PDB Short entry for 4A49 HEADER LIGASE 07-OCT-11 4A49 TITLE STRUCTURE OF PHOSPHOTYR371-C-CBL-UBCH5B COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE CBL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-CBL RESIDUES 354-435; COMPND 5 SYNONYM: CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE,PROTO-ONCOGENE C- COMPND 6 CBL,RING FINGER PROTEIN 55,RING-TYPE E3 UBIQUITIN TRANSFERASE CBL, COMPND 7 SIGNAL TRANSDUCTION PROTEIN CBL; COMPND 8 EC: 2.3.2.27; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: TYR371 IS PHOSPHORYLATED; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D2; COMPND 14 CHAIN: B; COMPND 15 SYNONYM: (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME D2,E2 COMPND 16 UBIQUITIN-CONJUGATING ENZYME D2,UBIQUITIN CARRIER PROTEIN D2, COMPND 17 UBIQUITIN-CONJUGATING ENZYME E2(17)KB 2,UBIQUITIN-CONJUGATING ENZYME COMPND 18 E2-17 KDA 2,UBIQUITIN-PROTEIN LIGASE D2,P53-REGULATED UBIQUITIN- COMPND 19 CONJUGATING ENZYME 1; COMPND 20 EC: 2.3.2.23,2.3.2.24; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBL, CBL2, RNF55; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DOU,L.BUETOW,A.HOCK,G.J.SIBBET,K.H.VOUSDEN,D.T.HUANG REVDAT 4 20-DEC-23 4A49 1 REMARK LINK REVDAT 3 21-NOV-18 4A49 1 COMPND SOURCE JRNL REMARK REVDAT 3 2 1 DBREF ATOM REVDAT 2 29-FEB-12 4A49 1 JRNL REVDAT 1 25-JAN-12 4A49 0 JRNL AUTH H.DOU,L.BUETOW,A.HOCK,G.J.SIBBET,K.H.VOUSDEN,D.T.HUANG JRNL TITL STRUCTURAL BASIS FOR AUTOINHIBITION AND JRNL TITL 2 PHOSPHORYLATION-DEPENDENT ACTIVATION OF C-CBL. JRNL REF NAT. STRUCT. MOL. BIOL. V. 19 184 2012 JRNL REFN ESSN 1545-9985 JRNL PMID 22266821 JRNL DOI 10.1038/NSMB.2231 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3022 - 4.2336 0.97 2814 137 0.1472 0.1745 REMARK 3 2 4.2336 - 3.3611 1.00 2797 152 0.1462 0.1766 REMARK 3 3 3.3611 - 2.9364 1.00 2773 147 0.1777 0.2346 REMARK 3 4 2.9364 - 2.6681 1.00 2766 148 0.1886 0.2317 REMARK 3 5 2.6681 - 2.4769 1.00 2754 131 0.2050 0.2207 REMARK 3 6 2.4769 - 2.3309 1.00 2727 164 0.2297 0.2857 REMARK 3 7 2.3309 - 2.2141 1.00 2748 166 0.2483 0.3027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 45.77 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.47770 REMARK 3 B22 (A**2) : 3.47770 REMARK 3 B33 (A**2) : -6.95540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1876 REMARK 3 ANGLE : 1.185 2559 REMARK 3 CHIRALITY : 0.095 273 REMARK 3 PLANARITY : 0.007 336 REMARK 3 DIHEDRAL : 13.764 718 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 359:364) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1821 -50.1133 -28.6102 REMARK 3 T TENSOR REMARK 3 T11: 0.5910 T22: 0.8916 REMARK 3 T33: 0.8482 T12: 0.0888 REMARK 3 T13: 0.1000 T23: -0.3282 REMARK 3 L TENSOR REMARK 3 L11: 2.3917 L22: 3.3741 REMARK 3 L33: 3.6118 L12: -0.6696 REMARK 3 L13: 1.5387 L23: -3.3213 REMARK 3 S TENSOR REMARK 3 S11: 0.1481 S12: 0.8680 S13: -0.0517 REMARK 3 S21: -0.7214 S22: -0.0541 S23: -0.4789 REMARK 3 S31: 0.5761 S32: 0.3215 S33: 0.0504 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 