PDB Short entry for 4A9K HEADER SIGNALING PROTEIN 26-NOV-11 4A9K TITLE BROMODOMAIN OF HUMAN CREBBP WITH N-(4-HYDROXYPHENYL)ACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN, RESIDUES 1081-1197; COMPND 5 SYNONYM: HUMAN CREBBP; COMPND 6 EC: 2.3.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, HISTONE, EPIGENETIC READER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.W.CHUNG,P.BAMBOROUGH REVDAT 3 03-APR-19 4A9K 1 REMARK REVDAT 2 08-FEB-12 4A9K 1 JRNL REMARK MASTER REVDAT 1 11-JAN-12 4A9K 0 JRNL AUTH C.W.CHUNG,A.W.DEAN,J.M.WOOLVEN,P.BAMBOROUGH JRNL TITL FRAGMENT-BASED DISCOVERY OF BROMODOMAIN INHIBITORS PART 1: JRNL TITL 2 INHIBITOR BINDING MODES AND IMPLICATIONS FOR LEAD DISCOVERY. JRNL REF J.MED.CHEM. V. 55 576 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22136404 JRNL DOI 10.1021/JM201320W REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 18998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.1880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -0.88000 REMARK 3 B33 (A**2) : 1.32000 REMARK 3 B12 (A**2) : -0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.586 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1997 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1402 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2710 ; 0.999 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3403 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 4.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;36.772 ;24.369 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;12.330 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2178 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 414 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1160 ; 0.571 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 440 ; 0.068 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1895 ; 1.117 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 837 ; 1.307 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 814 ; 2.198 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1083 A 1197 REMARK 3 ORIGIN FOR THE GROUP (A): -24.3582 17.0214 -5.8507 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: 0.0170 REMARK 3 T33: 0.0439 T12: -0.0043 REMARK 3 T13: 0.0017 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.4908 L22: 1.5669 REMARK 3 L33: 0.8288 L12: -0.0867 REMARK 3 L13: 0.1598 L23: 0.3214 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.0251 S13: -0.0750 REMARK 3 S21: -0.0294 S22: -0.0151 S23: 0.1473 REMARK 3 S31: 0.0566 S32: -0.0094 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1085 B 1196 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4805 -7.5301 -1.6754 REMARK 3 T TENSOR REMARK 3 T11: 0.0595 T22: 0.0110 REMARK 3 T33: 0.0081 T12: -0.0077 REMARK 3 T13: -0.0122 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.2959 L22: 2.0572 REMARK 3 L33: 1.4945 L12: 0.0982 REMARK 3 L13: 0.3093 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.0329 S13: 0.0601 REMARK 3 S21: -0.0127 S22: -0.0139 S23: 0.0484 REMARK 3 S31: -0.1052 S32: 0.0863 S33: 0.0684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM KSCN, 20% PEG 3350, 4 DEGREES REMARK 280 CELSIUS., TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.47150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.91324 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.49033 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 60.47150 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.91324 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.49033 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 60.47150 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.91324 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.49033 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.82647 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.98067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.82647 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.98067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.82647 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.98067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1079 REMARK 465 MET A 1080 REMARK 465 ARG A 1081 REMARK 465 LYS A 1082 REMARK 465 SER B 1079 REMARK 465 MET B 1080 REMARK 465 ARG B 1081 REMARK 465 LYS B 1082 REMARK 465 LYS B 1083 REMARK 465 ILE B 1084 REMARK 465 GLY B 1197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1083 CG CD CE NZ REMARK 470 ILE A1084 CG1 CG2 CD1 REMARK 470 GLN A1194 CG CD OE1 NE2 REMARK 470 LYS B1086 CG CD CE NZ REMARK 470 GLU B1089 CG CD OE1 OE2 REMARK 470 GLN B1194 CG CD OE1 NE2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B2197 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2098 O REMARK 620 2 HOH B2011 O 94.8 REMARK 620 3 TRP B1165 O 101.0 157.0 REMARK 620 4 LEU B1166 O 156.6 97.4 74.2 REMARK 620 5 ASN B1168 O 109.0 85.8 73.3 91.8 REMARK 620 6 HOH B2012 O 76.5 113.7 86.4 80.3 159.