PDB Short entry for 4ATM HEADER STRUCTURAL PROTEIN 08-MAY-12 4ATM TITLE CRYSTAL STRUCTURE OF THE BAR DOMAIN OF HUMAN AMPHIPHYSIN, ISOFORM 1 AT TITLE 2 1.8 ANGSTROM RESOLUTION FEATURING INCREASED ORDER AT THE N- TERMINUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMPHIPHYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-242; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS INVAGINATION, KNOBS-IN-HOLES, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.K.ALLERSTON,T.KROJER,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,C.BOUNTRA, AUTHOR 2 F.VON DELFT,O.GILEADI REVDAT 3 20-DEC-23 4ATM 1 REMARK REVDAT 2 05-DEC-12 4ATM 1 AUTHOR REVDAT 1 30-MAY-12 4ATM 0 SPRSDE 30-MAY-12 4ATM 4A3A JRNL AUTH C.K.ALLERSTON,T.KROJER,O.GILEADI JRNL TITL CRYSTAL STRUCTURE OF THE BAR DOMAIN OF HUMAN AMPHIPHYSIN, JRNL TITL 2 ISOFORM 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0219 - 4.0805 1.00 2745 134 0.1805 0.2025 REMARK 3 2 4.0805 - 3.2394 1.00 2656 128 0.1719 0.1965 REMARK 3 3 3.2394 - 2.8301 1.00 2596 163 0.1703 0.2177 REMARK 3 4 2.8301 - 2.5714 1.00 2579 150 0.1905 0.2248 REMARK 3 5 2.5714 - 2.3871 1.00 2602 122 0.1766 0.2098 REMARK 3 6 2.3871 - 2.2464 1.00 2598 133 0.1707 0.1889 REMARK 3 7 2.2464 - 2.1339 1.00 2561 139 0.1840 0.2050 REMARK 3 8 2.1339 - 2.0410 1.00 2595 138 0.1948 0.2366 REMARK 3 9 2.0410 - 1.9625 1.00 2534 142 0.2211 0.2615 REMARK 3 10 1.9625 - 1.8948 1.00 2583 137 0.2515 0.2865 REMARK 3 11 1.8948 - 1.8355 1.00 2568 122 0.2669 0.2932 REMARK 3 12 1.8355 - 1.7830 1.00 2548 160 0.2862 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 36.72 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.99320 REMARK 3 B22 (A**2) : 2.99320 REMARK 3 B33 (A**2) : -5.98640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1911 REMARK 3 ANGLE : 0.940 2574 REMARK 3 CHIRALITY : 0.066 276 REMARK 3 PLANARITY : 0.004 334 REMARK 3 DIHEDRAL : 13.610 734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 19:23) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1156 4.6546 44.9498 REMARK 3 T TENSOR REMARK 3 T11: 1.2090 T22: 1.1137 REMARK 3 T33: 0.6382 T12: 0.1407 REMARK 3 T13: -0.2940 T23: -0.2948 REMARK 3 L TENSOR REMARK 3 L11: 0.3873 L22: 1.7341 REMARK 3 L33: 3.2815 L12: -0.8187 REMARK 3 L13: 1.1272 L23: -2.3860 REMARK 3 S TENSOR REMARK 3 S11: 1.0680 S12: -3.5130 S13: 0.0288 REMARK 3 S21: 3.6990 S22: -0.2832 S23: -1.2931 REMARK 3 S31: 1.2714 S32: 2.0288 S33: -0.7602 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 24:84) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6992 -14.1226 4.2181 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.1848 REMARK 3 T33: 0.2088 T12: 0.0061 REMARK 3 T13: 0.0046 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.5607 L22: 2.9440 REMARK 3 L33: 9.2090 L12: 3.0036 REMARK 3 L13: 5.6333 L23: 5.1106 REMARK 3 S TENSOR REMARK 3 S11: -0.1721 S12: -0.1292 S13: 0.1546 REMARK 3 S21: -0.2319 S22: -0.0543 S23: 0.1109 REMARK 3 S31: -0.4673 S32: -0.2809 S33: 0.2878 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 85:116) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9573 -36.0251 -16.3183 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: 0.2145 REMARK 3 T33: 0.2477 T12: -0.0262 REMARK 3 T13: -0.0083 