PDB Short entry for 4A12 HEADER TRANSCRIPTION 13-SEP-11 4A12 TITLE STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM TITLE 2 STAPHYLOCOCCUS AUREUS IN COMPLEX WITH DNA OPERATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR FAPR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FATTY ACID AND PHOSPHOLIPID BIOSYNTHESIS REGULATOR, COMPND 5 REPRESSOR FACTOR FAPR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FAPR PROMOTER; COMPND 9 CHAIN: F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FAPR PROMOTER; COMPND 13 CHAIN: G; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 13 ORGANISM_TAXID: 1423; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 17 ORGANISM_TAXID: 1423 KEYWDS TRANSCRIPTION, LIPID HOMEOSTASIS EXPDTA X-RAY DIFFRACTION AUTHOR D.ALBANESI,M.E.GUERIN,A.BUSCHIAZZO,D.DE MENDOZA,P.M.ALZARI REVDAT 3 20-DEC-23 4A12 1 LINK REVDAT 2 23-JAN-13 4A12 1 JRNL REVDAT 1 26-SEP-12 4A12 0 JRNL AUTH D.ALBANESI,G.REH,M.E.GUERIN,F.SCHAEFFER,M.DEBARBOUILLE, JRNL AUTH 2 A.BUSCHIAZZO,G.E.SCHUJMAN,D.DE MENDOZA,P.M.ALZARI JRNL TITL STRUCTURAL BASIS FOR FEED-FORWARD TRANSCRIPTIONAL REGULATION JRNL TITL 2 OF MEMBRANE LIPID HOMEOSTASIS IN STAPHYLOCOCCUS AUREUS. JRNL REF PLOS PATHOG. V. 9 3108 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23300457 JRNL DOI 10.1371/JOURNAL.PPAT.1003108 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 44024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2237 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3099 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2400 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2946 REMARK 3 BIN R VALUE (WORKING SET) : 0.2409 REMARK 3 BIN FREE R VALUE : 0.2241 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.94 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6040 REMARK 3 NUCLEIC ACID ATOMS : 1634 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.32200 REMARK 3 B22 (A**2) : 6.82830 REMARK 3 B33 (A**2) : 10.49380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.745 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.429 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.259 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.445 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.265 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7968 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11092 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3228 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 176 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 942 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7968 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1072 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8527 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (F1-F40, G1-G40, A7-A69, B4-B69, C4-C69, D7-D69) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6080 53.8390 -43.6950 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.1851 REMARK 3 T33: 0.2821 T12: 0.0079 REMARK 3 T13: 0.0032 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.5859 L22: 2.6589 REMARK 3 L33: 4.6996 L12: -0.0903 REMARK 3 L13: -0.0673 L23: 0.6096 REMARK 3 S TENSOR REMARK 3 S11: 0.3186 S12: 0.0531 S13: -0.0828 REMARK 3 S21: 0.0282 S22: -0.0912 S23: -0.3076 REMARK 3 S31: 0.0578 S32: 0.2376 S33: -0.2275 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (A70-A189, B70-B189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2260 61.6160 -5.9140 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 1.0407 REMARK 3 T33: 0.1592 T12: -0.1201 REMARK 3 T13: 0.1390 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 5.8431 L22: 