PDB Short entry for 4APF HEADER CELL CYCLE 02-APR-12 4APF TITLE CRYSTAL STRUCTURE OF THE HUMAN KLHL11-CUL3 COMPLEX AT 3.1A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE PROTEIN 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BTB DOMAIN, BACK DOMAIN, RESIDUES 67-340; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CULLIN 3; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 23-388; COMPND 10 SYNONYM: CUL-3; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3 PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF KEYWDS UBIQUITINATION, E3 LIGASE, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR P.CANNING,C.D.O.COOPER,T.KROJER,M.VOLLMAR,E.UGOCHUKWU,J.R.C.MUNIZ, AUTHOR 2 V.AYINAMPUDI,P.SAVITSKY,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,F.VON AUTHOR 3 DELFT,A.N.BULLOCK,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 24-JAN-18 4APF 1 AUTHOR JRNL REVDAT 3 27-MAR-13 4APF 1 JRNL REVDAT 2 06-FEB-13 4APF 1 AUTHOR JRNL REMARK REVDAT 1 09-MAY-12 4APF 0 JRNL AUTH P.CANNING,C.D.O.COOPER,T.KROJER,J.W.MURRAY,A.C.W.PIKE, JRNL AUTH 2 A.CHAIKUAD,T.KEATES,C.THANGARATNARAJAH,V.HOJZAN,B.D.MARSDEN, JRNL AUTH 3 O.GILEADI,S.KNAPP,F.VON DELFT,A.N.BULLOCK JRNL TITL STRUCTURAL BASIS FOR CUL3 ASSEMBLY WITH THE BTB-KELCH FAMILY JRNL TITL 2 OF E3 UBIQUITIN LIGASES. JRNL REF J.BIOL.CHEM. V. 288 7803 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23349464 JRNL DOI 10.1074/JBC.M112.437996 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 25015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2727 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2437 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2589 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.2995 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 127.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 115.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.88110 REMARK 3 B22 (A**2) : 0.70340 REMARK 3 B33 (A**2) : 2.17770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.94610 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.756 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.489 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.290 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.509 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.297 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4716 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6389 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2192 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 106 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 709 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4716 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 627 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5668 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.41 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.06 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 5.9293 -11.7473 -30.5535 REMARK 3 T TENSOR REMARK 3 T11: -0.1069 T22: -0.2004 REMARK 3 T33: -0.3055 T12: -0.2702 REMARK 3 T13: 0.0573 