PDB Short entry for 4AG4 HEADER IMMUNE SYSTEM/TRANSFERASE 24-JAN-12 4AG4 TITLE CRYSTAL STRUCTURE OF A DDR1-FAB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 29-367; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1, CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A, CELL ADHESION KINASE, DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE, HGK2, MAMMARY CARCINOMA KINASE 10, MCK-10, PROTEIN-TYROSINE COMPND 8 KINASE 3A, PROTEIN-TYROSINE KINASE RTK-6, TRK E, TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK, CD167A; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: MONOCLONAL ANTIBODY 3E3 HEAVY CHAIN; COMPND 14 CHAIN: H; COMPND 15 OTHER_DETAILS: MONOCLONAL ANTIBODY AGAINST HUMAN DDR1; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: MONOCLONAL ANTIBODY 3E3 LIGHT CHAIN; COMPND 18 CHAIN: L; COMPND 19 OTHER_DETAILS: MONOCLONAL ANTIBODY AGAINST HUMAN DDR1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293 C18; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCEP-PU; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 16 ORGANISM_TAXID: 10090 KEYWDS IMMUNE SYSTEM-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.CARAFOLI,M.C.MAYER,K.SHIRAISHI,M.A.PECHEVA,L.Y.CHAN,R.NAN, AUTHOR 2 B.LEITINGER,E.HOHENESTER REVDAT 3 20-DEC-23 4AG4 1 HETSYN REVDAT 2 29-JUL-20 4AG4 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 18-APR-12 4AG4 0 JRNL AUTH F.CARAFOLI,M.C.MAYER,K.SHIRAISHI,M.A.PECHEVA,L.Y.CHAN,R.NAN, JRNL AUTH 2 B.LEITINGER,E.HOHENESTER JRNL TITL STRUCTURE OF THE DISCOIDIN DOMAIN RECEPTOR 1 EXTRACELLULAR JRNL TITL 2 REGION BOUND TO AN INHIBITORY FAB FRAGMENT REVEALS FEATURES JRNL TITL 3 IMPORTANT FOR SIGNALING. JRNL REF STRUCTURE V. 20 688 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22483115 JRNL DOI 10.1016/J.STR.2012.02.011 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 24035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2389 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.67600 REMARK 3 B22 (A**2) : -6.58100 REMARK 3 B33 (A**2) : -4.09500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED INDIVIDUAL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.780 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.320 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.730 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 33.59 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1290051054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24112 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2WUH AND 2QQK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.25500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 125.74000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.25500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 125.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.68500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.25500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 125.74000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.68500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.25500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 125.74000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 LEU A 28 REMARK 465 ALA A 29 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 GLY H 127 REMARK 465 SER H 128 REMARK 465 