PDB Short entry for 4AVW HEADER TRANSFERASE 29-MAY-12 4AVW TITLE CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH TIQ-A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANKYRASE-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT, RESIDUES 946-1162; COMPND 5 SYNONYM: TANK2, POLY [ADP-RIBOSE] POLYMERASE 5B, TNKS-2, TRF1- COMPND 6 INTERACTING ANKYRIN-RELATED ADP-RIBOSE POLYMERASE 2, TANKYRASE II, COMPND 7 TANKYRASE-LIKE PROTEIN, TANKYRASE-RELATED PROTEIN; COMPND 8 EC: 2.4.2.30; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS TRANSFERASE, TRANSFERASE INHIBITOR COMPLEX, PROTEIN-LIGAND COMPLEX, KEYWDS 2 DIPHTHERIA TOXIN LIKE FOLD, ADP-RIBOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR T.HAIKARAINEN,M.NARWAL,L.LEHTIO REVDAT 6 30-JAN-19 4AVW 1 REMARK REVDAT 5 09-AUG-17 4AVW 1 REMARK REVDAT 4 18-JUN-14 4AVW 1 JRNL REVDAT 3 11-JUN-14 4AVW 1 JRNL REVDAT 2 15-JAN-14 4AVW 1 JRNL REVDAT 1 13-JUN-12 4AVW 0 JRNL AUTH T.HAIKARAINEN,M.NARWAL,P.JOENSUU,L.LEHTIO JRNL TITL EVALUATION AND STRUCTURAL BASIS FOR THE INHIBITION OF JRNL TITL 2 TANKYRASES BY PARP INHIBITORS JRNL REF ACS MED.CHEM.LETT. V. 5 18 2014 JRNL REFN ISSN 1948-5875 JRNL PMID 24900770 JRNL DOI 10.1021/ML400292S REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 27534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.593 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3525 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2450 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4745 ; 1.500 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5893 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 419 ; 6.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;32.967 ;22.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 580 ;13.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.510 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3943 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 787 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : BENT MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 66.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LISO4, 0.1 M TRIS HCL, 22 % PEG REMARK 280 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.97500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.97500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.99500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.99500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.97500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.78500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.99500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.97500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.78500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.99500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2057 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2039 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 923 REMARK 465 HIS A 924 REMARK 465 HIS A 925 REMARK 465 HIS A 926 REMARK 465 HIS A 927 REMARK 465 HIS A 928 REMARK 465 HIS A 929 REMARK 465 SER A 930 REMARK 465 SER A 931 REMARK 465 GLY A 932 REMARK 465 VAL A 933 REMARK 465 ASP A 934 REMARK 465 LEU A 935 REMARK 465 GLY A 936 REMARK 465 THR A 937 REMARK 465 GLU A 938 REMARK 465 ASN A 939 REMARK 465 LEU A 940 REMARK 465 TYR A 941 REMARK 465 PHE A 942 REMARK 465 GLN A 943 REMARK 465 SER A 944 REMARK 465 MET A 945 REMARK 465 LEU A 946 REMARK 465 ASN A 947 REMARK 465 THR A 948 REMARK 465 SER A 949 REMARK 465 GLY A 950 REMARK 465 SER A 951 REMARK 465 MET A 1113 REMARK 465 LYS A 1114 REMARK 465 GLY A 1162 REMARK 465 MET B 923 REMARK 465 HIS B 924 REMARK 465 HIS B 925 REMARK 465 HIS B 926 REMARK 465 HIS B 927 REMARK 465 HIS B 928 REMARK 465 HIS B 929 REMARK 465 SER B 930 REMARK 465 SER B 931 REMARK 465 GLY B 932 REMARK 465 VAL B 933 REMARK 465 ASP B 934 REMARK 465 LEU B 935 REMARK 465 GLY B 936 REMARK 465 THR B 937 REMARK 465 GLU B 938 REMARK 465 ASN B 939 REMARK 465 LEU B 940 REMARK 465 TYR B 941 REMARK 465 PHE B 942 REMARK 465 GLN B 943 REMARK 465 SER B 944 REMARK 465 MET B 945 REMARK 465 LEU B 946 REMARK 465 ASN B 947 REMARK 465 THR B 948 REMARK 465 SER B 949 REMARK 465 GLY B 950 REMARK 465 SER B 951 REMARK 465 GLY B 1162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B1114 CA C O CB CG CD CE REMARK 470 LYS B1114 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 984 CG HIS A 984 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1020 57.27 -145.80 REMARK 500 HIS A1021 53.78 39.46 REMARK 500 SER A1033 142.03 -171.45 REMARK 500 VAL A1131 -64.22 -143.51 REMARK 500 SER B1033 144.92 -171.48 REMARK 500 GLU B1046 -33.92 -39.49 REMARK 500 PRO B1120 126.01 -35.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1081 SG REMARK 620 2 CYS A1089 SG 111.8 REMARK 620 3 HIS A1084 ND1 104.6 109.4 REMARK 620 4 CYS A1092 SG 115.5 115.1 98.