2.2860 REMARK 3 L33: 5.7396 L12: -1.2478 REMARK 3 L13: 0.6568 L23: 0.9909 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -1.6448 S13: 0.0347 REMARK 3 S21: 0.2689 S22: 0.2412 S23: -0.1399 REMARK 3 S31: -0.1551 S32: -0.4576 S33: -0.2851 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (C70-C189, D70-D189) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5980 46.7480 -86.2450 REMARK 3 T TENSOR REMARK 3 T11: 0.2605 T22: 0.6528 REMARK 3 T33: 0.1754 T12: 0.2187 REMARK 3 T13: -0.1894 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 4.7430 L22: 2.2301 REMARK 3 L33: 7.0230 L12: 0.4567 REMARK 3 L13: -0.8650 L23: 0.3145 REMARK 3 S TENSOR REMARK 3 S11: 0.2302 S12: 0.9784 S13: -0.2909 REMARK 3 S21: -0.1148 S22: 0.0635 S23: -0.0483 REMARK 3 S31: 0.7934 S32: 0.1516 S33: -0.2937 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4A12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44060 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4A0X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M SODIUM FORMATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 124.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.34500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 124.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.60500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.34500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 124.97000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.60500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.34500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 124.97000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 LEU A 6 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 MSE C 1 REMARK 465 ARG C 2 REMARK 465 GLY C 3 REMARK 465 MSE D 1 REMARK 465 ARG D 2 REMARK 465 GLY D 3 REMARK 465 GLU D 4 REMARK 465 THR D 5 REMARK 465 LEU D 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 190 CA C O REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 GLY B 190 CA C O REMARK 470 GLU C 4 CG CD OE1 OE2 REMARK 470 GLY C 190 CA C O REMARK 470 GLY D 190 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG F 1 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 DC F 3 C3' - O3' - P ANGL. DEV. = 11.8 DEGREES REMARK 500 DA F 4 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DT F 6 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT F 7 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA F 8 C3' - O3' - P ANGL. DEV. = 11.5 DEGREES REMARK 500 DT F 9 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT F 9 C3' - O3' - P ANGL. DEV. = 12.9 DEGREES REMARK 500 DA F 10 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT F 11 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA F 12 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC F 13 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA F 15 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT F 19 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG F 22 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT F 23 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC F 25 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC F 26 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA F 28 O4' - C1' - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 DT F 30 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC F 31 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT F 32 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DT F 33 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT F 33 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DA F 34 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT F 36 