PDB Short entry for 4AAF HEADER HYDROLASE/DNA 01-DEC-11 4AAF TITLE CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH TITLE 2 AN ALTERED TARGET (THE FOUR CENTRAL BASES, 2NN REGION, ARE TITLE 3 COMPOSED BY TGCA FROM 5' TO 3') COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ENDONUCLEASE I-CREI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: I-CREI, 23S RRNA INTRON PROTEIN; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 24MER DNA; COMPND 10 CHAIN: E, G SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: CDFDUET1, PET24D; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-DNA COMPLEX, GENE TARGETING, PROTEIN-DNA INTERACTION, KEYWDS 2 HOMING ENDONUCLEASES EXPDTA X-RAY DIFFRACTION AUTHOR R.MOLINA,P.REDONDO,S.STELLA,M.MARENCHINO,M.D'ABRAMO,F.L.GERVASIO, AUTHOR 2 J.C.EPINAT,J.VALTON,S.GRIZOT,P.DUCHATEAU,J.PRIETO,G.MONTOYA REVDAT 2 22-AUG-12 4AAF 1 JRNL REMARK REVDAT 1 02-MAY-12 4AAF 0 JRNL AUTH R.MOLINA,P.REDONDO,S.STELLA,M.MARENCHINO,M.D'ABRAMO, JRNL AUTH 2 F.L.GERVASIO,J.CHARLES EPINAT,J.VALTON,S.GRIZOT,P.DUCHATEAU, JRNL AUTH 3 J.PRIETO,G.MONTOYA JRNL TITL NON-SPECIFIC PROTEIN-DNA INTERACTIONS CONTROL I-CREI TARGET JRNL TITL 2 BINDING AND CLEAVAGE. JRNL REF NUCLEIC ACIDS RES. V. 40 6936 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22495931 JRNL DOI 10.1093/NAR/GKS320 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.500 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.144 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.33 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.35 REMARK 3 NUMBER OF REFLECTIONS : 21362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2011 REMARK 3 R VALUE (WORKING SET) : 0.1963 REMARK 3 FREE R VALUE : 0.2473 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.3 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.1571 - 5.3846 0.96 2062 212 0.1941 0.2279 REMARK 3 2 5.3846 - 4.2744 0.98 2003 205 0.1438 0.1862 REMARK 3 3 4.2744 - 3.7342 0.97 1931 198 0.1712 0.2333 REMARK 3 4 3.7342 - 3.3929 0.98 1947 201 0.1976 0.2452 REMARK 3 5 3.3929 - 3.1497 0.97 1915 199 0.1922 0.2270 REMARK 3 6 3.1497 - 2.9640 0.97 1899 194 0.2231 0.3076 REMARK 3 7 2.9640 - 2.8156 0.98 1899 194 0.2552 0.3202 REMARK 3 8 2.8156 - 2.6930 0.97 1915 197 0.2783 0.3325 REMARK 3 9 2.6930 - 2.5894 0.98 1884 193 0.2928 0.3690 REMARK 3 10 2.5894 - 2.5000 0.97 1917 197 0.3509 0.4361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.329 REMARK 3 B_SOL : 52.934 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.84 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.6311 REMARK 3 B22 (A**2) : -10.690 REMARK 3 B33 (A**2) : 21.3155 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3613 REMARK 3 ANGLE : 1.215 5086 REMARK 3 CHIRALITY : 0.070 580 REMARK 3 PLANARITY : 0.004 475 REMARK 3 DIHEDRAL : 22.763 1425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -11.9731 -9.0236 24.1792 REMARK 3 T TENSOR REMARK 3 T11: 0.2395 T22: 0.3695 REMARK 3 T33: 0.3493 T12: 0.0386 REMARK 3 T13: -0.0085 T23: -0.0886 REMARK 3 L TENSOR REMARK 3 L11: 1.6632 L22: 3.2603 REMARK 3 L33: 2.0553 L12: 1.2511 REMARK 3 L13: 0.8798 L23: 1.8546 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: 0.0030 S13: -0.0575 REMARK 3 S21: -0.1697 S22: -0.3080 S23: 0.3264 REMARK 3 S31: -0.0697 S32: -0.2378 S33: 0.3145 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-11. REMARK 100 THE PDBE ID CODE IS EBI-50565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.50 REMARK 200 RESOLUTION RANGE LOW (A) : 71.43 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.6 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.5 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.5 REMARK 200 R MERGE FOR SHELL (I) : 0.47 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XE0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% METOH, 0.1M SODIUM REMARK 280 CACODYLATE PH 