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.7871 L22: 1.7978 REMARK 3 L33: 9.1204 L12: -1.5340 REMARK 3 L13: -3.8923 L23: 2.1932 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: 0.5320 S13: -0.0851 REMARK 3 S21: -0.8023 S22: -0.0618 S23: 0.1575 REMARK 3 S31: 0.4028 S32: -0.8497 S33: 0.1125 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 42.8931 -9.9000 1.1496 REMARK 3 T TENSOR REMARK 3 T11: -0.2978 T22: -0.1216 REMARK 3 T33: -0.0969 T12: 0.0443 REMARK 3 T13: 0.1260 T23: -0.1310 REMARK 3 L TENSOR REMARK 3 L11: 3.1515 L22: 1.1521 REMARK 3 L33: 3.7190 L12: -0.9915 REMARK 3 L13: 2.5345 L23: -1.4957 REMARK 3 S TENSOR REMARK 3 S11: -0.0875 S12: -0.1697 S13: 0.1257 REMARK 3 S21: 0.0026 S22: 0.0078 S23: -0.1794 REMARK 3 S31: 0.0752 S32: 0.4016 S33: 0.0797 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NUMBER OF LIBRARIES USED : 8 REFINEMENT REMARK 3 NOTE 1: IDEAL-DIST CONTACT TERM CONTACT SETUP. ALL ATOM HAVE REMARK 3 CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4APF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290051967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9681 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25043 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: STATISTICS DERIVED FROM THE NATIVE DATASET. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M K CITRATE; 17% PEG 3350; 10% REMARK 280 ETHYLENE GLYCOL; PH 6.5 BIS TRIS PROPANE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 119.32000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 119.32000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ILE 342 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 346 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 HIS A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 HIS A 50 REMARK 465 SER A 51 REMARK 465 SER A 52 REMARK 465 GLY A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 LEU A 56 REMARK 465 GLY A 57 REMARK 465 THR A 58 REMARK 465 GLU A 59 REMARK 465 ASN A 60 REMARK 465 LEU A 61 REMARK 465 TYR A 62 REMARK 465 PHE A 63 REMARK 465 GLN A 64 REMARK 465 SER A 65 REMARK 465 MET A 66 REMARK 465 ALA A 103 REMARK 465 GLY A 104 REMARK 465 GLY A 105 REMARK 465 GLU A 334 REMARK 465 ASN A 335 REMARK 465 ILE A 336 REMARK 465 GLN A 337 REMARK 465 SER A 338 REMARK 465 GLY A 339 REMARK 465 THR A 340 REMARK 465 MET B 23 REMARK 465 THR B 24 REMARK 465 VAL B 329 REMARK 465 SER B 330 REMARK 465 GLU B 331 REMARK 465 GLU B 332 REMARK 465 GLY B 333 REMARK 465 GLU B 334 REMARK 465 GLY B 335 REMARK 465 LYS B 336 REMARK 465 ASN B 337 REMARK 465 PRO B 338 REMARK 465 VAL B 339 REMARK 465 ASP B 340 REMARK 465 TYR B 341 REMARK 465 ARG B 342 REMARK 465 LEU B 380 REMARK 465 ASN B 381 REMARK 465 SER B 382 REMARK 465 ARG B 383 REMARK 465 SER B 384 REMARK 465 PRO B 385 REMARK 465 GLU B 386 REMARK 465 TYR B 387 REMARK 465 LEU B 388 REMARK 465 ALA B 389 REMARK 465 GLU B 390 REMARK 465 ASN B 391 REMARK 465 LEU B 392 REMARK 465 TYR B 393 REMARK 465 PHE B 394 REMARK 465 GLN B 395 REMARK 465 SER B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 ASP B 403 REMARK 465 TYR B 404 REMARK 465 