PDB Short entry for 4AAE HEADER HYDROLASE/DNA 01-DEC-11 4AAE TITLE CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN ALTERED TITLE 2 TARGET (THE FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED BY AGCG FROM TITLE 3 5' TO 3') COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ENDONUCLEASE I-CREI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: I-CREI, 23S RRNA INTRON PROTEIN; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 24MER DNA; COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 24MER DNA; COMPND 14 CHAIN: G; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: CDFDUET1, PET24D; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-DNA COMPLEX, GENE TARGETING, PROTEIN-DNA INTERACTION, KEYWDS 2 HOMING ENDONUCLEASES EXPDTA X-RAY DIFFRACTION AUTHOR R.MOLINA,P.REDONDO,S.STELLA,M.MARENCHINO,M.D'ABRAMO,F.L.GERVASIO, AUTHOR 2 J.C.EPINAT,J.VALTON,S.GRIZOT,P.DUCHATEAU,J.PRIETO,G.MONTOYA REVDAT 3 20-DEC-23 4AAE 1 JRNL REVDAT 2 22-AUG-12 4AAE 1 JRNL REMARK REVDAT 1 02-MAY-12 4AAE 0 JRNL AUTH R.MOLINA,P.REDONDO,S.STELLA,M.MARENCHINO,M.D'ABRAMO, JRNL AUTH 2 F.L.GERVASIO,J.CHARLES EPINAT,J.VALTON,S.GRIZOT,P.DUCHATEAU, JRNL AUTH 3 J.PRIETO,G.MONTOYA JRNL TITL NON-SPECIFIC PROTEIN-DNA INTERACTIONS CONTROL I-CREI TARGET JRNL TITL 2 BINDING AND CLEAVAGE. JRNL REF NUCLEIC ACIDS RES. V. 40 6936 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22495931 JRNL DOI 10.1093/NAR/GKS320 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 18626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.4974 - 6.1112 0.91 1314 147 0.1891 0.2006 REMARK 3 2 6.1112 - 4.8516 0.97 1329 147 0.1577 0.2119 REMARK 3 3 4.8516 - 4.2386 0.97 1305 146 0.1354 0.1904 REMARK 3 4 4.2386 - 3.8512 0.99 1305 144 0.1439 0.2147 REMARK 3 5 3.8512 - 3.5752 0.99 1302 145 0.1695 0.2496 REMARK 3 6 3.5752 - 3.3644 0.99 1314 145 0.1654 0.2487 REMARK 3 7 3.3644 - 3.1960 0.97 1255 140 0.1794 0.2482 REMARK 3 8 3.1960 - 3.0568 0.98 1274 142 0.1879 0.2750 REMARK 3 9 3.0568 - 2.9392 0.98 1287 143 0.2019 0.3085 REMARK 3 10 2.9392 - 2.8378 0.99 1288 143 0.2007 0.2747 REMARK 3 11 2.8378 - 2.7490 0.97 1241 138 0.2246 0.3248 REMARK 3 12 2.7490 - 2.6705 0.98 1288 143 0.2347 0.3333 REMARK 3 13 2.6705 - 2.6002 0.98 1261 140 0.2298 0.3045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 31.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.670 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.76230 REMARK 3 B22 (A**2) : -12.43780 REMARK 3 B33 (A**2) : 3.67540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3620 REMARK 3 ANGLE : 1.262 5096 REMARK 3 CHIRALITY : 0.068 581 REMARK 3 PLANARITY : 0.004 477 REMARK 3 DIHEDRAL : 22.961 1426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -12.0278 -8.6733 23.8832 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.2844 REMARK 3 T33: 0.1917 T12: 0.0126 REMARK 3 T13: -0.0307 T23: -0.0819 REMARK 3 L TENSOR REMARK 3 L11: 0.6506 L22: 1.7058 REMARK 3 L33: 0.8591 L12: 0.4950 REMARK 3 L13: 0.3136 L23: 0.6390 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0007 S13: -0.0083 REMARK 3 S21: -0.0386 S22: -0.1837 S23: 0.0448 REMARK 3 S31: -0.0218 S32: -0.0010 S33: 0.1479 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18671 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 65.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XE0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG400, 0.1M CHES PH 9.5, 0.2M REMARK 280 NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.15000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH G2001 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 75 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 75 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 154 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DG G 615 C2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2059 O HOH E 2018 2.07 REMARK 500 OD1 ASP B 20 O HOH A 2013 2.11 REMARK 500 OP2 DC G 611 O HOH G 2007 2.15 REMARK 500 OD2 ASP B 20 O HOH B 2003 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 501 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA E 506 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 507 C1' - O4' - C4' ANGL. DEV. = -8.0 DEGREES REMARK 500 DC E 507 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA E 511 O4' - C1' - N9 ANGL. DEV. = -6.5 DEGREES REMARK 500 DG E 514 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DA E 516 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG E 518 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 DG E 523 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA E 524 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA G 604 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC G 607 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT G 609 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC G 613 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT G 614 O4' - C1' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DA G 616 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC G 617 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 80 115.05 -38.51 REMARK 500 ASP A 137 63.19 -105.26 REMARK 500 ALA A 150 -176.39 -64.74 REMARK 500 VAL A 151 -57.40 66.69 REMARK 500 LEU B 97 -33.51 -131.29 REMARK 500 LYS B 139 -32.17 -137.