ALA H 129 REMARK 465 ALA H 130 REMARK 465 GLN H 131 REMARK 465 THR H 132 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 ALA A 370 CA C O CB REMARK 470 GLN H 61 CG CD OE1 NE2 REMARK 470 LYS H 64 CG CD CE NZ REMARK 470 LYS H 66 CG CD CE NZ REMARK 470 LYS H 73 CG CD CE NZ REMARK 470 LYS H 209 CG CD CE NZ REMARK 470 LYS L 142 CG CD CE NZ REMARK 470 ASP L 143 CG OD1 OD2 REMARK 470 LYS L 149 CG CD CE NZ REMARK 470 ARG L 188 CG CD NE CZ NH1 NH2 REMARK 470 ASN L 212 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 329 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 PRO H 82C C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 32 28.88 -144.00 REMARK 500 MET A 37 -72.21 -61.96 REMARK 500 ARG A 40 -10.74 91.98 REMARK 500 SER A 51 143.93 161.02 REMARK 500 ASP A 68 157.20 -42.75 REMARK 500 ASP A 70 47.92 -90.87 REMARK 500 ALA A 72 -162.73 -178.44 REMARK 500 ALA A 76 -71.23 -74.85 REMARK 500 PHE A 80 -174.88 -51.54 REMARK 500 GLN A 92 -58.04 74.45 REMARK 500 ALA A 107 77.77 43.06 REMARK 500 SER A 205 -70.02 63.96 REMARK 500 LEU A 210 46.64 -101.35 REMARK 500 PRO A 309 -76.30 -52.69 REMARK 500 GLU A 314 -22.06 -32.23 REMARK 500 LEU A 326 135.40 72.11 REMARK 500 CYS H 22 104.93 -161.66 REMARK 500 THR H 28 97.64 -61.12 REMARK 500 PRO H 41 135.73 -36.91 REMARK 500 PRO H 52A -70.13 -36.77 REMARK 500 SER H 53 88.90 -65.05 REMARK 500 LYS H 73 36.36 -68.74 REMARK 500 THR H 83 75.70 -158.79 REMARK 500 SER H 84 -62.27 45.59 REMARK 500 ALA H 88 -159.43 -179.87 REMARK 500 PHE H 146 137.13 -171.90 REMARK 500 GLN H 171 111.22 171.24 REMARK 500 ILE L 2 79.72 59.84 REMARK 500 THR L 20 105.30 -170.42 REMARK 500 PRO L 40 129.15 -29.46 REMARK 500 THR L 51 -52.57 59.75 REMARK 500 SER L 65 -171.07 -177.00 REMARK 500 SER L 67 -176.57 179.43 REMARK 500 SER L 76 -74.93 -45.52 REMARK 500 SER L 93 130.76 -171.49 REMARK 500 THR L 126 32.90 -65.00 REMARK 500 SER L 127 12.64 -148.93 REMARK 500 ASP L 143 109.97 -48.47 REMARK 500 ASP L 151 59.37 71.45 REMARK 500 LEU L 181 -167.02 -128.77 REMARK 500 GLU L 187 21.02 -74.19 REMARK 500 LYS L 199 -6.32 -51.80 REMARK 500 ARG L 211 -71.30 -104.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 211 O REMARK 620 2 GLN A 230 OE1 79.0 REMARK 620 3 TYR A 253 O 160.0 81.4 REMARK 620 4 TYR A 255 O 100.8 101.7 87.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 230 O REMARK 620 2 ASP A 233 OD1 83.4 REMARK 620 3 VAL A 235 O 171.8 99.8 REMARK 620 4 SER A 360 O 87.1 167.3 88.6 REMARK 620 5 GLU A 361 OE1 83.2 86.3 89.4 84.2 REMARK 620 N 1 2 3 4 DBREF 4AG4 A 29 367 UNP Q08345 DDR1_HUMAN 29 367 DBREF 4AG4 H 1 212 PDB 4AG4 4AG4 1 212 DBREF 4AG4 L 1 214 PDB 4AG4 4AG4 1 214 SEQADV 4AG4 ALA A 26 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 PRO A 27 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 LEU A 28 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 ALA A 368 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 ALA A 369 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 ALA A 370 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 HIS A 371 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 HIS A 372 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 HIS A 373 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 HIS A 374 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 HIS A 375 UNP Q08345 EXPRESSION