365:373) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2836 -52.8763 -15.3071 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.4473 REMARK 3 T33: 0.7139 T12: -0.0028 REMARK 3 T13: -0.0186 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 6.8057 L22: 3.0277 REMARK 3 L33: 6.9377 L12: -0.2329 REMARK 3 L13: -1.9290 L23: 2.1534 REMARK 3 S TENSOR REMARK 3 S11: -0.1460 S12: 0.2623 S13: -1.1689 REMARK 3 S21: 0.2013 S22: -0.1566 S23: 0.4536 REMARK 3 S31: 0.7178 S32: -0.2105 S33: 0.2786 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 374:394) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7505 -40.9603 -21.3664 REMARK 3 T TENSOR REMARK 3 T11: 0.2929 T22: 0.5521 REMARK 3 T33: 0.3446 T12: -0.0422 REMARK 3 T13: 0.0022 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 3.2804 L22: 5.7584 REMARK 3 L33: 4.6355 L12: 0.6288 REMARK 3 L13: -0.2294 L23: -0.7340 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.7977 S13: -0.5200 REMARK 3 S21: -0.4089 S22: -0.0138 S23: 0.0245 REMARK 3 S31: 0.0692 S32: 0.3612 S33: 0.0338 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 395:401) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7655 -36.7188 -23.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.3217 T22: 0.7117 REMARK 3 T33: 0.4609 T12: -0.0896 REMARK 3 T13: 0.0470 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.8192 L22: 1.8172 REMARK 3 L33: 0.7694 L12: -0.0478 REMARK 3 L13: -0.0218 L23: 0.6366 REMARK 3 S TENSOR REMARK 3 S11: -0.4983 S12: 0.4828 S13: -0.0120 REMARK 3 S21: -0.1837 S22: 0.4412 S23: -0.4096 REMARK 3 S31: -0.2685 S32: 0.7001 S33: 0.0699 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 402:410) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7007 -27.8773 -24.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.6278 T22: 0.6336 REMARK 3 T33: 0.3924 T12: -0.1513 REMARK 3 T13: -0.0284 T23: 0.1286 REMARK 3 L TENSOR REMARK 3 L11: 7.6722 L22: 4.8148 REMARK 3 L33: 3.7658 L12: 4.7858 REMARK 3 L13: 2.8264 L23: 3.9952 REMARK 3 S TENSOR REMARK 3 S11: -0.3074 S12: 1.0465 S13: 0.7900 REMARK 3 S21: -1.2013 S22: 0.3823 S23: 0.3509 REMARK 3 S31: -1.1002 S32: 0.8083 S33: -0.1915 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 411:424) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0416 -27.3027 -20.9851 REMARK 3 T TENSOR REMARK 3 T11: 0.4636 T22: 0.8496 REMARK 3 T33: 0.4938 T12: -0.2777 REMARK 3 T13: 0.0642 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 6.3620 L22: 5.9765 REMARK 3 L33: 6.6800 L12: -1.9638 REMARK 3 L13: -1.3395 L23: 0.3802 REMARK 3 S TENSOR REMARK 3 S11: 0.2800 S12: -0.1832 S13: 1.2508 REMARK 3 S21: -0.5287 S22: 0.1491 S23: -0.6665 REMARK 3 S31: -0.7017 S32: 1.7075 S33: -0.4015 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 425:435) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8810 -45.7955 -28.6155 REMARK 3 T TENSOR REMARK 3 T11: 0.4826 T22: 0.8613 REMARK 3 T33: 0.4752 T12: -0.1099 REMARK 3 T13: 0.0803 T23: -0.1946 REMARK 3 L TENSOR REMARK 3 L11: 2.3663 L22: 7.8556 REMARK 3 L33: 5.9466 L12: -3.4566 REMARK 3 L13: 2.7561 L23: -1.2493 REMARK 3 S TENSOR REMARK 3 S11: -0.1929 S12: 1.2987 S13: -0.6551 REMARK 3 S21: -1.3165 S22: 0.2740 S23: 0.0229 REMARK 3 S31: 0.4358 S32: -0.0892 S33: 0.0092 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 2:28) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2163 -38.7265 -4.7373 REMARK 3 T TENSOR REMARK 3 T11: 0.2807 T22: 0.4325 REMARK 3 T33: 0.3573 T12: -0.0679 REMARK 3 T13: -0.0582 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.9514 L22: 5.4514 REMARK 3 L33: 4.8614 L12: 0.3043 REMARK 3 L13: -0.6538 L23: 0.3009 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.2260 S13: -0.0562 REMARK 3 S21: 0.2340 S22: -0.0814 S23: -0.3963 REMARK 3 S31: 0.2031 S32: 0.4621 S33: 0.1252 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 29:38) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8672 -31.2185 -0.1020 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.3523 REMARK 3 T33: 0.4118 T12: -0.0941 REMARK 3 T13: 0.0013 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.7595 L22: 4.1320 REMARK 3 L33: 7.7109 L12: 0.0003 REMARK 3 L13: 5.3413 L23: 0.6384 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: -0.8114 S13: -0.2277 REMARK 3 S21: 0.3266 S22: -0.3375 S23: 0.1564 REMARK 3 S31: 0.0823 S32: -0.4662 S33: 0.1237 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 39:55) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5591 -29.7541 8.5432 REMARK 3 T TENSOR REMARK 3 T11: 0.3762 T22: 0.4179 REMARK 3 T33: 0.4282 T12: -0.2030 REMARK 3 T13: -0.0229 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 4.9941 L22: 3.2592 REMARK 3 L33: 7.5258 L12: 0.4697 REMARK 3 L13: 2.6384 L23: -1.1766 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: -0.6226 S13: -0.4478 REMARK 3 S21: 0.4902 S22: -0.1506 S23: -0.0890 REMARK 3 S31: 0.0309 S32: 0.2070 S33: 0.0505 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 56:74) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3934 -24.5606 -3.3945 REMARK 3 T TENSOR REMARK 3 T11: 0.2815 T22: 0.3281 REMARK 3 T33: 0.3559 T12: -0.0889 REMARK 3 T13: -0.0035 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 4.2893 L22: 2.0430 REMARK 3 L33: 3.8197 L12: 1.5514 REMARK 3 L13: 2.2786 L23: 0.9050 REMARK 3 S TENSOR REMARK 3 S11: -0.1231 S12: -0.1890 S13: 0.7475 REMARK 3 S21: -0.1168 S22: -0.0963 S23: 0.1621 REMARK 3 S31: -0.6748 S32: 0.2113 S33: 0.3420 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 75:84) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7996 -18.6255 4.9878 REMARK 3 T TENSOR REMARK 3 T11: 0.3842 T22: 0.3764 REMARK 3 T33: 0.5380 T12: -0.0903 REMARK 3 T13: -0.0331 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 4.3834 L22: 3.6542 REMARK 3 L33: 5.4135 L12: 2.8364 REMARK 3 L13: 0.2080 L23: 1.1110 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: -0.1454 S13: 0.9777 REMARK 3 S21: 0.1961 S22: 0.1726 S23: -0.0669 REMARK 3 S31: -0.7073 S32: 0.3120 S33: -0.1868 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 85:98) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3748 -25.7887 -9.0010 