LYS B 405 REMARK 465 ASP B 406 REMARK 465 ASP B 407 REMARK 465 ASP B 408 REMARK 465 ASP B 409 REMARK 465 LYS B 410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 SER A 74 OG REMARK 470 SER A 75 OG REMARK 470 SER A 78 OG REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 SER A 113 OG REMARK 470 SER A 127 OG REMARK 470 SER A 131 OG REMARK 470 SER A 133 OG REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 SER A 135 OG REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 SER A 145 OG REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 168 CG1 CG2 REMARK 470 SER A 172 OG REMARK 470 HIS A 174 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 187 NE CZ NH1 NH2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 199 CD CE NZ REMARK 470 LEU A 202 CG CD1 CD2 REMARK 470 ASN A 204 CG OD1 ND2 REMARK 470 VAL A 206 CG1 CG2 REMARK 470 SER A 210 OG REMARK 470 THR A 216 OG1 CG2 REMARK 470 GLN A 219 CG CD OE1 NE2 REMARK 470 MET A 227 CG SD CE REMARK 470 ASN A 231 CG OD1 ND2 REMARK 470 HIS A 233 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 VAL A 235 CG1 CG2 REMARK 470 GLN A 237 CG CD OE1 NE2 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 ARG A 250 CZ NH1 NH2 REMARK 470 ASP A 261 CG OD1 OD2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 LEU A 271 CG CD1 CD2 REMARK 470 LYS A 272 CE NZ REMARK 470 GLN A 275 CG CD OE1 NE2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 277 CG OD1 ND2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 296 CG CD OE1 NE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 THR A 300 OG1 CG2 REMARK 470 THR A 303 OG1 CG2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ASN A 314 CG OD1 ND2 REMARK 470 ASN A 315 CG OD1 ND2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 LEU A 331 CG CD1 CD2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 LYS B 47 CE NZ REMARK 470 ASN B 49 CG OD1 ND2 REMARK 470 SER B 53 OG REMARK 470 THR B 82 OG1 CG2 REMARK 470 SER B 96 OG REMARK 470 ASN B 99 CG OD1 ND2 REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 GLN B 133 CG CD OE1 NE2 REMARK 470 ASN B 135 CG OD1 ND2 REMARK 470 CYS B 156 SG REMARK 470 ARG B 158 CZ NH1 NH2 REMARK 470 ASP B 167 CG OD1 OD2 REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 GLU B 176 CG CD OE1 OE2 REMARK 470 VAL B 177 CG1 CG2 REMARK 470 ARG B 184 NE CZ NH1 NH2 REMARK 470 GLN B 188 CG CD OE1 NE2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 SER B 199 OG REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 GLU B 246 CG CD OE1 OE2 REMARK 470 MET B 249 CG SD CE REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 LYS B 262 CE NZ REMARK 470 ILE B 269 CG1 CG2 CD1 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 ASN B 281 CG OD1 ND2 REMARK 470 LEU B 288 CG CD1 CD2 REMARK 470 ASN B 290 CG OD1 ND2 REMARK 470 LYS B 292 CE NZ REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 SER B 319 OG REMARK 470 GLU B 323 CG CD OE1 OE2 REMARK 470 LYS B 326 CG CD CE NZ REMARK 470 GLN B 343 CG CD OE1 NE2 REMARK 470 ASP B 346 CG OD1 OD2 REMARK 470 LYS B 349 CG CD CE NZ REMARK 470 LYS B 367 CG CD CE