PDB Short entry for 4A5Z HEADER PROTEIN TRANSPORT 30-OCT-11 4A5Z TITLE STRUCTURES OF MITD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIT DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 90-243; COMPND 5 SYNONYM: MITD1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: POPTH KEYWDS PROTEIN TRANSPORT, ESCRT, CYTOKINESIS, MIDBODY EXPDTA X-RAY DIFFRACTION AUTHOR M.A.HADDERS,M.AGROMAYOR,A.CABALLE,T.OBITA,O.PERISIC,R.L.WILLIAMS, AUTHOR 2 J.MARTIN-SERRANO REVDAT 2 13-NOV-13 4A5Z 1 JRNL REMARK REVDAT 1 14-NOV-12 4A5Z 0 JRNL AUTH M.A.HADDERS,M.AGROMAYOR,T.OBITA,O.PERISIC,A.CABALLE,M.KLOC, JRNL AUTH 2 M.H.LAMERS,R.L.WILLIAMS,J.MARTIN-SERRANO JRNL TITL ESCRT-III BINDING PROTEIN MITD1 IS INVOLVED IN CYTOKINESIS JRNL TITL 2 AND HAS AN UNANTICIPATED PLD FOLD THAT BINDS MEMBRANES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 17424 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23045692 JRNL DOI 10.1073/PNAS.1206839109 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.1922 REMARK 3 R VALUE (WORKING SET) : 0.1906 REMARK 3 FREE R VALUE : 0.2219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.07 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2973 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1933 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2816 REMARK 3 BIN R VALUE (WORKING SET) : 0.1907 REMARK 3 BIN FREE R VALUE : 0.2375 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.28 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5273 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.0436 REMARK 3 B22 (A**2) : -1.9594 REMARK 3 B33 (A**2) : 2.0029 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : -1.2422 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.258 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9207 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.8940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5405 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 7287 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 1950 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 155 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 778 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5405 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.00 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 681 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5731 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.39 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.38 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -15.9058 -18.1494 47.5667 REMARK 3 T TENSOR REMARK 3 T11: -0.0496 T22: -0.0706 REMARK 3 T33: -0.0352 T12: -0.0093 REMARK 3 T13: 0.0043 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.2605 L22: 1.4817 REMARK 3 L33: 0.9643 L12: 0.3033 REMARK 3 L13: 0.3311 L23: 0.0850 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0222 S13: -0.0534 REMARK 3 S21: -0.0269 S22: 0.0033 S23: -0.0033 REMARK 3 S31: 0.1097 S32: -0.0023 S33: -0.0228 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 9.5110 3.3809 8.5515 REMARK 3 T TENSOR REMARK 3 T11: -0.0361 T22: -0.0362 REMARK 3 T33: -0.0495 T12: 0.0069 REMARK 3 T13: 0.0062 