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.2022 L22: 2.9551 REMARK 3 L33: 8.1058 L12: 1.3163 REMARK 3 L13: 2.3414 L23: 2.9675 REMARK 3 S TENSOR REMARK 3 S11: 0.2006 S12: -0.0459 S13: -0.0377 REMARK 3 S21: 0.2279 S22: -0.2033 S23: 0.2097 REMARK 3 S31: 0.7103 S32: -0.6975 S33: 0.0237 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 117:157) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4062 -4.1540 25.1132 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.3224 REMARK 3 T33: 0.2851 T12: 0.0013 REMARK 3 T13: 0.0147 T23: -0.1255 REMARK 3 L TENSOR REMARK 3 L11: 0.3945 L22: 5.8621 REMARK 3 L33: 6.2316 L12: 2.6383 REMARK 3 L13: 3.2246 L23: 6.7847 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: -0.3334 S13: 0.2354 REMARK 3 S21: -0.0260 S22: -0.5214 S23: 0.3285 REMARK 3 S31: -0.0449 S32: -1.0145 S33: 0.4792 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 158:239) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9501 -19.4668 9.9799 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.1205 REMARK 3 T33: 0.1996 T12: -0.0461 REMARK 3 T13: 0.0529 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.3446 L22: 3.4801 REMARK 3 L33: 6.0359 L12: 0.8395 REMARK 3 L13: 1.3199 L23: 4.2942 REMARK 3 S TENSOR REMARK 3 S11: 0.1250 S12: -0.0519 S13: 0.0380 REMARK 3 S21: 0.5225 S22: -0.1042 S23: 0.0189 REMARK 3 S31: 0.5442 S32: -0.1954 S33: 0.0063 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ATM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 37.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: PDB ENTRY 3SOG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M CITRATE PH 5.5, PH REMARK 280 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.72667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.86333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.86333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.72667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -28.86333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2037 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2082 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 GLY A 7 REMARK 465 ILE A 8 REMARK 465 PHE A 9 REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 ASN A 12 REMARK 465 VAL A 13 REMARK 465 GLN A 14 REMARK 465 LYS A 15 REMARK 465 ARG A 16 REMARK 465 LEU A 17 REMARK 465 ASN A 18 REMARK 465 ASP A 240 REMARK 465 LYS A 241 REMARK 465 ALA A 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CZ NH1 NH2 REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 27 CE NZ REMARK 470 GLN A 44 CD OE1 NE2 REMARK 470 LYS A 47 CE NZ REMARK 470 ARG A 48 NE CZ NH1 NH2 REMARK 470 LYS A 76 NZ REMARK 470 GLU A 93 OE1 OE2 REMARK 470 LYS A 112 CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 168 CD CE NZ REMARK 470 LYS A 175 NZ REMARK 470 LYS A 178 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 63 OE2 GLU A 213 2.14 REMARK 500 O HOH A 2219 O HOH A 2220 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2084 O HOH A 2231 3554 1.99 REMARK 500 OH TYR A 42 O HOH A 2220 4655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 20 -143.99 54.85 REMARK 500 GLN A 21 1.77 -65.26 REMARK 500 GLU A 116 -88.31 -108.