NZ REMARK 470 LEU B 378 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 76 -70.83 -36.63 REMARK 500 SER A 127 -76.84 -39.04 REMARK 500 LYS A 142 78.54 51.65 REMARK 500 LEU A 217 68.93 -105.01 REMARK 500 ARG A 276 -70.15 -52.65 REMARK 500 ASN A 277 53.90 -106.33 REMARK 500 PHE A 285 -51.65 -25.13 REMARK 500 ASP B 26 150.11 -47.99 REMARK 500 LYS B 47 68.07 61.69 REMARK 500 ASN B 48 30.43 -142.31 REMARK 500 VAL B 129 -64.49 -100.94 REMARK 500 GLN B 132 -71.71 -56.16 REMARK 500 VAL B 151 -77.89 -111.74 REMARK 500 TYR B 154 41.55 -87.65 REMARK 500 GLU B 176 158.63 -48.14 REMARK 500 LEU B 195 74.03 55.96 REMARK 500 PHE B 205 -62.22 -121.69 REMARK 500 CYS B 251 7.16 -152.17 REMARK 500 ILE B 269 -75.55 -96.11 REMARK 500 ASN B 281 17.61 46.50 REMARK 500 LYS B 292 84.43 -67.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AP2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN KLHL11-CUL3 COMPLEX AT 2.8A REMARK 900 RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 I342R AND L346D ARE MUTATIONS ENGINEERED AS PART OF THE REMARK 999 SPLIT-N-EXPRESS EXPRESSION STRATEGY. DBREF 4APF A 67 340 UNP Q9NVR0 KLH11_HUMAN 67 340 DBREF 4APF B 23 388 UNP Q13618 CUL3_HUMAN 23 388 SEQADV 4APF MET A 44 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF HIS A 45 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF HIS A 46 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF HIS A 47 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF HIS A 48 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF HIS A 49 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF HIS A 50 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF SER A 51 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF SER A 52 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF GLY A 53 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF VAL A 54 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF ASP A 55 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF LEU A 56 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF GLY A 57 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF THR A 58 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF GLU A 59 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF ASN A 60 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF LEU A 61 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF TYR A 62 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF PHE A 63 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF GLN A 64 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF SER A 65 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF MET A 66 UNP Q9NVR0 EXPRESSION TAG SEQADV 4APF ALA B 389 UNP Q13618 EXPRESSION TAG SEQADV 4APF GLU B 390 UNP Q13618 EXPRESSION TAG SEQADV 4APF ASN B 391 UNP Q13618 EXPRESSION TAG SEQADV 4APF LEU B 392 UNP Q13618 EXPRESSION TAG SEQADV 4APF TYR B 393 UNP Q13618 EXPRESSION TAG SEQADV 4APF PHE B 394 UNP Q13618 EXPRESSION TAG SEQADV 4APF GLN B 395 UNP Q13618 EXPRESSION TAG SEQADV 4APF SER B 396 UNP Q13618 EXPRESSION TAG SEQADV 4APF HIS B 397 UNP Q13618 EXPRESSION TAG SEQADV 