TAG SEQADV 4AG4 HIS A 376 UNP Q08345 EXPRESSION TAG SEQRES 1 A 351 ALA PRO LEU ALA LYS CYS ARG TYR ALA LEU GLY MET GLN SEQRES 2 A 351 ASP ARG THR ILE PRO ASP SER ASP ILE SER ALA SER SER SEQRES 3 A 351 SER TRP SER ASP SER THR ALA ALA ARG HIS SER ARG LEU SEQRES 4 A 351 GLU SER SER ASP GLY ASP GLY ALA TRP CYS PRO ALA GLY SEQRES 5 A 351 SER VAL PHE PRO LYS GLU GLU GLU TYR LEU GLN VAL ASP SEQRES 6 A 351 LEU GLN ARG LEU HIS LEU VAL ALA LEU VAL GLY THR GLN SEQRES 7 A 351 GLY ARG HIS ALA GLY GLY LEU GLY LYS GLU PHE SER ARG SEQRES 8 A 351 SER TYR ARG LEU ARG TYR SER ARG ASP GLY ARG ARG TRP SEQRES 9 A 351 MET GLY TRP LYS ASP ARG TRP GLY GLN GLU VAL ILE SER SEQRES 10 A 351 GLY ASN GLU ASP PRO GLU GLY VAL VAL LEU LYS ASP LEU SEQRES 11 A 351 GLY PRO PRO MET VAL ALA ARG LEU VAL ARG PHE TYR PRO SEQRES 12 A 351 ARG ALA ASP ARG VAL MET SER VAL CYS LEU ARG VAL GLU SEQRES 13 A 351 LEU TYR GLY CYS LEU TRP ARG ASP GLY LEU LEU SER TYR SEQRES 14 A 351 THR ALA PRO VAL GLY GLN THR MET TYR LEU SER GLU ALA SEQRES 15 A 351 VAL TYR LEU ASN ASP SER THR TYR ASP GLY HIS THR VAL SEQRES 16 A 351 GLY GLY LEU GLN TYR GLY GLY LEU GLY GLN LEU ALA ASP SEQRES 17 A 351 GLY VAL VAL GLY LEU ASP ASP PHE ARG LYS SER GLN GLU SEQRES 18 A 351 LEU ARG VAL TRP PRO GLY TYR ASP TYR VAL GLY TRP SER SEQRES 19 A 351 ASN HIS SER PHE SER SER GLY TYR VAL GLU MET GLU PHE SEQRES 20 A 351 GLU PHE ASP ARG LEU ARG ALA PHE GLN ALA MET GLN VAL SEQRES 21 A 351 HIS CYS ASN ASN MET HIS THR LEU GLY ALA ARG LEU PRO SEQRES 22 A 351 GLY GLY VAL GLU CYS ARG PHE ARG ARG GLY PRO ALA MET SEQRES 23 A 351 ALA TRP GLU GLY GLU PRO MET ARG HIS ASN LEU GLY GLY SEQRES 24 A 351 ASN LEU GLY ASP PRO ARG ALA ARG ALA VAL SER VAL PRO SEQRES 25 A 351 LEU GLY GLY ARG VAL ALA ARG PHE LEU GLN CYS ARG PHE SEQRES 26 A 351 LEU PHE ALA GLY PRO TRP LEU LEU PHE SER GLU ILE SER SEQRES 27 A 351 PHE ILE SER ASP ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 H 215 GLN VAL GLN LEU GLN GLU SER GLY ALA GLU LEU VAL ARG SEQRES 2 H 215 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 215 TYR THR PHE SER ILE SER TRP ILE ASN TRP VAL LYS GLN SEQRES 4 H 215 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ASN ILE TYR SEQRES 5 H 215 PRO SER GLY GLY TYR THR ASN TYR ASN GLN LYS PHE LYS SEQRES 6 H 215 ASP LYS ALA THR LEU THR VAL ASP LYS SER SER ASN THR SEQRES 7 H 215 ALA TYR ILE GLN LEU SER SER PRO THR SER GLU ASP SER SEQRES 8 H 215 ALA VAL TYR TYR CYS THR ARG GLY TYR GLY HIS LEU ASP SEQRES 9 H 215 TYR TRP GLY GLN GLY THR THR LEU THR VAL SER ALA ALA SEQRES 10 H 215 LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 H 215 SER ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS SEQRES 12 H 215 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR SEQRES 13 H 215 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 H 215 PRO ALA VAL LEU GLN SER ASP LEU TYR SER LEU SER SER SEQRES 15 H 215 SER VAL THR VAL PRO SER SER THR TRP PRO SER GLU THR SEQRES 16 H 215 VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 H 215 VAL ASP LYS LYS ILE VAL PRO SEQRES 1 L 213 ASP ILE GLN LEU THR GLN SER PRO ALA LEU MET SER ALA SEQRES 2 L 213 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 L 213 SER SER VAL THR PHE MET TYR TRP TYR GLN GLN LYS PRO SEQRES 4 L 213 ARG SER SER PRO LYS PRO TRP ILE TYR LEU THR SER ASN SEQRES 5 L 213 LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SER GLY SEQRES 6 L 213 SER GLY THR SER TYR SER LEU THR ILE SER SER MET GLU SEQRES 7 L 213 ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 L 213 SER ASN PRO TYR THR PHE GLY GLY GLY THR LYS LEU GLU SEQRES 9 L 213 LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 L 213 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 11 L 213 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 L 213 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 L 213 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 L 213 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 L 213 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 L 213 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 17 L 213 ASN ARG ASN GLU CYS MODRES 4AG4 ASN A 211 ASN GLYCOSYLATION SITE MODRES 4AG4 ASN A 260 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET CA A5001 1 HET CA A5002 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 6 CA 2(CA 2+) FORMUL 8 HOH *14(H2 O) HELIX 1 1 PRO A 43 SER A 45 5 3 HELIX 2 2 SER A 54 ALA A 58 5 5 HELIX 3 3 ALA A 58 SER A 62 5 5 HELIX 4 4 HIS A 106 LEU A 110 5 5 HELIX 5 5 GLY A 229 ASP A 233 5 5 HELIX 6 6 HIS A 261 PHE A 263 5 3 HELIX 7 7 MET A 290 GLY A 294 5 5 HELIX 8 8 THR H 28 SER H 32 5 5 HELIX 9 9 GLN H 61 LYS H 64 5 4 HELIX 10 10 THR H 83 SER H 87 5 5 HELIX 11 11 SER H 156 SER H 158 5 3 HELIX 12 12 GLU L 79 ALA L 83 5 5 HELIX 13 13 SER L 121 THR L 126 1 6 HELIX 14 14 LYS L 183 GLU L 187 1 5 SHEET 1 AA 6 TYR A 33 ALA A 34 0 SHEET 2 AA 6 ARG A 179 LEU A 186 -1 O GLY A 184 N TYR A 33 SHEET 3 AA 6 LEU A 87 GLN A 103 1 O LEU A 96 N CYS A 185 SHEET 4 AA 6 VAL A 151 ARG A 169 -1 O VAL A 151 N THR A 102 SHEET 5 AA 6 SER A 117 SER A 123 -1 O SER A 117 N ARG A 169 SHEET 6 AA 6 TRP A 129 GLY A 131 1 O MET A 130 N TYR A 122 SHEET 1 AB 4 TYR A 33 ALA A 34 0 SHEET 2 AB 4 ARG A 179 LEU A 186 -1 O GLY A 184 N TYR A 33 SHEET 3 AB 4 LEU A 87 GLN A 103 1 O LEU A 96 N CYS A 185 SHEET 4 AB 4 ILE A 47 ALA A 49 -1 O SER A 48 N GLN A 88 SHEET 1 AC 2 TRP A 129 GLY A 131 0 SHEET 2 AC 2 SER A 117 SER A 123 1 O TYR A 122 N MET A 130 SHEET 1 AD 6 TYR A 33 ALA A 34 0 SHEET 2 AD 6 ARG A 179 LEU A 186 -1 O GLY A 184 N TYR A 33 SHEET 3 AD 6 LEU A 87 GLN A 103 1 O LEU A 96 N CYS A 185 SHEET 4 AD 6 VAL A 151 ARG A 169 -1 O VAL A 151 N THR A 102 SHEET 5 AD 6 SER A 117 SER A 123 -1 O SER A 117 N ARG A 169 SHEET 6 AD 6 ILE A 141 SER A 142 -1 O ILE A 141 N TYR A 118 SHEET 1 AE 6 HIS A 218 VAL A 220 0 SHEET 2 AE 6 LEU A 223 TYR A 225 1 O LEU A 223 N VAL A 220 SHEET 3 AE 6 LEU A 191 PRO A 197 -1 O ALA A 196 N GLN A 224 SHEET 4 AE 6 TYR A 267 CYS A 287 1 O GLU A 271 N THR A 195 SHEET 5 AE 6 TRP A 356 ALA A 368 -1 N SER A 360 O HIS A 286 SHEET 6 AE 6 VAL A 256 SER A 259 -1 O VAL A 256 N PHE A 359 SHEET 1 AF 7 HIS A 218 VAL A 220 0 SHEET 2 AF 7 LEU A 223 TYR A 225 1 O LEU A 223 N VAL A 220 SHEET 3 AF 7 LEU A 191 PRO A 197 -1 O ALA A 196 N GLN A 224 SHEET 4 AF 7 TYR A 267 CYS A 287 1 O GLU A 271 N THR A 195 SHEET 5 AF 7 ARG A 332 LEU A 351 -1 O ARG A 332 N CYS A 287 SHEET 6 AF 7 GLY A 300 ARG A 306 -1 O GLY A 300 N LEU A 351 SHEET 7 AF 7 MET A 318 ASN A 321 -1 O MET A 318 N CYS A 303 SHEET 1 AG 2 THR A 201 MET A 202 0 SHEET 2 AG 2 VAL A 208 TYR A 209 -1 O VAL A 208 N MET A 202 SHEET 1 HA 2 GLN H 3 GLN H 5 0 SHEET 2 HA 2 LYS H 23 