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.5151 REMARK 3 T33: 0.3824 T12: -0.1303 REMARK 3 T13: -0.0019 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 4.6182 L22: 1.4307 REMARK 3 L33: 9.6612 L12: -0.7305 REMARK 3 L13: 0.6040 L23: 0.5121 REMARK 3 S TENSOR REMARK 3 S11: -0.2453 S12: 0.5768 S13: 0.1145 REMARK 3 S21: -0.7163 S22: 0.1543 S23: -0.7890 REMARK 3 S31: -1.0641 S32: 0.6197 S33: 0.1138 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 99:120) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1213 -26.0400 1.3107 REMARK 3 T TENSOR REMARK 3 T11: 0.3308 T22: 0.4241 REMARK 3 T33: 0.4533 T12: -0.1023 REMARK 3 T13: -0.0324 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 4.8923 L22: 5.0965 REMARK 3 L33: 2.6368 L12: 1.9868 REMARK 3 L13: 2.1366 L23: 1.8522 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.1995 S13: -0.1092 REMARK 3 S21: -0.0055 S22: 0.1168 S23: -1.0009 REMARK 3 S31: -0.1964 S32: 0.3175 S33: -0.0941 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 121:147) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3122 -20.3176 15.5586 REMARK 3 T TENSOR REMARK 3 T11: 0.5029 T22: 0.7138 REMARK 3 T33: 0.4485 T12: -0.2532 REMARK 3 T13: -0.0861 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 3.1529 L22: 2.5032 REMARK 3 L33: 3.1543 L12: 1.2108 REMARK 3 L13: 0.0434 L23: -1.1940 REMARK 3 S TENSOR REMARK 3 S11: 0.7522 S12: -1.2742 S13: 0.1958 REMARK 3 S21: 0.8745 S22: -0.6022 S23: -0.1974 REMARK 3 S31: -0.3749 S32: 0.2715 S33: -0.1136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CHAIN A RESIDUE 354-358 AND CHAIN B REMARK 3 RESIDUE 1 ARE DISORDERED. REMARK 4 REMARK 4 4A49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290049936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2ESK AND 1FBV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350 AND 0.2 M POTASSIUM REMARK 280 THIOCYANATE AT 18 DEGREES CELSIUS., TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.04800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.52400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.52400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.04800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K B1148 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 368 TO PHE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 352 REMARK 465 SER A 353 REMARK 465 GLU A 354 REMARK 465 PRO A 355 REMARK 465 THR A 356 REMARK 465 PRO A 357 REMARK 465 GLN A 358 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 386 -61.84 -128.29 REMARK 500 GLU A 386 -62.99 -127.70 REMARK 500 GLU A 412 -1.22 84.41 REMARK 500 PRO B 61 39.99 -93.33 REMARK 500 HIS B 75 137.42 -173.88 REMARK 500 ARG B 90 -84.81 -125.86 REMARK 500 ASN B 114 79.24 -115.16 REMARK 500 THR B 129 -61.54 -104.