PDB Short entry for 4ALD HEADER LYASE 26-JUL-98 4ALD TITLE HUMAN MUSCLE FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE COMPLEXED WITH TITLE 2 FRUCTOSE 1,6-BISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.13; COMPND 5 OTHER_DETAILS: HYDROGEN BONDED COMPLEX TO FRUCTOSE 1,6-BISPHOSPHATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: SKELETAL; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 OTHER_DETAILS: LEG TISSUE KEYWDS LYASE (ALDEHYDE), COMPLEX, TYPE 1 ALDOLASE, TIM BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.DALBY,Z.DAUTER,J.A.LITTLECHILD REVDAT 7 28-FEB-24 4ALD 1 REMARK REVDAT 6 13-JUL-11 4ALD 1 VERSN REVDAT 5 23-JUN-10 4ALD 1 HETATM REVDAT 4 24-FEB-09 4ALD 1 VERSN REVDAT 3 23-AUG-99 4ALD 3 HETATM REVDAT 2 20-APR-99 4ALD 3 HET COMPND REMARK HETATM REVDAT 2 2 3 DBREF CISPEP HEADER TER REVDAT 2 3 3 ATOM SEQRES SITE FORMUL REVDAT 2 4 3 JRNL SHEET HELIX CONECT REVDAT 2 5 3 HETNAM REVDAT 1 02-MAR-99 4ALD 0 JRNL AUTH A.DALBY,Z.DAUTER,J.A.LITTLECHILD JRNL TITL CRYSTAL STRUCTURE OF HUMAN MUSCLE ALDOLASE COMPLEXED WITH JRNL TITL 2 FRUCTOSE 1,6-BISPHOSPHATE: MECHANISTIC IMPLICATIONS. JRNL REF PROTEIN SCI. V. 8 291 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10048322 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.J.GAMBLIN,G.J.DAVIES,J.M.GRIMES,R.M.JACKSON, REMARK 1 AUTH 2 J.A.LITTLECHILD,H.C.WATSON REMARK 1 TITL ACTIVITY AND SPECIFICITY OF HUMAN ALDOLASES REMARK 1 REF J.MOL.BIOL. V. 219 573 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.J.GAMBLIN,B.COOPER,J.R.MILLAR,G.J.DAVIES,J.A.LITTLECHILD, REMARK 1 AUTH 2 H.C.WATSON REMARK 1 TITL THE CRYSTAL STRUCTURE OF HUMAN MUSCLE ALDOLASE AT 3.0 A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF FEBS LETT. V. 262 282 1990 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.SYGUSCH,D.BEAUDRY,M.ALLAIRE REMARK 1 TITL MOLECULAR ARCHITECTURE OF RABBIT SKELETAL MUSCLE ALDOLASE AT REMARK 1 TITL 2 2.7-A RESOLUTION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 84 7846 1987 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 10539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 548 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.650 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.440 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.100 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.028 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.078 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.112 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.224 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.282 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.201 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 15.400; 7.000 REMARK 3 STAGGERED (DEGREES) : 24.600; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 30.900; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ALD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.63333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.26667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.63333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.26667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.63333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 111.26667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 55.63333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 111.26667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -48.25000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 83.57145 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 111.26667 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -48.25000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 83.57145 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 111.26667 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 126 N GLY A 126 CA -0.092 REMARK 500 SER A 175 CB SER A 175 OG -0.080 REMARK 500 SER A 308 CB SER A 308 OG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 1 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 TYR A 2 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 TYR A 2 CB - CG - CD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 