PDB Short entry for 4AJ0 HEADER IMMUNE SYSTEM 15-FEB-12 4AJ0 TITLE CRYSTALLOGRAPHIC STRUCTURE OF AN AMYLOIDOGENIC VARIANT, 3RCW, OF THE TITLE 2 GERMINAL LINE LAMBDA 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERMINAL LINE LAMBDA 3 3RCW VARIANT; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: VARIABLE DOMAIN VARIANT OF 3RJL2, RESIDUES 1-107; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS IMMUNE SYSTEM, AMYLOIDOSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.I.VILLALBA,O.D.LUNA,E.RUDINO-PINERA,R.SANCHEZ,R.SANCHEZ-LOPEZ, AUTHOR 2 S.ROJAS-TREJO,T.OLAMENDI-PORTUGAL,D.A.FERNANDEZ-VELASCO,B.BECERRIL REVDAT 4 20-DEC-23 4AJ0 1 REMARK REVDAT 3 11-FEB-15 4AJ0 1 JRNL REVDAT 2 14-JAN-15 4AJ0 1 JRNL REVDAT 1 27-FEB-13 4AJ0 0 JRNL AUTH M.I.VILLALBA,J.C.CANUL-TEC,O.D.LUNA-MARTINEZ, JRNL AUTH 2 R.SANCHEZ-ALCALA,T.OLAMENDI-PORTUGAL,E.RUDINO-PINERA, JRNL AUTH 3 S.ROJAS,R.SANCHEZ-LOPEZ,D.A.FERNANDEZ-VELASCO,B.BECERRIL JRNL TITL SITE-DIRECTED MUTAGENESIS REVEALS REGIONS IMPLICATED IN THE JRNL TITL 2 STABILITY AND FIBER FORMATION OF HUMAN LAMBDA3R LIGHT JRNL TITL 3 CHAINS. JRNL REF J.BIOL.CHEM. V. 290 2577 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25505244 JRNL DOI 10.1074/JBC.M114.629550 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.6346 - 3.9938 1.00 2685 145 0.1553 0.1666 REMARK 3 2 3.9938 - 3.1715 1.00 2657 163 0.1534 0.1964 REMARK 3 3 3.1715 - 2.7710 1.00 2676 148 0.1767 0.2072 REMARK 3 4 2.7710 - 2.5178 1.00 2706 134 0.1821 0.2855 REMARK 3 5 2.5178 - 2.3375 1.00 2681 130 0.1888 0.2624 REMARK 3 6 2.3375 - 2.1997 1.00 2670 139 0.1783 0.2261 REMARK 3 7 2.1997 - 2.0896 1.00 2694 128 0.1659 0.2329 REMARK 3 8 2.0896 - 1.9987 1.00 2701 141 0.1666 0.2185 REMARK 3 9 1.9987 - 1.9217 1.00 2724 153 0.1773 0.2397 REMARK 3 10 1.9217 - 1.8554 1.00 2695 146 0.1930 0.2746 REMARK 3 11 1.8554 - 1.7974 1.00 2649 145 0.2112 0.2616 REMARK 3 12 1.7974 - 1.7461 1.00 2671 142 0.2282 0.3105 REMARK 3 13 1.7461 - 1.7001 1.00 2720 121 0.2577 0.2876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 45.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07920 REMARK 3 B22 (A**2) : -0.07920 REMARK 3 B33 (A**2) : 0.15830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3636 REMARK 3 ANGLE : 1.135 5008 REMARK 3 CHIRALITY : 0.084 548 REMARK 3 PLANARITY : 0.005 684 REMARK 3 DIHEDRAL : 13.833 1335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE CRYSTAL CHANNEL CUT, REMARK 200 SI(111), 1M LONG RH COATED REMARK 200 TOROIDAL MIRROR FOR VERTICAL AND REMARK 200 HORIZONTAL FOCUSING. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1LIL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 40 % REMARK 280 TREHALOSE, PH 3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.01167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.02333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER C 1 REMARK 465 SER D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS C 26 O HOH C 2031 1.91 REMARK 500 O HOH B 2034 O HOH B 2072 1.97 REMARK 500 O HOH A 2097 O HOH A 2098 2.06 REMARK 500 O HOH D 2030 O HOH D 2033 2.07 REMARK 500 O HOH A 2011 O HOH A 2034 2.12 REMARK 500 OH TYR D 86 O HOH D 2039 2.13 REMARK 500 O HOH B 2071 O HOH B 2075 2.14 REMARK 500 OG SER D 9 O HOH D 2010 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2103 O HOH D 2022 1445 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 58 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -48.38 76.58 REMARK 500 ASP A 91 -48.08 -148.51 REMARK 500 SER A 92 124.61 59.19 REMARK 500 SER A 93 7.98 -63.98 REMARK 500 THR A 94 -173.80 81.73 REMARK 500 ASP B 50 -48.07 75.46 REMARK 500 ASP B 50 -49.29 75.46 REMARK 500 SER B 93 -105.14 -57.78 REMARK 500 VAL B 96 107.22 1.14 REMARK 500 ASP C 50 -51.34 81.91 REMARK 500 ASP C 50 -52.62 81.91 REMARK 500 SER C 51 -4.80 -142.06 REMARK 500 SER C 51 -5.02 -140.11 REMARK 500 SER C 93 -37.84 -153.03 REMARK 500 ASP D 50 -55.05 78.32 REMARK 500 SER D 92 104.62 53.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 95 VAL B 96 -146.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2068 DISTANCE = 6.67 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG0 A 1108 REMARK 610 PG0 C 1108 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG0 A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG0 C 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 1109 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AIX RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF AN AMYLOIDOGENIC VARIANT, 3RC34Y, OF REMARK 900 THE GERMINAL LINE LAMBDA 3 REMARK 900 RELATED ID: 4AIZ RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF 3MJL2 FROM THE GERMINAL LINE LAMBDA 3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 BECAUSE THIS VARIANT IS RESULT OF MODIFICATIONS OVER 3RJL2 REMARK 999 IT IS NOT DEPOSITED IN ANY DATA BASE. CONTAINS MUTATIONS REMARK 999 C34Y, W91A. DBREF 4AJ0 A 1 107 PDB 4AJ0 4AJ0 1 107 DBREF 4AJ0 B 1 107 PDB 4AJ0 4AJ0 1 107 DBREF 4AJ0 C 1 107 PDB 4AJ0 4AJ0 1 107 DBREF 4AJ0 D 1 107 PDB 4AJ0 4AJ0 1 107 SEQRES 1 A 107 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SER SEQRES 2 A 107 PRO GLY GLN THR ALA SER ILE THR CYS SER GLY ASP LYS SEQRES 3 A 107 LEU GLY ASP LYS TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 A 107 GLY GLN SER PRO VAL LEU VAL ILE TYR GLN ASP SER LYS SEQRES 5 A 107 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 A 107 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 A 107 ALA MET ASP GLU ALA ASP TYR TYR CYS GLN ALA ALA ASP SEQRES 8 A 107 SER SER THR ALA VAL VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 107 THR VAL LEU SEQRES 1 B 107 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SER