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8448 L22: 0.7625 REMARK 3 L33: 1.4885 L12: 0.1118 REMARK 3 L13: -0.2045 L23: 0.1262 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: -0.0258 S13: -0.0189 REMARK 3 S21: 0.0207 S22: -0.0218 S23: 0.0044 REMARK 3 S31: -0.1500 S32: -0.0513 S33: -0.0407 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 2.7661 3.1844 47.2926 REMARK 3 T TENSOR REMARK 3 T11: -0.0177 T22: -0.0636 REMARK 3 T33: -0.0469 T12: -0.0058 REMARK 3 T13: 0.0132 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.1291 L22: 0.7906 REMARK 3 L33: 1.1559 L12: 0.1695 REMARK 3 L13: -0.4520 L23: -0.0770 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.0279 S13: -0.0079 REMARK 3 S21: -0.0015 S22: -0.0029 S23: 0.0340 REMARK 3 S31: -0.0905 S32: 0.0451 S33: -0.0471 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 26.8126 -19.5791 8.7618 REMARK 3 T TENSOR REMARK 3 T11: -0.0713 T22: -0.0134 REMARK 3 T33: -0.0453 T12: 0.0066 REMARK 3 T13: 0.0062 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.6868 L22: 1.2691 REMARK 3 L33: 1.2392 L12: 0.0616 REMARK 3 L13: 0.2012 L23: -0.4779 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.0238 S13: -0.0479 REMARK 3 S21: -0.0176 S22: -0.0218 S23: 0.0160 REMARK 3 S31: 0.1429 S32: 0.0908 S33: 0.0262 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=DMS CL. NUMBER REMARK 3 OF ATOMS WITH PROPER CCP4 ATOM TYPE=5468. NUMBER WITH APPROX REMARK 3 DEFAULT CCP4 ATOM TYPE=4. NUMBER TREATED BY BAD NON-BONDED REMARK 3 CONTACTS=8. REMARK 4 REMARK 4 4A5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-11. REMARK 100 THE PDBE ID CODE IS EBI-50130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98050, 0.98070, 0.95000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 73.20 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 7.5 REMARK 200 R MERGE (I) : 0.17 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.4 REMARK 200 R MERGE FOR SHELL (I) : 0.63 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.5 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 100 MM BISTRIS REMARK 280 PH6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.70500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 90 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 243 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LYS 90 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LYS 243 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN C, LYS 90 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN C, LYS 243 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN D, LYS 90 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN D, LYS 243 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 81 REMARK 465 ALA A 82 REMARK 465 HIS A 83 REMARK 465 HIS A 84 REMARK 465 HIS A 85 REMARK 465 HIS A 86 REMARK 465 ARG A 144 REMARK 465 PRO A 145 REMARK 465 MSE B 81 REMARK 465 ALA B 82 REMARK 465 HIS B 83 REMARK 465 HIS B 84 REMARK 465 ARG B 144 REMARK 465 PRO B 145 REMARK 465 MSE C 81 REMARK 465 ALA C 82 REMARK 465 HIS C 83 REMARK 465 HIS C 84 REMARK 465 HIS C 85 REMARK 465 HIS C 86 REMARK 465 ARG C 144 REMARK 465 PRO C 145 REMARK 465 MSE D 81 REMARK 465 ALA D 82 REMARK 