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT F 37 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC F 38 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC F 39 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC G 1 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG G 3 C3' - O3' - P ANGL. DEV. = 12.8 DEGREES REMARK 500 DA G 4 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 DT G 6 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT G 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT G 7 C3' - O3' - P ANGL. DEV. = 12.5 DEGREES REMARK 500 DA G 8 C3' - O3' - P ANGL. DEV. = 13.6 DEGREES REMARK 500 DA G 9 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA G 9 C3' - O3' - P ANGL. DEV. = 13.0 DEGREES REMARK 500 DG G 10 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG G 10 C3' - O3' - P ANGL. DEV. = 12.4 DEGREES REMARK 500 DA G 11 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DA G 11 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DC G 12 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DT G 13 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG G 15 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA G 18 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC G 19 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA G 22 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT G 23 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG G 25 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 73 -37.50 -36.53 REMARK 500 GLU A 77 -92.91 -78.61 REMARK 500 VAL A 89 -78.08 -124.92 REMARK 500 ASN A 147 -0.54 75.63 REMARK 500 LYS A 173 -129.76 78.90 REMARK 500 LYS B 7 -37.82 -35.25 REMARK 500 ASP B 68 5.83 -68.62 REMARK 500 SER B 71 104.38 71.85 REMARK 500 VAL B 89 -77.64 -124.72 REMARK 500 ASN B 147 -0.98 75.48 REMARK 500 LYS B 188 38.35 -80.83 REMARK 500 ARG B 189 -56.65 -127.54 REMARK 500 LYS C 7 -36.61 -35.93 REMARK 500 SER C 71 101.37 69.14 REMARK 500 VAL C 89 -77.61 -124.57 REMARK 500 ASN C 147 -0.43 75.02 REMARK 500 LYS C 188 41.47 -80.86 REMARK 500 ARG C 189 -54.62 -137.92 REMARK 500 ILE D 73 -32.74 -38.27 REMARK 500 GLU D 77 -89.46 -77.66 REMARK 500 VAL D 89 -77.91 -124.56 REMARK 500 ASN D 147 -0.26 75.18 REMARK 500 LYS D 173 -117.96 73.87 REMARK 500 HIS D 174 57.43 -116.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A0Y RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4A0X RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4A0Z RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS IN COMPLEX WITH MALONYL-COA DBREF 4A12 A 1 190 UNP D6UB50 D6UB50_STAAU 1 190 DBREF 4A12 B 1 190 UNP D6UB50 D6UB50_STAAU 1 190 DBREF 4A12 C 1 190 UNP D6UB50 D6UB50_STAAU 1 190 DBREF 4A12 D 1 190 UNP D6UB50 D6UB50_STAAU 1 190 DBREF1 4A12 F 4 37 GB CP002468 DBREF2 4A12 F 320017650 3872403 3872436 DBREF1 4A12 G 4 37 GB CP002468 DBREF2 4A12 G 320017650 3872436 3872403 SEQADV 4A12 DG F 1 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DC F 2 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DC F 3 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DC F 38 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DC F 39 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DG F 40 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DC G 1 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DG G 2 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DG G 3 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DG G 38 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DG G 39 GB 320017650 CLONING ARTIFACT SEQADV 4A12 DC G 40 GB 320017650 CLONING ARTIFACT SEQRES 1 A 190 MSE ARG GLY GLU THR LEU LYS LEU LYS