SEQRES 2 B 107 PRO GLY GLN THR ALA SER ILE THR CYS SER GLY ASP LYS SEQRES 3 B 107 LEU GLY ASP LYS TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 B 107 GLY GLN SER PRO VAL LEU VAL ILE TYR GLN ASP SER LYS SEQRES 5 B 107 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 B 107 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 B 107 ALA MET ASP GLU ALA ASP TYR TYR CYS GLN ALA ALA ASP SEQRES 8 B 107 SER SER THR ALA VAL VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 B 107 THR VAL LEU SEQRES 1 C 107 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SER SEQRES 2 C 107 PRO GLY GLN THR ALA SER ILE THR CYS SER GLY ASP LYS SEQRES 3 C 107 LEU GLY ASP LYS TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 C 107 GLY GLN SER PRO VAL LEU VAL ILE TYR GLN ASP SER LYS SEQRES 5 C 107 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 C 107 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 C 107 ALA MET ASP GLU ALA ASP TYR TYR CYS GLN ALA ALA ASP SEQRES 8 C 107 SER SER THR ALA VAL VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 C 107 THR VAL LEU SEQRES 1 D 107 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SER SEQRES 2 D 107 PRO GLY GLN THR ALA SER ILE THR CYS SER GLY ASP LYS SEQRES 3 D 107 LEU GLY ASP LYS TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 D 107 GLY GLN SER PRO VAL LEU VAL ILE TYR GLN ASP SER LYS SEQRES 5 D 107 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 D 107 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 D 107 ALA MET ASP GLU ALA ASP TYR TYR CYS GLN ALA ALA ASP SEQRES 8 D 107 SER SER THR ALA VAL VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 D 107 THR VAL LEU HET PG0 A1108 6 HET PG0 C1108 6 HET ACT C1109 4 HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM ACT ACETATE ION HETSYN PG0 PEG 6000 FORMUL 5 PG0 2(C5 H12 O3) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *365(H2 O) HELIX 1 1 LYS A 26 LYS A 30 5 5 HELIX 2 2 GLN A 78 GLU A 82 5 5 HELIX 3 3 LYS B 26 LYS B 30 5 5 HELIX 4 4 GLN B 78 GLU B 82 5 5 HELIX 5 5 LYS C 26 LYS C 30 5 5 HELIX 6 6 GLN C 78 GLU C 82 5 5 HELIX 7 7 LYS D 26 LYS D 30 5 5 HELIX 8 8 GLN D 78 GLU D 82 5 5 SHEET 1 AA 4 SER A 9 VAL A 12 0 SHEET 2 AA 4 THR A 102 VAL A 106 1 O LYS A 103 N VAL A 10 SHEET 3 AA 4 ALA A 83 ALA A 90 -1 O ALA A 83 N LEU A 104 SHEET 4 AA 4 VAL A 97 PHE A 98 1 O VAL A 97 N ALA A 89 SHEET 1 AB 5 SER A 9 VAL A 12 0 SHEET 2 AB 5 THR A 102 VAL A 106 1 O LYS A 103 N VAL A 10 SHEET 3 AB 5 ALA A 83 ALA A 90 -1 O ALA A 83 N LEU A 104 SHEET 4 AB 5 TYR A 31 GLN A 37 -1 O TYR A 31 N ALA A 90 SHEET 5 AB 5 VAL A 44 ILE A 47 -1 O VAL A 44 N GLN A 36 SHEET 1 AC 2 VAL A 97 PHE A 98 0 SHEET 2 AC 2 ALA A 83 ALA A 90 1 O ALA A 89 N VAL A 97 SHEET 1 AD 3 ALA A 18 SER A 23 0 SHEET 2 AD 3 THR A 69 ILE A 74 -1 O ALA A 70 N CYS A 22 SHEET 3 AD 3 