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1436 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 384 SG 108.4 REMARK 620 3 CYS A 401 SG 116.2 109.7 REMARK 620 4 CYS A 404 SG 115.5 105.0 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1437 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 396 SG REMARK 620 2 HIS A 398 ND1 84.7 REMARK 620 3 CYS A 416 SG 110.3 121.7 REMARK 620 4 CYS A 419 SG 108.2 114.3 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1148 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 7 ND1 REMARK 620 2 HIS B 7 ND1 89.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1148 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CBL RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF CBL IN COMPLEX WITH ITS BINDING SITE ON ZAP-70 REMARK 900 RELATED ID: 2Y1N RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR AUTOINHIBITION AND PHOSPHORYLATION- REMARK 900 DEPENDENTACTIVATION OF C-CBL: C-CBL-ZAP-70 PEPTIDE COMPLEX. REMARK 900 RELATED ID: 1W4U RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE UBIQUITIN CONJUGATING ENZYME UBCH5B REMARK 900 RELATED ID: 4A4B RELATED DB: PDB REMARK 900 STRUCTURE OF MODIFIED PHOSPHOTYR371-C-CBL-UBCH5B-ZAP- 70 COMPLEX REMARK 900 RELATED ID: 2ESQ RELATED DB: PDB REMARK 900 HUMAN UBIQUITIN-CONJUGATING ENZYME (E2) UBCH5B MUTANTSER94GLY REMARK 900 RELATED ID: 2C4O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN UBIQUITIN-CONJUGATING ENZYME UBCH5B REMARK 900 RELATED ID: 4A4C RELATED DB: PDB REMARK 900 STRUCTURE OF PHOSPHOTYR371-C-CBL-UBCH5B-ZAP-70 COMPLEX REMARK 900 RELATED ID: 2ESK RELATED DB: PDB REMARK 900 HUMAN UBIQUITIN-CONJUGATING ENZYME (E2) UBCH5B, WILD- TYPE REMARK 900 RELATED ID: 1UR6 RELATED DB: PDB REMARK 900 NMR BASED STRUCTURAL MODEL OF THE UBCH5B-CNOT4 COMPLEX REMARK 900 RELATED ID: 2Y1M RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR AUTOINHIBITION AND PHOSPHORYLATION- REMARK 900 DEPENDENTACTIVATION OF C-CBL: NATIVE C-CBL. REMARK 900 RELATED ID: 1B47 RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF CBL IN COMPLEX WITH ITS REMARK 900 BINDING SITE IN ZAP-70 REMARK 900 RELATED ID: 1FBV RELATED DB: PDB REMARK 900 STRUCTURE OF A CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION INUBIQUITIN- REMARK 900 PROTEIN LIGASES REMARK 900 RELATED ID: 2ESO RELATED DB: PDB REMARK 900 HUMAN UBIQUITIN-CONJUGATING ENZYME (E2) UBCH5B MUTANTILE37ALA REMARK 900 RELATED ID: 1YVH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-CBL TKB DOMAIN IN COMPLEX WITHTHE APS REMARK 900 PTYR-618 PHOSPHOPEPTIDE REMARK 900 RELATED ID: 2ESP RELATED DB: PDB REMARK 900 HUMAN UBIQUITIN-CONJUGATING ENZYME (E2) UBCH5B MUTANTILE88ALA REMARK 900 RELATED ID: 2CLW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN UBIQUITIN-CONJUGATING ENZYME UBCH5B REMARK 999 REMARK 999 SEQUENCE REMARK 999 Y368 IS MUTATED TO PHE. Y371 IS PHOSPHORYLATED. N-TERMINAL REMARK 999 GS IS RESULTED FROM CLONING AND TEV CLEAVAGE. DBREF 4A49 A 354 435 UNP P22681 CBL_HUMAN 354 435 DBREF 4A49 B 1 147 UNP P62837 UB2D2_HUMAN 1 147 SEQADV 4A49 GLY A 352 UNP P22681 EXPRESSION TAG SEQADV 4A49 SER A 353 UNP P22681 EXPRESSION TAG SEQADV 4A49 PHE A 368 UNP P22681 TYR 368 ENGINEERED MUTATION SEQRES 1 A 84 GLY SER GLU PRO THR PRO GLN ASP HIS ILE LYS VAL THR SEQRES 2 A 84 GLN GLU GLN PHE GLU LEU PTR