LYS ASP LYS ARG SEQRES 2 A 190 ARG GLU ALA ILE ARG GLN GLN ILE ASP SER ASN PRO PHE SEQRES 3 A 190 ILE THR ASP HIS GLU LEU SER ASP LEU PHE GLN VAL SER SEQRES 4 A 190 ILE GLN THR ILE ARG LEU ASP ARG THR TYR LEU ASN ILE SEQRES 5 A 190 PRO GLU LEU ARG LYS ARG ILE LYS LEU VAL ALA GLU LYS SEQRES 6 A 190 ASN TYR ASP GLN ILE SER SER ILE GLU GLU GLN GLU PHE SEQRES 7 A 190 ILE GLY ASP LEU ILE GLN VAL ASN PRO ASN VAL LYS ALA SEQRES 8 A 190 GLN SER ILE LEU ASP ILE THR SER ASP SER VAL PHE HIS SEQRES 9 A 190 LYS THR GLY ILE ALA ARG GLY HIS VAL LEU PHE ALA GLN SEQRES 10 A 190 ALA ASN SER LEU CYS VAL ALA LEU ILE LYS GLN PRO THR SEQRES 11 A 190 VAL LEU THR HIS GLU SER SER ILE GLN PHE ILE GLU LYS SEQRES 12 A 190 VAL LYS LEU ASN ASP THR VAL ARG ALA GLU ALA ARG VAL SEQRES 13 A 190 VAL ASN GLN THR ALA LYS HIS TYR TYR VAL GLU VAL LYS SEQRES 14 A 190 SER TYR VAL LYS HIS THR LEU VAL PHE LYS GLY ASN PHE SEQRES 15 A 190 LYS MSE PHE TYR ASP LYS ARG GLY SEQRES 1 B 190 MSE ARG GLY GLU THR LEU LYS LEU LYS LYS ASP LYS ARG SEQRES 2 B 190 ARG GLU ALA ILE ARG GLN GLN ILE ASP SER ASN PRO PHE SEQRES 3 B 190 ILE THR ASP HIS GLU LEU SER ASP LEU PHE GLN VAL SER SEQRES 4 B 190 ILE GLN THR ILE ARG LEU ASP ARG THR TYR LEU ASN ILE SEQRES 5 B 190 PRO GLU LEU ARG LYS ARG ILE LYS LEU VAL ALA GLU LYS SEQRES 6 B 190 ASN TYR ASP GLN ILE SER SER ILE GLU GLU GLN GLU PHE SEQRES 7 B 190 ILE GLY ASP LEU ILE GLN VAL ASN PRO ASN VAL LYS ALA SEQRES 8 B 190 GLN SER ILE LEU ASP ILE THR SER ASP SER VAL PHE HIS SEQRES 9 B 190 LYS THR GLY ILE ALA ARG GLY HIS VAL LEU PHE ALA GLN SEQRES 10 B 190 ALA ASN SER LEU CYS VAL ALA LEU ILE LYS GLN PRO THR SEQRES 11 B 190 VAL LEU THR HIS GLU SER SER ILE GLN PHE ILE GLU LYS SEQRES 12 B 190 VAL LYS LEU ASN ASP THR VAL ARG ALA GLU ALA ARG VAL SEQRES 13 B 190 VAL ASN GLN THR ALA LYS HIS TYR TYR VAL GLU VAL LYS SEQRES 14 B 190 SER TYR VAL LYS HIS THR LEU VAL PHE LYS GLY ASN PHE SEQRES 15 B 190 LYS MSE PHE TYR ASP LYS ARG GLY SEQRES 1 C 190 MSE ARG GLY GLU THR LEU LYS LEU LYS LYS ASP LYS ARG SEQRES 2 C 190 ARG GLU ALA ILE ARG GLN GLN ILE ASP SER ASN PRO PHE SEQRES 3 C 190 ILE THR ASP HIS GLU LEU SER ASP LEU PHE GLN VAL SER SEQRES 4 C 190 ILE GLN THR ILE ARG LEU ASP ARG THR TYR LEU ASN ILE SEQRES 5 C 190 PRO GLU LEU ARG LYS ARG ILE LYS LEU VAL ALA GLU LYS SEQRES 6 C 190 ASN TYR ASP GLN ILE SER SER ILE GLU GLU GLN GLU PHE SEQRES 7 C 190 ILE GLY ASP LEU ILE GLN VAL ASN PRO ASN VAL LYS ALA SEQRES 8 C 190 GLN SER ILE LEU ASP ILE THR SER ASP SER VAL PHE HIS SEQRES 9 C 190 LYS THR GLY ILE ALA ARG GLY HIS VAL LEU PHE ALA GLN SEQRES 10 C 190 ALA ASN SER LEU CYS VAL ALA LEU ILE LYS GLN PRO THR SEQRES 11 C 190 VAL LEU THR HIS GLU SER SER ILE GLN PHE ILE GLU LYS SEQRES 12 C 190 VAL LYS LEU ASN ASP THR VAL ARG ALA GLU ALA ARG VAL SEQRES 13 C 190 VAL ASN GLN THR ALA LYS HIS TYR TYR VAL GLU VAL LYS SEQRES 14 C 190 SER TYR VAL LYS HIS THR LEU VAL PHE LYS GLY ASN PHE SEQRES 15 C 190 LYS MSE PHE TYR ASP LYS ARG GLY SEQRES 1 D 190 MSE ARG GLY GLU THR LEU LYS LEU LYS LYS ASP LYS ARG SEQRES 2 D 190 ARG GLU ALA ILE ARG GLN GLN ILE ASP SER ASN PRO PHE SEQRES 3 D 190 ILE THR ASP HIS GLU LEU SER ASP LEU PHE GLN VAL SER SEQRES 4 D 190 ILE GLN THR ILE ARG LEU ASP ARG THR TYR LEU ASN ILE SEQRES 5 D 190 PRO GLU LEU ARG LYS ARG ILE LYS LEU VAL ALA GLU LYS SEQRES 6 D 190 ASN TYR ASP GLN ILE SER SER ILE GLU GLU GLN GLU PHE SEQRES 7 D 190 ILE GLY ASP LEU ILE GLN VAL ASN PRO ASN VAL LYS ALA SEQRES 8 D 190 GLN SER ILE LEU ASP ILE THR SER ASP SER VAL PHE HIS SEQRES 9 D 190 LYS THR GLY ILE ALA ARG GLY HIS VAL LEU PHE ALA GLN SEQRES 10 D 190 ALA ASN SER LEU CYS VAL ALA LEU ILE LYS GLN PRO THR SEQRES 11 D 190 VAL LEU THR HIS GLU