465 HIS D 83 REMARK 465 HIS D 84 REMARK 465 ARG D 144 REMARK 465 PRO D 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 124 75.05 -119.72 REMARK 500 ARG A 126 -46.05 -134.12 REMARK 500 HIS B 86 -81.59 172.41 REMARK 500 TYR B 124 64.94 -112.53 REMARK 500 ILE B 125 71.86 -117.94 REMARK 500 ARG B 126 -55.83 -120.36 REMARK 500 HIS B 193 -31.07 -131.23 REMARK 500 TYR C 124 65.73 -110.62 REMARK 500 ILE C 125 66.87 -118.97 REMARK 500 HIS D 86 -101.32 -146.93 REMARK 500 HIS D 87 120.58 -38.71 REMARK 500 TYR D 124 64.20 -109.34 REMARK 500 ILE D 125 66.43 -116.95 REMARK 500 HIS D 193 -31.63 -131.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 192 24.4 L L OUTSIDE RANGE REMARK 500 PHE A 228 24.9 L L OUTSIDE RANGE REMARK 500 PHE D 228 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A1244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D1244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C1244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1245 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A5X RELATED DB: PDB REMARK 900 STRUCTURES OF MITD1 DBREF 4A5Z A 90 243 UNP Q8WV92 MITD1_HUMAN 90 243 DBREF 4A5Z B 90 243 UNP Q8WV92 MITD1_HUMAN 90 243 DBREF 4A5Z C 90 243 UNP Q8WV92 MITD1_HUMAN 90 243 DBREF 4A5Z D 90 243 UNP Q8WV92 MITD1_HUMAN 90 243 SEQADV 4A5Z MSE A 81 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z ALA A 82 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS A 83 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS A 84 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS A 85 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS A 86 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS A 87 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS A 88 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z MSE A 89 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z ASP A 90 UNP Q8WV92 LYS 90 ENGINEERED MUTATION SEQADV 4A5Z ASP A 243 UNP Q8WV92 LYS 243 ENGINEERED MUTATION SEQADV 4A5Z MSE B 81 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z ALA B 82 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS B 83 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS B 84 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS B 85 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS B 86 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS B 87 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS B 88 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z MSE B 89 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z ASP B 90 UNP Q8WV92 LYS 90 ENGINEERED MUTATION SEQADV 4A5Z ASP B 243 UNP Q8WV92 LYS 243 ENGINEERED MUTATION SEQADV 4A5Z MSE C 81 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z ALA C 82 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS C 83 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS C 84 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS C 85 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS C 86 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS C 87 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS C 88 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z MSE C 89 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z