4APF HIS B 398 UNP Q13618 EXPRESSION TAG SEQADV 4APF HIS B 399 UNP Q13618 EXPRESSION TAG SEQADV 4APF HIS B 400 UNP Q13618 EXPRESSION TAG SEQADV 4APF HIS B 401 UNP Q13618 EXPRESSION TAG SEQADV 4APF HIS B 402 UNP Q13618 EXPRESSION TAG SEQADV 4APF ASP B 403 UNP Q13618 EXPRESSION TAG SEQADV 4APF TYR B 404 UNP Q13618 EXPRESSION TAG SEQADV 4APF LYS B 405 UNP Q13618 EXPRESSION TAG SEQADV 4APF ASP B 406 UNP Q13618 EXPRESSION TAG SEQADV 4APF ASP B 407 UNP Q13618 EXPRESSION TAG SEQADV 4APF ASP B 408 UNP Q13618 EXPRESSION TAG SEQADV 4APF ASP B 409 UNP Q13618 EXPRESSION TAG SEQADV 4APF LYS B 410 UNP Q13618 EXPRESSION TAG SEQADV 4APF ARG B 342 UNP Q13618 ILE 342 ENGINEERED MUTATION SEQADV 4APF ASP B 346 UNP Q13618 LEU 346 ENGINEERED MUTATION SEQRES 1 A 297 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 297 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU ALA GLU SEQRES 3 A 297 ASP PHE GLU CYS SER SER HIS CYS SER GLU LEU SER TRP SEQRES 4 A 297 ARG GLN ASN GLU GLN ARG ARG GLN GLY LEU PHE CYS ASP SEQRES 5 A 297 ILE THR LEU CYS PHE GLY GLY ALA GLY GLY ARG GLU PHE SEQRES 6 A 297 ARG ALA HIS ARG SER VAL LEU ALA ALA ALA THR GLU TYR SEQRES 7 A 297 PHE THR PRO LEU LEU SER GLY GLN PHE SER GLU SER ARG SEQRES 8 A 297 SER GLY ARG VAL GLU MET ARG LYS TRP SER SER GLU PRO SEQRES 9 A 297 GLY PRO GLU PRO ASP THR VAL GLU ALA VAL ILE GLU TYR SEQRES 10 A 297 MET TYR THR GLY ARG ILE ARG VAL SER THR GLY SER VAL SEQRES 11 A 297 HIS GLU VAL LEU GLU LEU ALA ASP ARG PHE LEU LEU ILE SEQRES 12 A 297 ARG LEU LYS GLU PHE CYS GLY GLU PHE LEU LYS LYS LYS SEQRES 13 A 297 LEU HIS LEU SER ASN CYS VAL ALA ILE HIS SER LEU ALA SEQRES 14 A 297 HIS MET TYR THR LEU SER GLN LEU ALA LEU LYS ALA ALA SEQRES 15 A 297 ASP MET ILE ARG ARG ASN PHE HIS LYS VAL ILE GLN ASP SEQRES 16 A 297 GLU GLU PHE TYR THR LEU PRO PHE HIS LEU ILE ARG ASP SEQRES 17 A 297 TRP LEU SER ASP LEU GLU ILE THR VAL ASP SER GLU GLU SEQRES 18 A 297 VAL LEU PHE GLU THR VAL LEU LYS TRP VAL GLN ARG ASN SEQRES 19 A 297 ALA GLU GLU ARG GLU ARG TYR PHE GLU GLU LEU PHE LYS SEQRES 20 A 297 LEU LEU ARG LEU SER GLN MET LYS PRO THR TYR LEU THR SEQRES 21 A 297 ARG HIS VAL LYS PRO GLU ARG LEU VAL ALA ASN ASN GLU SEQRES 22 A 297 VAL CYS VAL LYS LEU VAL ALA ASP ALA VAL GLU ARG HIS SEQRES 23 A 297 ALA LEU ARG ALA GLU ASN ILE GLN SER GLY THR SEQRES 1 B 388 MET THR MET ASP GLU LYS TYR VAL ASN SER ILE TRP ASP SEQRES 2 B 388 LEU LEU LYS ASN ALA ILE GLN GLU ILE GLN ARG LYS ASN SEQRES 3 B 388 ASN SER GLY LEU SER PHE GLU GLU LEU TYR ARG ASN ALA SEQRES 4 B 388 TYR THR MET VAL LEU HIS LYS HIS GLY GLU LYS LEU TYR SEQRES 5 B 388 THR GLY LEU ARG GLU VAL VAL THR GLU HIS LEU ILE ASN SEQRES 6 B 388 LYS VAL ARG GLU ASP VAL LEU ASN SER LEU ASN ASN ASN SEQRES 7 B 388 PHE LEU GLN THR LEU ASN GLN ALA TRP ASN ASP HIS GLN SEQRES 8 B 388 THR ALA MET VAL MET ILE ARG ASP ILE LEU MET TYR MET SEQRES 9 B 388 ASP ARG VAL TYR VAL GLN GLN ASN ASN VAL GLU ASN VAL SEQRES 10 B 388 TYR ASN LEU GLY LEU ILE ILE PHE ARG ASP GLN VAL VAL SEQRES 11 B 388 ARG TYR GLY CYS ILE ARG ASP HIS LEU ARG GLN THR LEU SEQRES 12 B 388 LEU ASP MET ILE ALA ARG GLU ARG LYS GLY GLU