PHE A 61 SER A 66 -1 O SER A 62 N THR A 73 SHEET 1 BA 4 SER B 9 VAL B 12 0 SHEET 2 BA 4 THR B 102 VAL B 106 1 O LYS B 103 N VAL B 10 SHEET 3 BA 4 ALA B 83 ALA B 90 -1 O ALA B 83 N LEU B 104 SHEET 4 BA 4 VAL B 97 PHE B 98 1 O VAL B 97 N ALA B 89 SHEET 1 BB 5 SER B 9 VAL B 12 0 SHEET 2 BB 5 THR B 102 VAL B 106 1 O LYS B 103 N VAL B 10 SHEET 3 BB 5 ALA B 83 ALA B 90 -1 O ALA B 83 N LEU B 104 SHEET 4 BB 5 TYR B 31 GLN B 37 -1 O TYR B 31 N ALA B 90 SHEET 5 BB 5 VAL B 44 ILE B 47 -1 O VAL B 44 N GLN B 36 SHEET 1 BC 2 VAL B 97 PHE B 98 0 SHEET 2 BC 2 ALA B 83 ALA B 90 1 O ALA B 89 N VAL B 97 SHEET 1 BD 3 ALA B 18 SER B 23 0 SHEET 2 BD 3 THR B 69 ILE B 74 -1 O ALA B 70 N CYS B 22 SHEET 3 BD 3 PHE B 61 SER B 66 -1 O SER B 62 N THR B 73 SHEET 1 CA 4 SER C 9 VAL C 12 0 SHEET 2 CA 4 THR C 102 VAL C 106 1 O LYS C 103 N VAL C 10 SHEET 3 CA 4 ALA C 83 ALA C 90 -1 O ALA C 83 N LEU C 104 SHEET 4 CA 4 VAL C 97 PHE C 98 1 O VAL C 97 N ALA C 89 SHEET 1 CB 5 SER C 9 VAL C 12 0 SHEET 2 CB 5 THR C 102 VAL C 106 1 O LYS C 103 N VAL C 10 SHEET 3 CB 5 ALA C 83 ALA C 90 -1 O ALA C 83 N LEU C 104 SHEET 4 CB 5 TYR C 31 GLN C 37 -1 O TYR C 31 N ALA C 90 SHEET 5 CB 5 VAL C 44 ILE C 47 -1 O VAL C 44 N GLN C 36 SHEET 1 CC 2 VAL C 97 PHE C 98 0 SHEET 2 CC 2 ALA C 83 ALA C 90 1 O ALA C 89 N VAL C 97 SHEET 1 CD 3 ALA C 18 SER C 23 0 SHEET 2 CD 3 THR C 69 ILE C 74 -1 O ALA C 70 N CYS C 22 SHEET 3 CD 3 PHE C 61 SER C 66 -1 O SER C 62 N THR C 73 SHEET 1 DA 4 SER D 9 VAL D 12 0 SHEET 2 DA 4 THR D 102 VAL D 106 1 O LYS D 103 N VAL D 10 SHEET 3 DA 4 ALA D 83 ALA D 90 -1 O ALA D 83 N LEU D 104 SHEET 4 DA 4 VAL D 97 PHE D 98 1 O VAL D 97 N ALA D 89 SHEET 1 DB 5 SER D 9 VAL D 12 0 SHEET 2 DB 5 THR D 102 VAL D 106 1 O LYS D 103 N VAL D 10 SHEET 3 DB 5 ALA D 83 ALA D 90 -1 O ALA D 83 N LEU D 104 SHEET 4 DB 5 TYR D 31 GLN D 37 -1 O TYR D 31 N ALA D 90 SHEET 5 DB 5 VAL D 44 ILE D 47 -1 O VAL D 44 N GLN D 36 SHEET 1 DC 2 VAL D 97 PHE D 98 0 SHEET 2 DC 2 ALA D 83 ALA D 90 1 O ALA D 89 N VAL D 97 SHEET 1 DD 3 ALA D 18 SER D 23 0 SHEET 2 DD 3 THR D 69 ILE D 74 -1 O ALA D 70 N CYS D 22 SHEET 3 DD 3 PHE D 61 SER D 66 -1 O SER D 62 N THR D 73 SSBOND 1 CYS A 22 CYS A 87 1555 1555 2.05 SSBOND 2 CYS B 22 CYS B 87 1555 1555 2.04 SSBOND 3 CYS C 22 CYS C 87 1555 1555 2.05 SSBOND 4 CYS D 22 CYS D 87 1555 1555 2.03 CISPEP 1 SER A 92 SER A 93 0 17.38 CISPEP 2 THR A 94 ALA A 95 0 6.77 CISPEP 3 ASP D 25 LYS D 26 0 -2.97 CISPEP 4 SER D 92 SER D 93 0 4.15 SITE 1 AC1 6 TYR A 33 TYR A 35 GLN A 88 ALA A 90 SITE 2 AC1 6 VAL A 96 HOH A2111 SITE 1 AC2 4 TYR C 33 GLN C 88 ALA C 90 VAL C 96 SITE 1 AC3 4 TYR C 48 LYS C 52 SER D 55 GLY D 56 CRYST1 41.807 41.807 171.035 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023919 0.013810 0.000000 0.00000 SCALE2 0.000000 0.027620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005847 0.00000