ASP C 90 UNP Q8WV92 LYS 90 ENGINEERED MUTATION SEQADV 4A5Z ASP C 243 UNP Q8WV92 LYS 243 ENGINEERED MUTATION SEQADV 4A5Z MSE D 81 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z ALA D 82 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS D 83 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS D 84 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS D 85 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS D 86 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS D 87 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z HIS D 88 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z MSE D 89 UNP Q8WV92 EXPRESSION TAG SEQADV 4A5Z ASP D 90 UNP Q8WV92 LYS 90 ENGINEERED MUTATION SEQADV 4A5Z ASP D 243 UNP Q8WV92 LYS 243 ENGINEERED MUTATION SEQRES 1 A 163 MSE ALA HIS HIS HIS HIS HIS HIS MSE ASP GLN ILE LYS SEQRES 2 A 163 ILE GLU GLU ASN ALA THR GLY PHE SER TYR GLU SER LEU SEQRES 3 A 163 PHE ARG GLU TYR LEU ASN GLU THR VAL THR GLU VAL TRP SEQRES 4 A 163 ILE GLU ASP PRO TYR ILE ARG HIS THR HIS GLN LEU TYR SEQRES 5 A 163 ASN PHE LEU ARG PHE CYS GLU MSE LEU ILE LYS ARG PRO SEQRES 6 A 163 CYS LYS VAL LYS THR ILE HIS LEU LEU THR SER LEU ASP SEQRES 7 A 163 GLU GLY ILE GLU GLN VAL GLN GLN SER ARG GLY LEU GLN SEQRES 8 A 163 GLU ILE GLU GLU SER LEU ARG SER HIS GLY VAL LEU LEU SEQRES 9 A 163 GLU VAL GLN TYR SER SER SER ILE HIS ASP ARG GLU ILE SEQRES 10 A 163 ARG PHE ASN ASN GLY TRP MSE ILE LYS ILE GLY ARG GLY SEQRES 11 A 163 LEU ASP TYR PHE LYS LYS PRO GLN SER ARG PHE SER LEU SEQRES 12 A 163 GLY TYR CYS ASP PHE ASP LEU ARG PRO CYS HIS GLU THR SEQRES 13 A 163 THR VAL ASP ILE PHE HIS ASP SEQRES 1 B 163 MSE ALA HIS HIS HIS HIS HIS HIS MSE ASP GLN ILE LYS SEQRES 2 B 163 ILE GLU GLU ASN ALA THR GLY PHE SER TYR GLU SER LEU SEQRES 3 B 163 PHE ARG GLU TYR LEU ASN GLU THR VAL THR GLU VAL TRP SEQRES 4 B 163 ILE GLU ASP PRO TYR ILE ARG HIS THR HIS GLN LEU TYR SEQRES 5 B 163 ASN PHE LEU ARG PHE CYS GLU MSE LEU ILE LYS ARG PRO SEQRES 6 B 163 CYS LYS VAL LYS THR ILE HIS LEU LEU THR SER LEU ASP SEQRES 7 B 163 GLU GLY ILE GLU GLN VAL GLN GLN SER ARG GLY LEU GLN SEQRES 8 B 163 GLU ILE GLU GLU SER LEU ARG SER HIS GLY VAL LEU LEU SEQRES 9 B 163 GLU VAL GLN TYR SER SER SER ILE HIS ASP ARG GLU ILE SEQRES 10 B 163 ARG PHE ASN ASN GLY TRP MSE ILE LYS ILE GLY ARG GLY SEQRES 11 B 163 LEU ASP TYR PHE LYS LYS PRO GLN SER ARG PHE SER LEU SEQRES 12 B 163 GLY TYR CYS ASP PHE ASP LEU ARG PRO CYS HIS GLU THR SEQRES 13 B 163 THR VAL ASP ILE PHE HIS ASP SEQRES 1 C 163 MSE ALA HIS HIS HIS HIS HIS HIS MSE ASP GLN ILE LYS SEQRES 2 C 163 ILE GLU GLU ASN ALA THR GLY PHE SER TYR GLU SER LEU SEQRES 3 C 163 PHE ARG GLU TYR LEU ASN GLU THR VAL THR GLU VAL TRP SEQRES 4 C 163 ILE GLU ASP PRO TYR ILE ARG HIS THR HIS GLN LEU TYR SEQRES 5 C 163 ASN PHE LEU ARG PHE CYS GLU MSE LEU ILE LYS ARG PRO SEQRES 6 C 163 CYS LYS VAL LYS THR ILE HIS LEU LEU THR SER LEU ASP SEQRES 7 C 163 GLU GLY ILE GLU GLN VAL GLN GLN SER ARG GLY LEU GLN SEQRES 8 C 163 GLU ILE GLU GLU SER LEU ARG SER HIS GLY VAL LEU LEU SEQRES 9 C 163 GLU VAL GLN TYR SER SER SER ILE HIS ASP ARG GLU ILE SEQRES 10 C 163 ARG PHE ASN ASN GLY TRP MSE ILE LYS ILE GLY ARG GLY SEQRES 11 C 