SER SER ILE GLN PHE ILE GLU LYS SEQRES 12 D 190 VAL LYS LEU ASN ASP THR VAL ARG ALA GLU ALA ARG VAL SEQRES 13 D 190 VAL ASN GLN THR ALA LYS HIS TYR TYR VAL GLU VAL LYS SEQRES 14 D 190 SER TYR VAL LYS HIS THR LEU VAL PHE LYS GLY ASN PHE SEQRES 15 D 190 LYS MSE PHE TYR ASP LYS ARG GLY SEQRES 1 F 40 DG DC DC DA DA DT DT DA DT DA DT DA DC SEQRES 2 F 40 DT DA DC DT DA DT DT DA DG DT DA DC DC SEQRES 3 F 40 DT DA DG DT DC DT DT DA DA DT DT DC DC SEQRES 4 F 40 DG SEQRES 1 G 40 DC DG DG DA DA DT DT DA DA DG DA DC DT SEQRES 2 G 40 DA DG DG DT DA DC DT DA DA DT DA DG DT SEQRES 3 G 40 DA DG DT DA DT DA DT DA DA DT DT DG DG SEQRES 4 G 40 DC MODRES 4A12 MSE A 184 MET SELENOMETHIONINE MODRES 4A12 MSE B 184 MET SELENOMETHIONINE MODRES 4A12 MSE C 184 MET SELENOMETHIONINE MODRES 4A12 MSE D 184 MET SELENOMETHIONINE HET MSE A 184 8 HET MSE B 184 8 HET MSE C 184 8 HET MSE D 184 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) HELIX 1 1 LYS A 9 ASN A 24 1 16 HELIX 2 2 THR A 28 GLN A 37 1 10 HELIX 3 3 SER A 39 LEU A 50 1 12 HELIX 4 4 GLU A 54 ASN A 66 1 13 HELIX 5 5 SER A 72 GLN A 76 5 5 HELIX 6 6 ARG A 110 ILE A 126 1 17 HELIX 7 7 LYS B 9 ASN B 24 1 16 HELIX 8 8 THR B 28 GLN B 37 1 10 HELIX 9 9 SER B 39 LEU B 50 1 12 HELIX 10 10 GLU B 54 ASP B 68 1 15 HELIX 11 11 SER B 72 GLU B 77 1 6 HELIX 12 12 ARG B 110 ILE B 126 1 17 HELIX 13 13 LYS C 9 ASN C 24 1 16 HELIX 14 14 THR C 28 GLN C 37 1 10 HELIX 15 15 SER C 39 LEU C 50 1 12 HELIX 16 16 GLU C 54 ASP C 68 1 15 HELIX 17 17 SER C 72 GLU C 77 1 6 HELIX 18 18 ARG C 110 ILE C 126 1 17 HELIX 19 19 LYS D 9 ASN D 24 1 16 HELIX 20 20 THR D 28 GLN D 37 1 10 HELIX 21 21 SER D 39 LEU D 50 1 12 HELIX 22 22 GLU D 54 ASN D 66 1 13 HELIX 23 23 SER D 72 GLN D 76 5 5 HELIX 24 24 ARG D 110 ILE D 126 1 17 SHEET 1 AA12 ASP A 81 ASN A 86 0 SHEET 2 AA12 LYS A 90 ASP A 96 -1 O LYS A 90 N ASN A 86 SHEET 3 AA12 THR A 149 GLN A 159 -1 O VAL A 150 N LEU A 95 SHEET 4 AA12 HIS A 163 TYR A 171 -1 O TYR A 165 N VAL A 157 SHEET 5 AA12 LEU A 176 ASP A 187 -1 N VAL A 177 O SER A 170 SHEET 6 AA12 THR A 130 GLN A 139 -1 O THR A 130 N ASP A 187 SHEET 7 AA12 THR B 130 GLN B 139 -1 O SER B 136 N ILE A 138 SHEET 8 AA12 LEU B 176 ASP B 187 -1 O LYS B 179 N GLN B 139 SHEET 9 AA12 HIS B 163 TYR B 171 -1 O TYR B 164 N MSE B 184 SHEET 10 AA12 THR B 149 GLN B 159 -1 O ARG B 151 N TYR B 171 SHEET 11 AA12 LYS B 90 ASP B 96 -1 O ALA B 91 N ALA B 154 SHEET 12 AA12 ASP B 81 ASN B 86 -1 O ASP B 81 N ILE B 94 SHEET 1 CA12 ASP C 81 ASN C 86 0 SHEET 2 CA12 LYS C 90 ASP C 96 -1 O LYS C 90 N ASN C 86 SHEET 3 CA12 THR C 149 GLN C 159 -1 O VAL C 150 N LEU C 95 SHEET 4 CA12 HIS C 163 TYR C 171 -1 O TYR C 165 N VAL C 157 SHEET 5 CA12 LEU C 176 ASP C 187 -1 N VAL C 177 O SER C 170 SHEET 6 CA12 THR C 130 GLN C 139 -1 O THR C 130 N ASP C 187 SHEET 7 CA12 THR D 130 GLN D 139 -1 O SER D 136 N ILE C 138 SHEET 8 CA12 LEU D 176 ASP D 187 -1 O LYS D 179 N GLN D 139 SHEET 9 CA12 HIS D 163 TYR D 171 -1 O TYR D 164 N MSE D 184 SHEET 10 CA12 THR D 149 GLN D 159 -1 O ARG D 151 N TYR D 171 SHEET 11 CA12 LYS D 90 ASP D 96 -1 O ALA D 91 N ALA D 154 SHEET 12 CA12 ASP D 81 ASN D 86 -1 O ASP D 81 N ILE D 94 LINK C LYS A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N PHE A 185 1555 1555 1.33 LINK C LYS B 183 N MSE B 184 1555 1555 1.34 LINK C MSE B 184 N PHE B 185 1555 1555 1.34 LINK C LYS C 183 N MSE C 184 1555 1555 1.34 LINK C MSE C 184 N PHE C 185 1555 1555 1.34 LINK C LYS D 183 N MSE D 184 1555 1555 1.34 LINK C MSE D 184 N PHE D 185 1555 1555 1.33 CRYST1 114.690 249.940 179.210 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008719 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005580 0.00000