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KY7 RELATED DB: PDB REMARK 900 THE AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX REMARK 900 WITHAMPHIPHYSIN FXDXF REMARK 900 RELATED ID: 1UTC RELATED DB: PDB REMARK 900 CLATHRIN TERMINAL DOMAIN COMPLEXED WITH TLPWDLWTT REMARK 900 RELATED ID: 4A3A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BAR DOMAIN OF HUMAN AMPHIPHYSIN, ISOFORM 1 REMARK 900 AT 1.8 ANGSTROM RESOLUTION FEATURING INCREASED ORDER AT THE N- REMARK 900 TERMINUS. REMARK 999 REMARK 999 SEQUENCE REMARK 999 G116E MUTATION DERIVED DURING PCR DBREF 4ATM A 1 242 UNP P49418 AMPH_HUMAN 1 242 SEQADV 4ATM SER A 0 UNP P49418 EXPRESSION TAG SEQADV 4ATM GLU A 116 UNP P49418 GLY 116 CLONING ARTIFACT SEQRES 1 A 243 SER MET ALA ASP ILE LYS THR GLY ILE PHE ALA LYS ASN SEQRES 2 A 243 VAL GLN LYS ARG LEU ASN ARG ALA GLN GLU LYS VAL LEU SEQRES 3 A 243 GLN LYS LEU GLY LYS ALA ASP GLU THR LYS ASP GLU GLN SEQRES 4 A 243 PHE GLU GLU TYR VAL GLN ASN PHE LYS ARG GLN GLU ALA SEQRES 5 A 243 GLU GLY THR ARG LEU GLN ARG GLU LEU ARG GLY TYR LEU SEQRES 6 A 243 ALA ALA ILE LYS GLY MET GLN GLU ALA SER MET LYS LEU SEQRES 7 A 243 THR GLU SER LEU HIS GLU VAL TYR GLU PRO ASP TRP TYR SEQRES 8 A 243 GLY ARG GLU ASP VAL LYS MET VAL GLY GLU LYS CYS ASP SEQRES 9 A 243 VAL LEU TRP GLU ASP PHE HIS GLN LYS LEU VAL ASP GLU SEQRES 10 A 243 SER LEU LEU THR LEU ASP THR TYR LEU GLY GLN PHE PRO SEQRES 11 A 243 ASP ILE LYS ASN ARG ILE ALA LYS ARG SER ARG LYS LEU SEQRES 12 A 243 VAL ASP TYR ASP SER ALA ARG HIS HIS LEU GLU ALA LEU SEQRES 13 A 243 GLN SER SER LYS ARG LYS ASP GLU SER ARG ILE SER LYS SEQRES 14 A 243 ALA GLU GLU GLU PHE GLN LYS ALA GLN LYS VAL PHE GLU SEQRES 15 A 243 GLU PHE ASN VAL ASP LEU GLN GLU GLU LEU PRO SER LEU SEQRES 16 A 243 TRP SER ARG ARG VAL GLY PHE TYR VAL ASN THR PHE LYS SEQRES 17 A 243 ASN VAL SER SER LEU GLU ALA LYS PHE HIS LYS GLU ILE SEQRES 18 A 243 ALA VAL LEU CYS HIS LYS LEU TYR GLU VAL MET THR LYS SEQRES 19 A 243 LEU GLY ASP GLN HIS ALA ASP LYS ALA HET EDO A1240 4 HET EDO A1241 4 HET GOL A1242 6 HET EDO A1243 4 HET EDO A1244 4 HET EDO A1245 4 HET GOL A1246 6 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 9 HOH *233(H2 O) HELIX 1 1 ARG A 19 GLU A 22 5 4 HELIX 2 2 LYS A 23 TYR A 85 1 63 HELIX 3 3 GLY A 91 GLU A 116 1 26 HELIX 4 4 GLU A 116 GLN A 127 1 12 HELIX 5 5 GLN A 127 SER A 157 1 31 HELIX 6 6 ASP A 162 ARG A 197 1 36 HELIX 7 7 ARG A 197 HIS A 238 1 42 SITE 1 AC1 8 TYR A 42 ASN A 45 PRO A 192 TRP A 195 SITE 2 AC1 8 HOH A2038 HOH A2189 HOH A2219 HOH A2227 SITE 1 AC2 4 ASP A 32 TYR A 145 ASP A 146 ARG A 149 SITE 1 AC3 9 GLU A 72 HIS A 151 LEU A 155 ARG A 165 SITE 2 AC3 9 LYS A 168 ALA A 169 GLU A 172 EDO A1245 SITE 3 AC3 9 HOH A2228 SITE 1 AC4 5 LEU A 28 ASP A 32 TYR A 145 GLN A 177 SITE 2 AC4 5 GLU A 181 SITE 1 AC5 5 ILE A 135 ALA A 136 SER A 139 HOH A2148 SITE 2 AC5 5 HOH A2230 SITE 1 AC6 5 GLU A 72 LYS A 168 GOL A1242 HOH A2231 SITE 2 AC6 5 HOH A2232 SITE 1 AC7 10 THR A 78 VAL A 98 CYS A 102 SER A 210 SITE 2 AC7 10 GLU A 213 CYS A 224 LEU A 227 HOH A2205 SITE 3 AC7 10 HOH A2206 HOH A2233 CRYST1 82.390 82.390 86.590 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012137 0.007008 0.000000 0.00000 SCALE2 0.000000 0.014015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011549 0.00000