163 LEU ASP TYR PHE LYS LYS PRO GLN SER ARG PHE SER LEU SEQRES 12 C 163 GLY TYR CYS ASP PHE ASP LEU ARG PRO CYS HIS GLU THR SEQRES 13 C 163 THR VAL ASP ILE PHE HIS ASP SEQRES 1 D 163 MSE ALA HIS HIS HIS HIS HIS HIS MSE ASP GLN ILE LYS SEQRES 2 D 163 ILE GLU GLU ASN ALA THR GLY PHE SER TYR GLU SER LEU SEQRES 3 D 163 PHE ARG GLU TYR LEU ASN GLU THR VAL THR GLU VAL TRP SEQRES 4 D 163 ILE GLU ASP PRO TYR ILE ARG HIS THR HIS GLN LEU TYR SEQRES 5 D 163 ASN PHE LEU ARG PHE CYS GLU MSE LEU ILE LYS ARG PRO SEQRES 6 D 163 CYS LYS VAL LYS THR ILE HIS LEU LEU THR SER LEU ASP SEQRES 7 D 163 GLU GLY ILE GLU GLN VAL GLN GLN SER ARG GLY LEU GLN SEQRES 8 D 163 GLU ILE GLU GLU SER LEU ARG SER HIS GLY VAL LEU LEU SEQRES 9 D 163 GLU VAL GLN TYR SER SER SER ILE HIS ASP ARG GLU ILE SEQRES 10 D 163 ARG PHE ASN ASN GLY TRP MSE ILE LYS ILE GLY ARG GLY SEQRES 11 D 163 LEU ASP TYR PHE LYS LYS PRO GLN SER ARG PHE SER LEU SEQRES 12 D 163 GLY TYR CYS ASP PHE ASP LEU ARG PRO CYS HIS GLU THR SEQRES 13 D 163 THR VAL ASP ILE PHE HIS ASP MODRES 4A5Z MSE A 89 MET SELENOMETHIONINE MODRES 4A5Z MSE A 140 MET SELENOMETHIONINE MODRES 4A5Z MSE A 204 MET SELENOMETHIONINE MODRES 4A5Z MSE B 89 MET SELENOMETHIONINE MODRES 4A5Z MSE B 140 MET SELENOMETHIONINE MODRES 4A5Z MSE B 204 MET SELENOMETHIONINE MODRES 4A5Z MSE C 89 MET SELENOMETHIONINE MODRES 4A5Z MSE C 140 MET SELENOMETHIONINE MODRES 4A5Z MSE C 204 MET SELENOMETHIONINE MODRES 4A5Z MSE D 89 MET SELENOMETHIONINE MODRES 4A5Z MSE D 140 MET SELENOMETHIONINE MODRES 4A5Z MSE D 204 MET SELENOMETHIONINE HET MSE A 89 8 HET MSE A 140 8 HET MSE A 204 8 HET MSE B 89 8 HET MSE B 140 8 HET MSE B 204 8 HET MSE C 89 8 HET MSE C 140 8 HET MSE C 204 8 HET MSE D 89 8 HET MSE D 140 8 HET MSE D 204 8 HET DMS A1244 4 HET CL A1245 1 HET CL A1246 1 HET CL B1244 1 HET CL B1245 1 HET CL C1244 1 HET CL C1245 1 HET CL C1246 1 HET CL D1244 1 HETNAM MSE SELENOMETHIONINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 DMS C2 H6 O S FORMUL 3 CL 8(CL 1-) FORMUL 4 HOH *194(H2 O) HELIX 1 1 SER A 102 ARG A 108 1 7 HELIX 2 2 GLU A 109 LEU A 111 5 3 HELIX 3 3 HIS A 127 LYS A 143 1 17 HELIX 4 4 GLU A 162 HIS A 180 1 19 HELIX 5 5 ASP A 227 ARG A 231 5 5 HELIX 6 6 SER B 102 ARG B 108 1 7 HELIX 7 7 GLU B 109 LEU B 111 5 3 HELIX 8 8 HIS B 127 LYS B 143 1 17 HELIX 9 9 ILE B 161 HIS B 180 1 20 HELIX 10 10 ASP B 227 ARG B 231 5 5 HELIX 11 11 SER C 102 ARG C 108 1 7 HELIX 12 12 GLU C 109 LEU C 111 5 3 HELIX 13 13 HIS C 127 LYS C 143 1 17 HELIX 14 14 GLU C 162 HIS C 180 1 19 HELIX 15 15 SER D 102 ARG D 108 1 7 HELIX 16 16 HIS D 127 LYS D 143 1 17 HELIX 17 17 ILE D 161 HIS D 180 1 20 HELIX 18 18 ASP D 227 ARG D 231 5 5 SHEET 1 AA 7 HIS A 88 ILE A 94 0 SHEET 2 AA 7 THR A 236 HIS A 242 -1 O THR A 236 N ILE A 94 SHEET 3 AA 7 TRP A 203 ILE A 207 -1 O MSE A 204 N PHE A 241 SHEET 4 AA 7 GLU A 196 PHE A 199 -1 O ILE A 197 N ILE A 205 SHEET 5 AA 7 GLU A 117 GLU A 121 -1 O TRP A 119 N ARG A 198 SHEET 6 AA 7 THR A 150 THR A 155 1 O THR A 150 N VAL A 118 SHEET 7 AA 7 LEU A 183 TYR A 188 1 O LEU A 183 N ILE A 151 SHEET 1 BA 7 HIS B 87 ILE B 94 0 SHEET 2 BA 7 THR B 236 HIS B 242 -1 O THR B 236 N ILE B 94 SHEET 3 BA 7 TRP B 203 ILE B 207 -1 O MSE B 204 N PHE B 241 