TYR A 2 CA - C - O ANGL. DEV. = 13.2 DEGREES REMARK 500 TYR A 2 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 GLN A 3 C - N - CA ANGL. DEV. = 26.6 DEGREES REMARK 500 ALA A 6 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 GLU A 14 CG - CD - OE2 ANGL. DEV. = 12.1 DEGREES REMARK 500 SER A 16 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 SER A 16 N - CA - CB ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP A 17 N - CA - CB ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 17 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 17 CA - C - O ANGL. DEV. = -13.1 DEGREES REMARK 500 ARG A 21 CD - NE - CZ ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG A 21 NH1 - CZ - NH2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -9.4 DEGREES REMARK 500 LYS A 27 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 ALA A 32 CB - CA - C ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP A 33 OD1 - CG - OD2 ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 33 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 42 CG - CD - NE ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 43 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU A 43 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 GLN A 44 CA - C - O ANGL. DEV. = 15.0 DEGREES REMARK 500 GLN A 44 O - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 SER A 45 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 SER A 45 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 GLU A 49 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 GLU A 53 CG - CD - OE1 ANGL. DEV. = 17.1 DEGREES REMARK 500 GLU A 53 CG - CD - OE2 ANGL. DEV. = -13.0 DEGREES REMARK 500 ASN A 54 CB - CG - OD1 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 59 CD - NE - CZ ANGL. DEV. = 38.8 DEGREES REMARK 500 ARG A 59 NH1 - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = 10.7 DEGREES REMARK 500 LEU A 61 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 LEU A 62 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 LEU A 62 CB - CG - CD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 LEU A 62 CA - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 LEU A 62 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 THR A 64 CA - CB - CG2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 67 CB - CG - OD1 ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 68 CD - NE - CZ ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG A 68 NH1 - CZ - NH2 ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 213 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 5 122.19 -32.58 REMARK 500 GLU A 34 133.33 -31.72 REMARK 500 THR A 51 -168.65 -128.20 REMARK 500 LYS A 100 35.15 -95.64 REMARK 500 PRO A 235 -174.86 -62.10 REMARK 500 LEU A 291 143.45 -37.92 REMARK 500 SER A 345 83.51 2.48 REMARK 500 GLN A 347 96.03 52.03 REMARK 500 ALA A 350 -108.44 130.43 REMARK 500 SER A 359 122.60 -38.85 REMARK 500 HIS A 361 -81.06 7.83 REMARK 500 ALA A 362 -123.32 168.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 78 PHE A 79 148.79 REMARK 500 ALA A 350 ALA A 351 144.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 4 12.24 REMARK 500 PRO A 5 -14.26 REMARK 500 THR A 8 -19.54 REMARK 500 LEU A 15 -13.40 REMARK 500 VAL A 23 -12.89 REMARK 500 ASN A 50 15.22 REMARK 500 ARG A 68 10.60 REMARK 500 LEU A 83 12.98 REMARK 500 TYR A 84 13.35 REMARK 500 SER A 99 -12.85 REMARK 500 LYS A 100 -11.90 REMARK 500 VAL A 103 13.73 REMARK 500 GLY A 105 -29.21 REMARK 500 VAL A 108 -10.62 REMARK 500 ASN A 119 10.47 REMARK 500 GLU A 121 10.59 REMARK 500 THR A 122 12.89 REMARK 500 THR A 124 14.29 REMARK 500 GLY A 129 -11.36 REMARK 500 LYS A 138 -12.82 REMARK 500 LYS A 139 -16.87 REMARK 500 ASP A 140 10.32 REMARK 500 HIS A 156 10.07 REMARK 500 THR A 157 -11.09 REMARK 500 MET A 164 -16.29 REMARK 500 GLY A 181 11.99 REMARK 500 ILE A 190 -17.97 REMARK 500 ASP A 195 -13.44 REMARK 500 VAL A 204 -11.37 REMARK 500 LYS A 207 -11.21 REMARK 500 VAL A 212 11.53 REMARK 500 SER A 217 -12.66 REMARK 500 ILE A 221 15.69 REMARK 500 PRO A 235 -12.70 REMARK 500 THR A 240 -13.31 REMARK 500 LYS A 242 11.02 REMARK 500 LEU A 256 -14.78 REMARK 