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 1 HB 4 ALA H 9 VAL H 12 0 SHEET 2 HB 4 THR H 107 VAL H 111 1 O THR H 108 N GLU H 10 SHEET 3 HB 4 VAL H 89 ARG H 94 -1 O TYR H 90 N THR H 107 SHEET 4 HB 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 HC 6 ALA H 9 VAL H 12 0 SHEET 2 HC 6 THR H 107 VAL H 111 1 O THR H 108 N GLU H 10 SHEET 3 HC 6 VAL H 89 ARG H 94 -1 O TYR H 90 N THR H 107 SHEET 4 HC 6 ILE H 34 GLN H 39 -1 O ASN H 35 N THR H 93 SHEET 5 HC 6 GLU H 46 TYR H 52 -1 O GLU H 46 N LYS H 38 SHEET 6 HC 6 TYR H 56 TYR H 59 -1 O TYR H 56 N TYR H 52 SHEET 1 HD 2 TYR H 102 TRP H 103 0 SHEET 2 HD 2 VAL H 89 ARG H 94 -1 O ARG H 94 N TYR H 102 SHEET 1 HE 3 VAL H 18 LEU H 20 0 SHEET 2 HE 3 THR H 77 LEU H 82 -1 O ILE H 80 N LEU H 20 SHEET 3 HE 3 ALA H 67 ASP H 72 -1 O THR H 68 N GLN H 81 SHEET 1 HF 4 SER H 120 LEU H 124 0 SHEET 2 HF 4 MET H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 HF 4 TYR H 175 PRO H 184 -1 O TYR H 175 N TYR H 145 SHEET 4 HF 4 VAL H 163 LEU H 170 -1 O HIS H 164 N SER H 180 SHEET 1 HG 3 THR H 151 TRP H 154 0 SHEET 2 HG 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 HG 3 THR H 204 LYS H 209 -1 O THR H 204 N HIS H 199 SHEET 1 LA 4 LEU L 4 SER L 7 0 SHEET 2 LA 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 LA 4 SER L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 4 LA 4 PHE L 62 SER L 67 -1 O SER L 63 N THR L 74 SHEET 1 LB 6 LEU L 10 ALA L 13 0 SHEET 2 LB 6 THR L 102 LEU L 106 1 O LYS L 103 N MET L 11 SHEET 3 LB 6 ALA L 84 GLN L 89 -1 O ALA L 84 N LEU L 104 SHEET 4 LB 6 TYR L 34 GLN L 38 -1 O TYR L 34 N GLN L 89 SHEET 5 LB 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 LB 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 LC 4 THR L 114 PHE L 118 0 SHEET 2 LC 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 LC 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 LC 4 VAL L 159 THR L 164 -1 O LEU L 160 N THR L 178 SHEET 1 LD 4 GLU L 154 ARG L 155 0 SHEET 2 LD 4 ASN L 145 ILE L 150 -1 O TRP L 148 N ARG L 155 SHEET 3 LD 4 SER L 191 HIS L 198 -1 O THR L 193 N LYS L 149 SHEET 4 LD 4 SER L 201 ASN L 210 -1 O SER L 201 N HIS L 198 SSBOND 1 CYS A 31 CYS A 185 1555 1555 2.04 SSBOND 2 CYS A 74 CYS A 177 1555 1555 2.04 SSBOND 3 CYS A 303 CYS A 348 1555 1555 2.06 SSBOND 4 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 5 CYS H 140 CYS H 195 1555 1555 2.03 SSBOND 6 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 7 CYS L 134 CYS L 194 1555 1555 2.04 LINK ND2 ASN A 211 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 260 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O ASN A 211 CA CA A5002 1555 1555 2.18 LINK O GLN A 230 CA CA A5001 1555 1555 2.24 LINK OE1 GLN A 230 CA CA A5002 1555 1555 2.63 LINK OD1 ASP A 233 CA CA A5001 1555 1555 2.32 LINK O VAL A 235 CA CA A5001 1555 1555 2.24 LINK O TYR A 253 CA CA A5002 1555 1555 2.56 LINK O TYR A 255 CA CA A5002 1555 1555 2.46 LINK O SER A 360 CA CA A5001 1555 1555 2.30 LINK OE1 GLU A 361 CA CA A5001 1555 1555 2.58 CISPEP 1 GLY A 156 PRO A 157 0 0.11 CISPEP 2 PHE H 146 PRO H 147 0 -0.31 CISPEP 3 GLU H 148 PRO H 149 0 -0.41 CISPEP 4 TRP H 188 PRO H 189 0 -0.01 CISPEP 5 SER L 7 PRO L 8 0 0.11 CISPEP 6 ASN L 94 PRO L 95 0 -0.12 CISPEP 7 TYR L 140 PRO L 141 0 0.38 CRYST1 102.510 251.480 75.370 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013268 0.00000