SHEET 4 BA 7 GLU B 196 PHE B 199 -1 O ILE B 197 N ILE B 205 SHEET 5 BA 7 GLU B 117 GLU B 121 -1 O TRP B 119 N ARG B 198 SHEET 6 BA 7 THR B 150 THR B 155 1 O THR B 150 N VAL B 118 SHEET 7 BA 7 LEU B 183 TYR B 188 1 O LEU B 183 N ILE B 151 SHEET 1 CA 7 HIS C 88 ILE C 94 0 SHEET 2 CA 7 THR C 236 HIS C 242 -1 O THR C 236 N ILE C 94 SHEET 3 CA 7 TRP C 203 ILE C 207 -1 O MSE C 204 N PHE C 241 SHEET 4 CA 7 GLU C 196 PHE C 199 -1 O ILE C 197 N ILE C 205 SHEET 5 CA 7 GLU C 117 GLU C 121 -1 O TRP C 119 N ARG C 198 SHEET 6 CA 7 THR C 150 THR C 155 1 O THR C 150 N VAL C 118 SHEET 7 CA 7 LEU C 183 TYR C 188 1 O LEU C 183 N ILE C 151 SHEET 1 DA 7 HIS D 87 ILE D 94 0 SHEET 2 DA 7 THR D 236 HIS D 242 -1 O THR D 236 N ILE D 94 SHEET 3 DA 7 TRP D 203 ILE D 207 -1 O MSE D 204 N PHE D 241 SHEET 4 DA 7 GLU D 196 PHE D 199 -1 O ILE D 197 N ILE D 205 SHEET 5 DA 7 GLU D 117 GLU D 121 -1 O TRP D 119 N ARG D 198 SHEET 6 DA 7 THR D 150 THR D 155 1 O THR D 150 N VAL D 118 SHEET 7 DA 7 LEU D 183 TYR D 188 1 O LEU D 183 N ILE D 151 LINK N MSE A 89 C HIS A 88 1555 1555 1.33 LINK C MSE A 89 N ASP A 90 1555 1555 1.33 LINK N MSE A 140 C GLU A 139 1555 1555 1.35 LINK C MSE A 140 N LEU A 141 1555 1555 1.34 LINK N MSE A 204 C TRP A 203 1555 1555 1.34 LINK C MSE A 204 N ILE A 205 1555 1555 1.35 LINK N MSE B 89 C HIS B 88 1555 1555 1.32 LINK C MSE B 89 N ASP B 90 1555 1555 1.34 LINK N MSE B 140 C GLU B 139 1555 1555 1.36 LINK C MSE B 140 N LEU B 141 1555 1555 1.33 LINK N MSE B 204 C TRP B 203 1555 1555 1.34 LINK C MSE B 204 N ILE B 205 1555 1555 1.35 LINK C MSE C 89 N ASP C 90 1555 1555 1.33 LINK N MSE C 89 C HIS C 88 1555 1555 1.32 LINK C MSE C 140 N LEU C 141 1555 1555 1.32 LINK N MSE C 140 C GLU C 139 1555 1555 1.36 LINK C MSE C 204 N ILE C 205 1555 1555 1.33 LINK N MSE C 204 C TRP C 203 1555 1555 1.34 LINK C MSE D 89 N ASP D 90 1555 1555 1.35 LINK N MSE D 89 C HIS D 88 1555 1555 1.32 LINK C MSE D 140 N LEU D 141 1555 1555 1.35 LINK N MSE D 140 C GLU D 139 1555 1555 1.34 LINK C MSE D 204 N ILE D 205 1555 1555 1.33 LINK N MSE D 204 C TRP D 203 1555 1555 1.35 SITE 1 AC1 6 GLN A 165 HOH A2019 ARG B 168 GLN B 171 SITE 2 AC1 6 GLU B 172 ARG C 220 SITE 1 AC2 5 SER D 102 TYR D 103 ARG D 136 PHE D 228 SITE 2 AC2 5 HOH D2006 SITE 1 AC3 4 SER B 102 TYR B 103 ARG B 136 PHE B 228 SITE 1 AC4 3 TYR C 103 ARG C 136 PHE C 228 SITE 1 AC5 2 ILE B 161 ARG C 231 SITE 1 AC6 4 SER A 102 TYR A 103 ARG A 136 PHE A 228 SITE 1 AC7 2 TRP B 203 TRP C 203 SITE 1 AC8 2 ARG A 231 HOH A2021 SITE 1 AC9 3 ARG B 231 HOH B2022 ILE C 161 CRYST1 50.020 109.410 74.460 90.00 100.55 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019992 0.000000 0.003723 0.00000 SCALE2 0.000000 0.009140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013661 0.00000 MTRIX1 1 -1.000000 0.004000 0.010000 -13.74559 1 MTRIX2 1 -0.004000 -0.999000 0.032000 -16.47846 1 MTRIX3 1 0.010000 0.032000 0.999000 0.13176 1 MTRIX1 2 0.998000 -0.056000 -0.021000 -25.29097 1 MTRIX2 2 -0.057000 -0.998000 -0.026000 -14.22210 1 MTRIX3 2 -0.020000 0.027000 -0.999000 55.96533 1 MTRIX1 3 -0.997000 0.075000 -0.006000 12.11552 1 MTRIX2 3 0.075000 0.995000 -0.066000 -0.27307 1 MTRIX3 3 0.001000 -0.066000 -0.998000 54.74832 1