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1084 ND1 REMARK 620 2 CYS B1089 SG 103.2 REMARK 620 3 CYS B1092 SG 105.1 115.1 REMARK 620 4 CYS B1081 SG 105.3 107.9 118.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G18 A 2162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 2167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G18 B 2162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2164 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2165 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2166 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 2167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y0I RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH TANKYRASE-2 (TNKS2) REMARK 900 FRAGMENT PEPTIDE (21-MER) REMARK 900 RELATED ID: 4AVU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH 6(5H)- REMARK 900 PHENANTHRIDINONE DBREF 4AVW A 946 1162 UNP Q9H2K2 TNKS2_HUMAN 946 1162 DBREF 4AVW B 946 1162 UNP Q9H2K2 TNKS2_HUMAN 946 1162 SEQADV 4AVW MET A 923 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS A 924 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS A 925 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS A 926 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS A 927 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS A 928 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS A 929 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW SER A 930 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW SER A 931 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW GLY A 932 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW VAL A 933 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW ASP A 934 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW LEU A 935 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW GLY A 936 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW THR A 937 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW GLU A 938 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW ASN A 939 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW LEU A 940 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW TYR A 941 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW PHE A 942 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW GLN A 943 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW SER A 944 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW MET A 945 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW MET B 923 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS B 924 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS B 925 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS B 926 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS B 927 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS B 928 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW HIS B 929 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW SER B 930 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW SER B 931 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW GLY B 932 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW VAL B 933 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW ASP B 934 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW LEU B 935 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW GLY B 936 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW THR B 937 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW GLU B 938 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW ASN B 939 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW LEU B 940 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW TYR B 941 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW PHE B 942 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW GLN B 943 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW SER B 944 UNP Q9H2K2 EXPRESSION TAG SEQADV 4AVW MET B 945 UNP Q9H2K2 EXPRESSION TAG SEQRES 1 A 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 240 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ASN THR SEQRES 3 A 240 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP SEQRES 4 A 240 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 5 A 240 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY SEQRES 6 A 240 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL SEQRES 7 A 240 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG SEQRES 8 A 240 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU SEQRES 9 A 240 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE SEQRES 10 A 240 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 11 A 240 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 12 A 240 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 13 A 240 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE SEQRES 14 A 240 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY SEQRES 15 A 240 