CYS GLU MET GLY SER THR SEQRES 3 A 84 PHE GLN LEU CYS LYS ILE CYS ALA GLU ASN ASP LYS ASP SEQRES 4 A 84 VAL LYS ILE GLU PRO CYS GLY HIS LEU MET CYS THR SER SEQRES 5 A 84 CYS LEU THR SER TRP GLN GLU SER GLU GLY GLN GLY CYS SEQRES 6 A 84 PRO PHE CYS ARG CYS GLU ILE LYS GLY THR GLU PRO ILE SEQRES 7 A 84 VAL VAL ASP PRO PHE ASP SEQRES 1 B 147 MET ALA LEU LYS ARG ILE HIS LYS GLU LEU ASN ASP LEU SEQRES 2 B 147 ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY PRO VAL SEQRES 3 B 147 GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE MET GLY SEQRES 4 B 147 PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE PHE LEU SEQRES 5 B 147 THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS PRO PRO SEQRES 6 B 147 LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO ASN ILE SEQRES 7 B 147 ASN SER ASN GLY SER ILE CYS LEU ASP ILE LEU ARG SER SEQRES 8 B 147 GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL LEU LEU SEQRES 9 B 147 SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO ASP ASP SEQRES 10 B 147 PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS THR ASP SEQRES 11 B 147 ARG GLU LYS TYR ASN ARG ILE ALA ARG GLU TRP THR GLN SEQRES 12 B 147 LYS TYR ALA MET MODRES 4A49 PTR A 371 TYR MODIFIED RESIDUE HET PTR A 371 16 HET ZN A1436 1 HET ZN A1437 1 HET K B1148 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 3 ZN 2(ZN 2+) FORMUL 5 K K 1+ FORMUL 6 HOH *132(H2 O) HELIX 1 1 THR A 364 MET A 374 1 11 HELIX 2 2 CYS A 401 SER A 411 1 11 HELIX 3 3 ALA B 2 ASP B 16 1 15 HELIX 4 4 LEU B 86 ARG B 90 5 5 HELIX 5 5 THR B 98 ASP B 112 1 15 HELIX 6 6 VAL B 120 ASP B 130 1 11 HELIX 7 7 ASP B 130 ALA B 146 1 17 SHEET 1 AA 2 HIS A 360 LYS A 362 0 SHEET 2 AA 2 VAL A 430 ASP A 432 1 O VAL A 430 N ILE A 361 SHEET 1 AB 3 LEU A 399 MET A 400 0 SHEET 2 AB 3 VAL A 391 GLU A 394 -1 O VAL A 391 N MET A 400 SHEET 3 AB 3 GLY A 425 PRO A 428 -1 O GLY A 425 N GLU A 394 SHEET 1 BA 4 CYS B 21 VAL B 26 0 SHEET 2 BA 4 ASP B 29 MET B 38 -1 N ASP B 29 O VAL B 26 SHEET 3 BA 4 VAL B 49 HIS B 55 -1 O PHE B 50 N ILE B 37 SHEET 4 BA 4 LYS B 66 PHE B 69 -1 O LYS B 66 N HIS B 55 LINK C LEU A 370 N PTR A 371 1555 1555 1.33 LINK C PTR A 371 N CYS A 372 1555 1555 1.33 LINK SG CYS A 381 ZN ZN A1436 1555 1555 2.36 LINK SG CYS A 384 ZN ZN A1436 1555 1555 2.35 LINK SG CYS A 396 ZN ZN A1437 1555 1555 2.49 LINK ND1 HIS A 398 ZN ZN A1437 1555 1555 2.02 LINK SG CYS A 401 ZN ZN A1436 1555 1555 2.52 LINK SG CYS A 404 ZN ZN A1436 1555 1555 2.25 LINK SG CYS A 416 ZN ZN A1437 1555 1555 2.34 LINK SG CYS A 419 ZN ZN A1437 1555 1555 2.43 LINK ND1 HIS B 7 K K B1148 6554 1555 2.52 LINK ND1 HIS B 7 K K B1148 1555 1555 2.52 CISPEP 1 GLU A 394 PRO A 395 0 -4.51 CISPEP 2 TYR B 60 PRO B 61 0 -2.26 SITE 1 AC1 4 CYS A 381 CYS A 384 CYS A 401 CYS A 404 SITE 1 AC2 4 CYS A 396 HIS A 398 CYS A 416 CYS A 419 SITE 1 AC3 1 HIS B 7 CRYST1 115.877 115.877 52.572 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008630 0.004982 0.000000 0.00000 SCALE2 0.000000 0.009965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019022 0.00000