500 THR A 259 10.04 REMARK 500 VAL A 260 -11.26 REMARK 500 PRO A 262 -15.35 REMARK 500 VAL A 264 -14.05 REMARK 500 GLY A 266 11.68 REMARK 500 GLY A 272 19.92 REMARK 500 ALA A 279 25.53 REMARK 500 ILE A 281 -11.15 REMARK 500 ASN A 282 -11.12 REMARK 500 ASN A 287 -15.98 REMARK 500 PRO A 290 10.38 REMARK 500 LEU A 292 17.12 REMARK 500 TYR A 301 13.63 REMARK 500 REMARK 500 THIS ENTRY HAS 57 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: SBL REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: SCHIFF'S BASE LYSINE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2FP A 364 DBREF 4ALD A 1 363 UNP P04075 ALDOA_HUMAN 1 363 SEQRES 1 A 363 PRO TYR GLN TYR PRO ALA LEU THR PRO GLU GLN LYS LYS SEQRES 2 A 363 GLU LEU SER ASP ILE ALA HIS ARG ILE VAL ALA PRO GLY SEQRES 3 A 363 LYS GLY ILE LEU ALA ALA ASP GLU SER THR GLY SER ILE SEQRES 4 A 363 ALA LYS ARG LEU GLN SER ILE GLY THR GLU ASN THR GLU SEQRES 5 A 363 GLU ASN ARG ARG PHE TYR ARG GLN LEU LEU LEU THR ALA SEQRES 6 A 363 ASP ASP ARG VAL ASN PRO CYS ILE GLY GLY VAL ILE LEU SEQRES 7 A 363 PHE HIS GLU THR LEU TYR GLN LYS ALA ASP ASP GLY ARG SEQRES 8 A 363 PRO PHE PRO GLN VAL ILE LYS SER LYS GLY GLY VAL VAL SEQRES 9 A 363 GLY ILE LYS VAL ASP LYS GLY VAL VAL PRO LEU ALA GLY SEQRES 10 A 363 THR ASN GLY GLU THR THR THR GLN GLY LEU ASP GLY LEU SEQRES 11 A 363 SER GLU ARG CYS ALA GLN TYR LYS LYS ASP GLY ALA ASP SEQRES 12 A 363 PHE ALA LYS TRP ARG CYS VAL LEU LYS ILE GLY GLU HIS SEQRES 13 A 363 THR PRO SER ALA LEU ALA ILE MET GLU ASN ALA ASN VAL SEQRES 14 A 363 LEU ALA ARG TYR ALA SER ILE CYS GLN GLN ASN GLY ILE SEQRES 15 A 363 VAL PRO ILE VAL GLU PRO GLU ILE LEU PRO ASP GLY ASP SEQRES 16 A 363 HIS ASP LEU LYS ARG CYS GLN TYR VAL THR GLU LYS VAL SEQRES 17 A 363 LEU ALA ALA VAL TYR LYS ALA LEU SER ASP HIS HIS ILE SEQRES 18 A 363 TYR LEU GLU GLY THR LEU LEU LYS PRO ASN MET VAL THR SEQRES 19 A 363 PRO GLY HIS ALA CYS THR GLN LYS PHE SER HIS GLU GLU SEQRES 20 A 363 ILE ALA MET ALA THR VAL THR ALA LEU ARG ARG THR VAL SEQRES 21 A 363 PRO PRO ALA VAL THR GLY ILE THR PHE LEU SER GLY GLY SEQRES 22 A 363 GLN SER GLU GLU GLU ALA SER ILE ASN LEU ASN ALA ILE SEQRES 23 A 363 ASN LYS CYS PRO LEU LEU LYS PRO TRP ALA LEU THR PHE SEQRES 24 A 363 SER TYR GLY ARG ALA LEU GLN ALA SER ALA LEU LYS ALA SEQRES 25 A 363 TRP GLY GLY LYS LYS GLU ASN LEU LYS ALA ALA GLN GLU SEQRES 26 A 363 GLU TYR VAL LYS ARG ALA LEU ALA ASN SER LEU ALA CYS SEQRES 27 A 363 GLN GLY LYS TYR THR PRO SER GLY GLN ALA GLY ALA ALA SEQRES 28 A 363 ALA SER GLU SER LEU PHE VAL SER ASN HIS ALA TYR HET 2FP A 364 20 HETNAM 2FP 1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM) FORMUL 2 2FP C6 H14 O12 P2 HELIX 1 1 PRO A 9 ILE A 22 1 14 HELIX 2 2 THR A 36 ILE A 46 1 11 HELIX 3 3 GLU A 52 LEU A 63 1 12 HELIX 4 4 ASN A 70 CYS A 72 5 3 HELIX 5 5 HIS A 80 TYR A 84 1 5 HELIX 6 6 PHE A 93 LYS A 100 1 8 HELIX 7 7 LEU A 130 LYS A 139 1 10 HELIX 8 8 ALA A 160 ASN A 180 1 21 HELIX 9 9 LEU A 198 ASP A 218 1 21 HELIX 10 10 LEU A 223 GLY A 225 5 3 HELIX 11 11 HIS A 245 ARG A 257 1 13 HELIX 12 12 GLU A 276 LYS A 288 1 13 HELIX 13 13 ARG A 303 TRP A 313 1 11 HELIX 14 14 LYS A 317 GLN A 339 5 23 SHEET 1 A 6 THR A 226 LEU A 228 0 SHEET 2 A 6 VAL A 183 ILE A 190 1 N PRO A 184 O LEU A 227 SHEET 3 A 6 PHE A 144 LEU A 151 1 N ALA A 145 O VAL A 183 SHEET 4 A 6 VAL A 103 LYS A 107 1 N ILE A 106 O PHE A 144 SHEET 5 A 6 ILE A 73 LEU A 78 1 N VAL A 76 O VAL A 103 SHEET 6 A 6 GLY A 28 ALA A 32 1 N GLY A 28 O GLY A 74 SHEET 1 B 2 VAL A 112 PRO A 114 0 SHEET 2 B 2 THR A 122 THR A 124 -1 N THR A 123 O VAL A 113 SHEET 1 C 2 GLY A 266 PHE A 269 0 SHEET 2 C 2 ALA A 296 PHE A 299 1 N ALA A 296 O ILE A 267 CISPEP 1 THR A 157 PRO A 158 0 1.71 SITE 1 SBL 1 LYS A 229 SITE 1 AC1 18 ALA A 31 ASP A 33 GLU A 34 SER A 35 SITE 2 AC1 18 SER A 38 LYS A 107 LYS A 146 ARG A 148 SITE 3 AC1 18 GLU A 187 LYS A 229 LEU A 270 SER A 271 SITE 4 AC1 18 GLY A 272 SER A 300 TYR A 301 GLY A 302 SITE 5 AC1 18 ARG A 303 ALA A 304 CRYST1 96.500 96.500 166.900 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010363 0.005983 0.000000 0.00000 SCALE2 0.000000 0.011966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005992 0.00000