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS SEQRES 16 A 240 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER SEQRES 17 A 240 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG SEQRES 18 A 240 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 19 A 240 ILE MET ARG PRO GLU GLY SEQRES 1 B 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 240 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ASN THR SEQRES 3 B 240 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP SEQRES 4 B 240 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 5 B 240 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY SEQRES 6 B 240 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL SEQRES 7 B 240 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG SEQRES 8 B 240 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU SEQRES 9 B 240 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE SEQRES 10 B 240 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 11 B 240 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 12 B 240 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 13 B 240 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE SEQRES 14 B 240 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY SEQRES 15 B 240 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS SEQRES 16 B 240 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER SEQRES 17 B 240 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG SEQRES 18 B 240 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 19 B 240 ILE MET ARG PRO GLU GLY HET G18 A2162 14 HET ZN A2163 1 HET GOL A2164 6 HET SO4 A2165 5 HET SO4 A2166 5 HET PEG A2167 7 HET G18 B2162 14 HET ZN B2163 1 HET GOL B2164 6 HET SO4 B2165 5 HET SO4 B2166 5 HET PEG B2167 7 HETNAM G18 4H-THIENO[2,3-C]ISOQUINOLIN-5-ONE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 G18 2(C11 H7 N O S) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 SO4 4(O4 S 2-) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 15 HOH *189(H2 O) HELIX 1 1 ASP A 962 THR A 975 1 14 HELIX 2 2 ASN A 1002 GLU A 1019 1 18 HELIX 3 3 PHE A 1035 GLY A 1043 1 9 HELIX 4 4 ASP A 1045 ALA A 1049 5 5 HELIX 5 5 ASN A 1064 GLN A 1070 1 7 HELIX 6 6 GLY A 1074 GLY A 1078 5 5 HELIX 7 7 ARG A 1143 GLU A 1145 5 3 HELIX 8 8 ASP B 962 THR B 975 1 14 HELIX 9 9 ASN B 1002 ASN B 1020 1 19 HELIX 10 10 PHE B 1035 GLY B 1043 1 9 HELIX 11 11 ASP B 1045 ALA B 1049 5 5 HELIX 12 12 ASN B 1064 GLN B 1070 1 7 HELIX 13 13 GLY B 1074 GLY B 1078 5 5 HELIX 14 14 ARG B 1143 GLU B 1145 5 3 SHEET 1 AA 5 ILE A 954 ASP A 957 0 SHEET 2 AA 5 TYR A 992 CYS A1001 -1 O LYS A 999 N ILE A 956 SHEET 3 AA 5 ALA A1147 ILE A1157 -1 O GLU A1150 N VAL A1000 SHEET 4 AA 5 ARG A1094 THR A1102 -1 O ARG A1094 N TYR A1155 SHEET 5 AA 5 GLU A1026 HIS A1031 -1 O ARG A1027 N VAL A1101 SHEET 1 AB 4 ILE A1059 ALA A1062 0 SHEET 2 AB 4 GLU A1138 ILE A1141 -1 O TYR A1139 N PHE A1061 SHEET 3 AB 4 SER A1124 PRO A1129 -1 O VAL A1125 N VAL A1140 SHEET 4 AB 4 SER A1106 SER A1111 1 O PHE A1107 N THR A1126 SHEET 1 BA 5 ILE B 954 ASP B 957 0 SHEET 2 BA 5 TYR B 992 CYS B1001 -1 O LYS B 999 N ILE B 956 SHEET 3 BA 5 ALA B1147 ILE B1157 -1 O GLU B1150 N VAL B1000 SHEET 4 BA 5 ARG B1094 THR B1102 -1 O ARG B1094 N TYR B1155 SHEET 5 BA 5 GLU B1026 HIS B1031 -1 O ARG B1027 N VAL B1101 SHEET 1 BB 4 ILE B1059 ALA B1062 0 SHEET 2 BB 4 GLU B1138 ILE B1141 -1 O TYR B1139 N PHE B1061 SHEET 3 BB 4 SER B1124 PRO B1129 -1 O VAL B1125 N VAL B1140 SHEET 4 BB 4 SER B1106 SER B1111 1 O PHE B1107 N THR B1126 LINK ZN ZN A2163 SG CYS A1081 1555 1555 2.20 LINK ZN ZN A2163 SG CYS A1089 1555 1555 2.39 LINK ZN ZN A2163 ND1 HIS A1084 1555 1555 2.19 LINK ZN ZN A2163 SG CYS A1092 1555 1555 2.33 LINK ZN ZN B2163 ND1 HIS B1084 1555 1555 2.09 LINK ZN ZN B2163 SG CYS B1089 1555 1555 2.24 LINK ZN ZN B2163 SG CYS B1092 1555 1555 2.32 LINK ZN ZN B2163 SG CYS B1081 1555 1555 2.31 SITE 1 AC1 9 HIS A1031 GLY A1032 TYR A1050 TYR A1060 SITE 2 AC1 9 LYS A1067 SER A1068 TYR A1071 ILE A1075 SITE 3 AC1 9 GLU A1138 SITE 1 AC2 4 CYS A1081 HIS A1084 CYS A1089 CYS A1092 SITE 1 AC3 5 PRO A1129 SER A1130 VAL A1131 ASN A1132 SITE 2 AC3 5 GLY A1133 SITE 1 AC4 6 ARG A 977 HIS A 979 ARG A 980 LYS A1067 SITE 2 AC4 6 GLN A1070 HOH A2024 SITE 1 AC5 5 ASN A 990 ARG A 991 PRO A1160 GLU A1161 SITE 2 AC5 5 HOH A2037 SITE 1 AC6 2 LYS A 999 ASN A1002 SITE 1 AC7 8 HIS B1031 GLY B1032 TYR B1050 TYR B1060 SITE 2 AC7 8 LYS B1067 SER B1068 TYR B1071 GLU B1138 SITE 1 AC8 4 CYS B1081 HIS B1084 CYS B1089 CYS B1092 SITE 1 AC9 7 GLU B 978 HIS B 979 ILE B 988 PHE B 989 SITE 2 AC9 7 HOH B2014 HOH B2024 HOH B2025 SITE 1 BC1 5 ARG B 977 HIS B 979 ARG B 980 LYS B1067 SITE 2 BC1 5 GLN B1070 SITE 1 BC2 5 ASN B 990 ARG B 991 PRO B1160 GLU B1161 SITE 2 BC2 5 HOH B2026 SITE 1 BC3 3 LYS B 999 ASN B1002 GLU B1150 CRYST1 91.570 97.990 117.950 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008478 0.00000