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 2197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYL A 2200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYL B 2198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 2201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WO5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DESIGNED FUNCTIONAL FINGER 2 (DFF2 ):DESIGNED REMARK 900 MUTANT BASED ON NON-NATIVE CHANCE DOMAIN REMARK 900 RELATED ID: 1WO4 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF MINIMAL MUTANT 2 (MM2): MULTIPLEALANINE REMARK 900 MUTANT OF NON-NATIVE CHANCE DOMAIN REMARK 900 RELATED ID: 1WO3 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF MINIMAL MUTANT 1 (MM1): MULTIPLEALANINE REMARK 900 MUTANT OF NON-NATIVE CHANCE DOMAIN REMARK 900 RELATED ID: 1JSP RELATED DB: PDB REMARK 900 NMR STRUCTURE OF CBP BROMODOMAIN IN COMPLEX WITH P53 PEPTIDE REMARK 900 RELATED ID: 1LIQ RELATED DB: PDB REMARK 900 NON-NATIVE SOLUTION STRUCTURE OF A FRAGMENT OF THE CH1DOMAIN OF CBP REMARK 900 RELATED ID: 1WO7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DESIGNED FUNCTIONAL FINGER 7 (DFF7 ):DESIGNED REMARK 900 MUTANT BASED ON NON-NATIVE CHANCE DOMAIN REMARK 900 RELATED ID: 2D82 RELATED DB: PDB REMARK 900 TARGET STRUCTURE-BASED DISCOVERY OF SMALL MOLECULES THATBLOCK HUMAN REMARK 900 P53 AND CREB BINDING PROTEIN (CBP) ASSOCIATION REMARK 900 RELATED ID: 1WO6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DESIGNED FUNCTIONAL FINGER 5 (DFF5 ):DESIGNED REMARK 900 MUTANT BASED ON NON-NATIVE CHANCE DOMAIN DBREF 4A9K A 1081 1197 UNP Q92793 CBP_HUMAN 1081 1197 DBREF 4A9K B 1081 1197 UNP Q92793 CBP_HUMAN 1081 1197 SEQADV 4A9K SER A 1079 UNP Q92793 EXPRESSION TAG SEQADV 4A9K MET A 1080 UNP Q92793 EXPRESSION TAG SEQADV 4A9K SER B 1079 UNP Q92793 EXPRESSION TAG SEQADV 4A9K MET B 1080 UNP Q92793 EXPRESSION TAG SEQRES 1 A 119 SER MET ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG SEQRES 2 A 119 GLN ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN SEQRES 3 A 119 ASP PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO SEQRES 4 A 119 GLN LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SEQRES 5 A 119 ASN PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP SEQRES 6 A 119 THR GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP SEQRES 7 A 119 VAL TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG SEQRES 8 A 119 LYS THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA SEQRES 9 A 119 GLU VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER SEQRES 10 A 119 LEU GLY SEQRES 1 B 119 SER MET ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG SEQRES 2 B 119 GLN ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN SEQRES 3 B 119 ASP PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO SEQRES 4 B 119 GLN LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SEQRES 5 B 119 ASN PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP SEQRES 6 B 119 THR GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP SEQRES 7 B 119 VAL TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG SEQRES 8 B 119 LYS THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA SEQRES 9 B 119 GLU VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER SEQRES 10 B 119 LEU GLY HET EDO A2198 4 HET EDO A2199 4 HET TYL A2200 11 HET SCN A2201 3 HET K B2197 1 HET TYL B2198 11 HETNAM EDO 1,2-ETHANEDIOL HETNAM TYL N-(4-HYDROXYPHENYL)ACETAMIDE (TYLENOL) HETNAM SCN THIOCYANATE ION HETNAM K POTASSIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 TYL 2(C8 H9 N O2) FORMUL 6 SCN C N S 1- FORMUL 7 K K 1+ FORMUL 9 HOH *267(H2 O) HELIX 1 1 LYS A 1086 ARG A 1103 1 18 HELIX 2 2 SER A 1108 ARG A 1112 5 5 HELIX 3 3 ASP A 1116 GLY A 1121 1 6 HELIX 4 4 ASP A 1124 VAL A 1129 1 6 HELIX 5 5 ASP A 1134 THR A 1144 1 11 HELIX 6 6 GLU A 1149 ASN A 1168 1 20 HELIX 7 7 SER A 1172 GLY A 1197 1 26 HELIX 8 8 LYS B 1086 GLN B 1104 1 19 HELIX 9 9 SER B 1108 ARG B 1112 5 5 HELIX 10 10 ASP B 1116 GLY B 1121 1 6 HELIX 11 11 ASP B 1124 VAL B 1129 1 6 HELIX 12 12 ASP B 1134 THR B 1144 1 11 HELIX 13 13 GLU B 1149 ASN B 1168 1 20 HELIX 14 14 SER B 1172 LEU B 1196 1 25 LINK K K B2197 O HOH B2098 1555 1555 3.04 LINK K K B2197 O HOH B2011 1555 1555 2.75 LINK K K B2197 O TRP B1165 1555 1555 2.77 LINK K K B2197 O LEU B1166 1555 1555 3.02 LINK K K B2197 O ASN B1168 1555 1555 2.79 LINK K K B2197 O HOH B2012 1555 1555 2.79 CISPEP 1 ASP A 1105 PRO A 1106 0 11.68 CISPEP 2 ASP B 1105 PRO B 1106 0 11.58 SITE 1 AC1 2 TRP A1165 TYR A1175 SITE 1 AC2 6 PRO A1117 GLN A1118 GLY A1121 ILE A1122 SITE 2 AC2 6 PRO A1123 HOH A2148 SITE 1 AC3 6 TRP B1165 LEU B1166 ASN B1168 HOH B2011 SITE 2 AC3 6 HOH B2012 HOH B2098 SITE 1 AC4 10 PHE A1111 VAL A1115 ILE A1122 TYR A1167 SITE 2 AC4 10 ASN A1168 VAL A1174 HOH A2051 HOH A2067 SITE 3 AC4 10 HOH A2149 HOH A2150 SITE 1 AC5 6 VAL B1115 ASN B1168 VAL B1174 HOH B2040 SITE 2 AC5 6 HOH B2058 HOH B2117 SITE 1 AC6 4 ARG A1173 HOH A2126 PRO B1106 ARG B1173 CRYST1 120.943 120.943 40.471 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008268 0.004774 0.000000 0.00000 SCALE2 0.000000 0.009547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024709 0.00000