VAL VAL SEQRES 13 B 388 ASP ARG GLY ALA ILE ARG ASN ALA CYS GLN MET LEU MET SEQRES 14 B 388 ILE LEU GLY LEU GLU GLY ARG SER VAL TYR GLU GLU ASP SEQRES 15 B 388 PHE GLU ALA PRO PHE LEU GLU MET SER ALA GLU PHE PHE SEQRES 16 B 388 GLN MET GLU SER GLN LYS PHE LEU ALA GLU ASN SER ALA SEQRES 17 B 388 SER VAL TYR ILE LYS LYS VAL GLU ALA ARG ILE ASN GLU SEQRES 18 B 388 GLU ILE GLU ARG VAL MET HIS CYS LEU ASP LYS SER THR SEQRES 19 B 388 GLU GLU PRO ILE VAL LYS VAL VAL GLU ARG GLU LEU ILE SEQRES 20 B 388 SER LYS HIS MET LYS THR ILE VAL GLU MET GLU ASN SER SEQRES 21 B 388 GLY LEU VAL HIS MET LEU LYS ASN GLY LYS THR GLU ASP SEQRES 22 B 388 LEU GLY CYS MET TYR LYS LEU PHE SER ARG VAL PRO ASN SEQRES 23 B 388 GLY LEU LYS THR MET CYS GLU CYS MET SER SER TYR LEU SEQRES 24 B 388 ARG GLU GLN GLY LYS ALA LEU VAL SER GLU GLU GLY GLU SEQRES 25 B 388 GLY LYS ASN PRO VAL ASP TYR ARG GLN GLY LEU ASP ASP SEQRES 26 B 388 LEU LYS SER ARG PHE ASP ARG PHE LEU LEU GLU SER PHE SEQRES 27 B 388 ASN ASN ASP ARG LEU PHE LYS GLN THR ILE ALA GLY ASP SEQRES 28 B 388 PHE GLU TYR PHE LEU ASN LEU ASN SER ARG SER PRO GLU SEQRES 29 B 388 TYR LEU ALA GLU ASN LEU TYR PHE GLN SER HIS HIS HIS SEQRES 30 B 388 HIS HIS HIS ASP TYR LYS ASP ASP ASP ASP LYS FORMUL 3 HOH *10(H2 O) HELIX 1 1 SER A 75 GLN A 90 1 16 HELIX 2 2 HIS A 111 THR A 119 1 9 HELIX 3 3 TYR A 121 GLY A 128 1 8 HELIX 4 4 SER A 131 GLY A 136 1 6 HELIX 5 5 GLU A 150 GLY A 164 1 15 HELIX 6 6 SER A 172 PHE A 183 1 12 HELIX 7 7 LEU A 185 LYS A 199 1 15 HELIX 8 8 SER A 203 TYR A 215 1 13 HELIX 9 9 LEU A 217 ASN A 231 1 15 HELIX 10 10 ASN A 231 ILE A 236 1 6 HELIX 11 11 ASP A 238 LEU A 244 5 7 HELIX 12 12 PRO A 245 SER A 254 1 10 HELIX 13 13 GLU A 263 ASN A 277 1 15 HELIX 14 14 ASN A 277 GLU A 282 1 6 HELIX 15 15 TYR A 284 LEU A 292 1 9 HELIX 16 16 ARG A 293 MET A 297 5 5 HELIX 17 17 LYS A 298 HIS A 305 1 8 HELIX 18 18 GLU A 309 ASN A 315 1 7 HELIX 19 19 ASN A 315 ARG A 332 1 18 HELIX 20 20 ASP B 26 ARG B 46 1 21 HELIX 21 21 ASN B 48 LEU B 52 5 5 HELIX 22 22 SER B 53 HIS B 67 1 15 HELIX 23 23 HIS B 69 LYS B 88 1 20 HELIX 24 24 LYS B 88 SER B 96 1 9 HELIX 25 25 ASN B 100 LEU B 123 1 24 HELIX 26 26 LEU B 123 VAL B 129 1 7 HELIX 27 27 VAL B 129 ASN B 134 1 6 HELIX 28 28 ASN B 138 VAL B 151 1 14 HELIX 29 29 GLY B 155 LYS B 174 1 20 HELIX 30 30 ASP B 179 LEU B 193 1 15 HELIX 31 31 ARG B 198 PHE B 205 1 8 HELIX 32 32 PHE B 205 ASN B 228 1 24 HELIX 33 33 SER B 229 LEU B 252 1 24 HELIX 34 34 ASP B 253 SER B 255 5 3 HELIX 35 35 THR B 256 ILE B 269 1 14 HELIX 36 36 HIS B 272 GLU B 278 1 7 HELIX 37 37 SER B 282 ASN B 290 1 9 HELIX 38 38 LYS B 292 SER B 304 1 13 HELIX 39 39 ASN B 308 LYS B 326 1 19 HELIX 40 40 GLY B 344 SER B 359 1 16 HELIX 41 41 ASP B 363 ASN B 379 1 17 SHEET 1 AA 3 GLU A 107 ALA A 110 0 SHEET 2 AA 3 ILE A 96 CYS A 99 -1 O ILE A 96 N ALA A 110 SHEET 3 AA 3 VAL A 138 GLU A 139 1 O VAL A 138 N CYS A 99 CRYST1 238.640 41.440 147.780 90.00 110.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004190 0.000000 0.001542 0.00000 SCALE2 0.000000 0.024131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007210 0.00000