 131 0 SHEET 2 AC 5 PHE A 270 VAL A 273 1 O THR A 271 N MET A 130 SHEET 3 AC 5 ARG A 236 TYR A 245 -1 O TYR A 237 N PHE A 270 SHEET 4 AC 5 ASP A 155 PRO A 164 -1 O MET A 157 N VAL A 244 SHEET 5 AC 5 ALA A 201 LYS A 202 -1 O ALA A 201 N TYR A 156 SHEET 1 AD 2 PHE A 260 VAL A 264 0 SHEET 2 AD 2 ARG A 236 TYR A 245 -1 O PHE A 241 N PHE A 263 SHEET 1 AE 3 ARG A 137 ARG A 138 0 SHEET 2 AE 3 LYS A 217 THR A 219 -1 O LEU A 218 N ARG A 137 SHEET 3 AE 3 ILE A 229 ILE A 230 1 O ILE A 229 N THR A 219 SHEET 1 AF 2 LYS A 168 ALA A 173 0 SHEET 2 AF 2 SER A 178 LYS A 184 -1 O SER A 178 N ALA A 173 SHEET 1 BA 3 SER B 111 LEU B 114 0 SHEET 2 BA 3 PHE B 143 PHE B 148 -1 O LYS B 146 N GLN B 113 SHEET 3 BA 3 VAL B 211 PHE B 213 -1 O VAL B 211 N VAL B 145 SHEET 1 BB 4 GLU B 129 ILE B 131 0 SHEET 2 BB 4 PHE B 270 VAL B 273 1 O THR B 271 N MET B 130 SHEET 3 BB 4 ARG B 236 TYR B 245 -1 O TYR B 237 N PHE B 270 SHEET 4 BB 4 PHE B 260 VAL B 264 -1 O LYS B 261 N VAL B 243 SHEET 1 BC 5 GLU B 129 ILE B 131 0 SHEET 2 BC 5 PHE B 270 VAL B 273 1 O THR B 271 N MET B 130 SHEET 3 BC 5 ARG B 236 TYR B 245 -1 O TYR B 237 N PHE B 270 SHEET 4 BC 5 ASP B 155 PRO B 164 -1 O MET B 157 N VAL B 244 SHEET 5 BC 5 HIS B 194 TYR B 195 -1 O HIS B 194 N MET B 160 SHEET 1 BD 2 ALA B 201 LYS B 202 0 SHEET 2 BD 2 ASP B 155 PRO B 164 -1 O TYR B 156 N ALA B 201 SHEET 1 BE 5 GLU B 129 ILE B 131 0 SHEET 2 BE 5 PHE B 270 VAL B 273 1 O THR B 271 N MET B 130 SHEET 3 BE 5 ARG B 236 TYR B 245 -1 O TYR B 237 N PHE B 270 SHEET 4 BE 5 ASP B 155 PRO B 164 -1 O MET B 157 N VAL B 244 SHEET 5 BE 5 ALA B 201 LYS B 202 -1 O ALA B 201 N TYR B 156 SHEET 1 BF 2 PHE B 260 VAL B 264 0 SHEET 2 BF 2 ARG B 236 TYR B 245 -1 O PHE B 241 N PHE B 263 SHEET 1 BG 3 ARG B 137 ARG B 138 0 SHEET 2 BG 3 LYS B 217 THR B 219 -1 O LEU B 218 N ARG B 137 SHEET 3 BG 3 ILE B 229 ILE B 230 1 O ILE B 229 N THR B 219 SHEET 1 BH 2 LYS B 168 ALA B 173 0 SHEET 2 BH 2 SER B 178 LYS B 184 -1 O SER B 178 N ALA B 173 CISPEP 1 PHE A 140 PRO A 141 0 2.40 CISPEP 2 SER A 199 PRO A 200 0 -0.21 CISPEP 3 PHE B 140 PRO B 141 0 -0.56 CISPEP 4 SER B 199 PRO B 200 0 -0.27 CRYST1 71.420 92.740 101.020 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014002 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009899 0.00000