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH G2014 DISTANCE = 7.96 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G9Z RELATED DB: PDB REMARK 900 LAGLIDADG HOMING ENDONUCLEASE I-CREI / DNA PRODUCT COMPLEXWITH REMARK 900 MAGNESIUM REMARK 900 RELATED ID: 1BP7 RELATED DB: PDB REMARK 900 GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING REMARK 900 SITE DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1AF5 RELATED DB: PDB REMARK 900 GROUP I MOBILE INTRON ENDONUCLEASE REMARK 900 RELATED ID: 2VBL RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 2VBJ RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 2VBO RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 1MOW RELATED DB: PDB REMARK 900 E-DREI REMARK 900 RELATED ID: 1G9Y RELATED DB: PDB REMARK 900 HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX WITHCALCIUM REMARK 900 RELATED ID: 1N3F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNASEQUENCE II REMARK 900 (PALINDROME OF RIGHT SIDE OF WILDTYPE DNATARGET SEQUENCE) REMARK 900 RELATED ID: 2VBN RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 1U0D RELATED DB: PDB REMARK 900 Y33H MUTATANT OF HOMING ENDONUCLEASE I-CREI REMARK 900 RELATED ID: 1T9I RELATED DB: PDB REMARK 900 I-CREI(D20N)/DNA COMPLEX REMARK 900 RELATED ID: 1T9J RELATED DB: PDB REMARK 900 I-CREI(Q47E)/DNA COMPLEX REMARK 900 RELATED ID: 1N3E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNASEQUENCE I REMARK 900 (PALINDROME OF LEFT SIDE OF WILDTYPE DNA TARGETSEQUENCE) REMARK 900 RELATED ID: 1U0C RELATED DB: PDB REMARK 900 Y33C MUTATANT OF HOMING ENDONUCLEASE I-CREI REMARK 900 RELATED ID: 4AAF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN REMARK 900 ALTERED TARGET (THE FOUR CENTRAL BASES , 2NN REGION, ARE COMPOSED REMARK 900 BY TGCA FROM 5' TO 3') REMARK 900 RELATED ID: 4AAG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS REMARK 900 WILD-TYPE TARGET IN PRESENCE OF CA AT THE ACTIVE SITE (THE FOUR REMARK 900 CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') REMARK 900 RELATED ID: 4AAD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS REMARK 900 WILD-TYPE TARGET IN ABSENCE OF METAL IONS AT THE ACTIVE SITE (THE REMARK 900 FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') REMARK 900 RELATED ID: 4AAB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS REMARK 900 WILD-TYPE TARGET (THE FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED REMARK 900 BY GTAC FROM 5' TO 3') DBREF 4AAE A 2 154 UNP P05725 DNE1_CHLRE 2 154 DBREF 4AAE B 2 154 UNP P05725 DNE1_CHLRE 2 154 DBREF 4AAE E 501 524 PDB 4AAE 4AAE 501 524 DBREF 4AAE G 601 624 PDB 4AAE 4AAE 601 624 SEQADV 4AAE ASN A 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQADV 4AAE ASN B 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQRES 1 A 153 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 A 153 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 A 153 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 A 153 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 A 153 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 A 153 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 A 153 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 A 153 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 A 153 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 A 153 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 A 153 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 A 153 SER GLU THR VAL ARG ALA VAL LEU ASP SER SEQRES 1 B 153 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 B 153 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 B 153 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 B 153 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 B 153 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 B 153 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 B 153 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 B 153 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 B 153 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 B 153 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 B 153 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 B 153 SER GLU THR VAL ARG ALA VAL LEU ASP SER SEQRES 1 E 24 DT DC DA DA DA DA DC DG DT DC DA DG DC SEQRES 2 E 24 DG DG DA DC DG DT DT DT DT DG DA SEQRES 1 G 24 DT DC DA DA DA DA DC DG DT DC DC DG DC SEQRES 2 G 24 DT DG DA DC DG DT DT DT DT DG DA FORMUL 5 HOH *150(H2 O) HELIX 1 1 ASN A 6 ASP A 20 1 15 HELIX 2 2 ARG A 52 GLY A 63 1 12 HELIX 3 3 GLU A 80 GLN A 92 1 13 HELIX 4 4 PRO A 93 LEU A 95 5 3 HELIX 5 5 LYS A 98 GLN A 111 1 14 HELIX 6 6 GLN A 111 LYS A 116 1 6 HELIX 7 7 SER A 118 ASN A 136 1 19 HELIX 8 8 THR A 144 ALA A 150 1 7 HELIX 9 9 ASN B 6 ASP B 20 1 15 HELIX 10 10 ARG B 51 GLY B 63 1 13 HELIX 11 11 GLU B 80 GLN B 92 1 13 HELIX 12 12 PRO B 93 LEU B 95 5 3 HELIX 13 13 LYS B 98 LYS B 116 1 19 HELIX 14 14 SER B 118 ASN B 136 1 19 HELIX 15 15 THR B 144 ASP B 153 1 10 SHEET 1 AA 4 GLY A 21 PRO A 29 0 SHEET 2 AA 4 HIS A 37 LYS A 48 -1 O GLN A 38 N LYS A 28 SHEET 3 AA 4 VAL A 73 LEU A 78 -1 O SER A 74 N GLN A 47 SHEET 4 AA 4 TYR A 66 ASP A 69 -1 O TYR A 66 N ILE A 77 SHEET 1 BA 4 GLY B 21 PRO B 29 0 SHEET 2 BA 4 HIS B 37 LYS B 48 -1 O GLN B 38 N LYS B 28 SHEET 3 BA 4 VAL B 73 LEU B 78 -1 O SER B 74 N GLN B 47 SHEET 4 BA 4 TYR B 66 ASP B 69 -1 O TYR B 66 N ILE B 77 CRYST1 49.150 70.340 172.300 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020346 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005804 0.00000