6.5, REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.75500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E2021 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 75 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 75 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 153 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DG G 615 C2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 118 N LYS A 121 2.20 REMARK 500 O LYS B 7 O HOH B 2003 1.99 REMARK 500 N LEU B 10 O HOH B 2003 2.11 REMARK 500 N LEU B 11 O HOH B 2003 2.08 REMARK 500 OD1 ASP B 20 O HOH A 2006 2.16 REMARK 500 OE1 GLN B 47 O HOH B 2008 2.20 REMARK 500 O3' DT E 511 O HOH E 2012 2.14 REMARK 500 OP2 DT E 519 O HOH A 2037 2.08 REMARK 500 O HOH A 2019 O HOH B 2040 2.04 REMARK 500 O HOH B 2006 O HOH B 2007 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC E 502 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DC E 507 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC E 507 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DT E 509 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC E 510 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA E 516 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA G 603 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DA G 604 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC G 607 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT G 609 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC G 613 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA G 616 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG G 623 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 36.92 -149.82 REMARK 500 GLU A 117 -82.37 -127.48 REMARK 500 THR A 144 -169.34 -115.77 REMARK 500 ALA A 150 30.63 -92.84 REMARK 500 VAL A 151 -40.71 -134.54 REMARK 500 ASP B 20 13.32 -143.55 REMARK 500 ASN B 30 118.14 -161.69 REMARK 500 LYS B 142 -50.09 -122.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E1525 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G9Z RELATED DB: PDB REMARK 900 LAGLIDADG HOMING ENDONUCLEASE I-CREI / DNA PRODUCT REMARK 900 COMPLEXWITH MAGNESIUM REMARK 900 RELATED ID: 1BP7 RELATED DB: PDB REMARK 900 GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED REMARK 900 WITH HOMING SITE DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 2VBL RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND REMARK 900 CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 4AAE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN REMARK 900 COMPLEX WITH AN ALTERED TARGET (THE FOUR CENTRAL BASES REMARK 900 , 2NN REGION, ARE COMPOSED BY AGCG FROM 5' TO 3') REMARK 900 RELATED ID: 2VBO RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND REMARK 900 CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 1MOW RELATED DB: PDB REMARK 900 E-DREI REMARK 900 RELATED ID: 1U0D RELATED DB: PDB REMARK 900 Y33H MUTATANT OF HOMING ENDONUCLEASE I-CREI REMARK 900 RELATED ID: 4AAD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN REMARK 900 COMPLEX WITH ITS WILD-TYPE TARGET IN ABSENCE OF REMARK 900 METAL IONS AT THE ACTIVE SITE (THE FOUR CENTRAL REMARK 900 BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') REMARK 900 RELATED ID: 1T9I RELATED DB: PDB REMARK 900 I-CREI(D20N)/DNA COMPLEX REMARK 900 RELATED ID: 1T9J RELATED DB: PDB REMARK 900 I-CREI(Q47E)/DNA COMPLEX REMARK 900 RELATED ID: 1N3E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC REMARK 900 DNASEQUENCE I (PALINDROME OF LEFT SIDE OF WILDTYPE DNA REMARK 900 TARGETSEQUENCE) REMARK 900 RELATED ID: 4AAB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN REMARK 900 COMPLEX WITH ITS WILD-TYPE TARGET (THE FOUR CENTRAL REMARK 900 BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') REMARK 900 RELATED ID: 1AF5 RELATED DB: PDB REMARK 900 GROUP I MOBILE INTRON ENDONUCLEASE REMARK 900 RELATED ID: 2VBJ RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND REMARK 900 CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 1G9Y RELATED DB: PDB REMARK 900 HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX REMARK 900 WITHCALCIUM REMARK 900 RELATED ID: 1N3F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC REMARK 900 DNASEQUENCE II (PALINDROME OF RIGHT SIDE OF WILDTYPE REMARK 900 DNATARGET SEQUENCE) REMARK 900 RELATED ID: 2VBN RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND REMARK 900 CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 1U0C RELATED DB: PDB REMARK 900 Y33C MUTATANT OF HOMING ENDONUCLEASE I-CREI REMARK 900 RELATED ID: 4AAG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN REMARK 900 COMPLEX WITH ITS WILD-TYPE TARGET IN PRESENCE OF CA REMARK 900 AT THE ACTIVE SITE (THE FOUR CENTRAL BASES, 2NN REMARK 900 REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') DBREF 4AAF A 2 153 UNP P05725 DNE1_CHLRE 2 153 DBREF 4AAF B 2 153 UNP P05725 DNE1_CHLRE 2 153 DBREF 4AAF E 501 524 PDB 4AAF 4AAF 501 524 DBREF 4AAF G 601 624 PDB 4AAF 4AAF 601 624 SEQADV 4AAF ASN A 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQADV 4AAF ASN B 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQRES 1 A 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 A 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 A 152 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 A 152 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 A 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 A 152 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 A 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 A 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 A 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 A 152 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 A 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 A 152 SER GLU THR VAL ARG ALA VAL LEU ASP SEQRES 1 B 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 B 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 B 152 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 B 152 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 B 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 B 152 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 B 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 B 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 B 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 B 152 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 B 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 B 152 SER GLU THR VAL ARG ALA VAL LEU ASP SEQRES 1 E 24 DT DC DA DA DA DA DC DG DT DC DT DG DC SEQRES 2 E 24 DA DG DA DC DG DT DT DT DT DG DA SEQRES 1 G 24 DT DC DA DA DA DA DC DG DT DC DT DG DC SEQRES 2 G 24 DA DG DA DC DG DT DT DT DT DG DA HET EDO E1525 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *107(H2 O) HELIX 1 1 ASN A 6 ASP A 20 1 15 HELIX 2 2 ARG A 51 GLY A 63 1 13 HELIX 3 3 GLU A 80 GLN A 92 1 13 HELIX 4 4 PRO A 93 LEU A 95 5 3 HELIX 5 5 LYS A 98 GLN A 111 1 14 HELIX 6 6 GLN A 111 LYS A 116 1 6 HELIX 7 7 SER A 118 ASN A 136 1 19 HELIX 8 8 THR A 144 ALA A 150 1 7 HELIX 9 9 ASN B 6 ASP B 20 1 15 HELIX 10 10 ARG B 51 GLY B 63 1 13 HELIX 11 11 GLU B 80 GLN B 92 1 13 HELIX 12 12 LYS B 98 GLN B 111 1 14 HELIX 13 13 GLN B 111 LYS B 116 1 6 HELIX 14 14 SER B 118 ASN B 136 1 19 HELIX 15 15 THR B 144 LEU B 152 1 9 SHEET 1 AA 4 GLY A 21 PRO A 29 0 SHEET 2 AA 4 HIS A 37 LYS A 48 -1 O GLN A 38 N LYS A 28 SHEET 3 AA 4 VAL A 73 LEU A 78 -1 O SER A 74 N GLN A 47 SHEET 4 AA 4 TYR A 66 ASP A 69 -1 O TYR A 66 N ILE A 77 SHEET 1 BA 4 GLY B 21 PRO B 29 0 SHEET 2 BA 4 HIS B 37 LYS B 48 -1 O GLN B 38 N LYS B 28 SHEET 3 BA 4 VAL B 73 LEU B 78 -1 O SER B 74 N GLN B 47 SHEET 4 BA 4 TYR B 66 ASP B 69 -1 O TYR B 66 N ILE B 77 SITE 1 AC1 6 SER A 138 LYS A 139 THR A 140 DG E 515 SITE 2 AC1 6 DA E 516 DC E 517 CRYST1 49.170 71.430 173.510 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005763 0.00000