PDB Short entry for 4AVX HEADER SIGNALING PROTEIN 30-MAY-12 4AVX TITLE HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE (HGS-HRS) TITLE 2 BOUND TO AN IP2 COMPOUND AT 1.68 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE COMPND 3 SUBSTRATE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: VHS AND FYVE DOMAINS, RESIDUES 691-915; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SIGNALING PROTEIN, STRUCTURAL GENOMICS CONSORTIUM, SGC, SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR E.WILLIAMS,P.CANNING,L.SHRESTHA,T.KROJER,M.VOLLMAR,A.SLOWEY,S.CONWAY, AUTHOR 2 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,A.BULLOCK REVDAT 3 20-DEC-23 4AVX 1 REMARK LINK REVDAT 2 24-JAN-18 4AVX 1 AUTHOR JRNL REVDAT 1 13-JUN-12 4AVX 0 JRNL AUTH E.WILLIAMS,P.CANNING,L.SHRESTHA,T.KROJER,M.VOLLMAR,A.SLOWEY, JRNL AUTH 2 S.CONWAY,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT, JRNL AUTH 3 C.BOUNTRA,A.BULLOCK JRNL TITL CRYSTAL STRUCTURE OF THE TANDEM VHS AND FYVE DOMAINS OF JRNL TITL 2 HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE JRNL TITL 3 (HGS-HRS) BOUND TO AN IP2 COMPOUND AT 1.68 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 21700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1167 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1520 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1743 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1858 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1294 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2500 ; 1.703 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3160 ; 1.005 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 5.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;35.835 ;24.773 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;13.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.792 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2026 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 361 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5160 23.3510 8.9623 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0222 REMARK 3 T33: 0.0169 T12: -0.0097 REMARK 3 T13: -0.0015 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.1812 L22: 0.2975 REMARK 3 L33: 0.2539 L12: 0.1431 REMARK 3 L13: 0.1841 L23: 0.2353 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: -0.0112 S13: -0.0189 REMARK 3 S21: -0.0724 S22: 0.0399 S23: 0.0041 REMARK 3 S31: -0.0743 S32: 0.0080 S33: 0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 4AVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 43.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZYQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5; 25% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.77250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 GLU A 224 REMARK 465 GLY A 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 26 CD OE1 OE2 REMARK 470 LYS A 56 NZ REMARK 470 HIS A 59 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 164 CD OE1 OE2 REMARK 470 LYS A 192 CE NZ REMARK 470 ARG A 221 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 130 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 130 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 121 19.80 53.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1226 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 166 SG REMARK 620 2 CYS A 169 SG 108.7 REMARK 620 3 CYS A 190 SG 112.7 112.1 REMARK 620 4 CYS A 193 SG 107.3 111.1 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1225 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 182 SG REMARK 620 2 CYS A 185 SG 102.5 REMARK 620 3 CYS A 212 SG 114.7 119.3 REMARK 620 4 CYS A 215 SG 110.7 112.9 96.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ITP A 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1234 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D3G RELATED DB: PDB REMARK 900 DOUBLE SIDED UBIQUITIN BINDING OF HRS-UIM REMARK 900 RELATED ID: 3ZYQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM VHS AND FYVE DOMAINS OF HEPATOCYTE REMARK 900 GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE (HGS-HRS) AT 1.48 REMARK 900 A RESOLUTION DBREF 4AVX A 1 225 UNP O14964 HGS_HUMAN 691 915 SEQADV 4AVX SER A 0 UNP O14964 EXPRESSION TAG SEQRES 1 A 226 SER MET GLY ARG GLY SER GLY THR PHE GLU ARG LEU LEU SEQRES 2 A 226 ASP LYS ALA THR SER GLN LEU LEU LEU GLU THR ASP TRP SEQRES 3 A 226 GLU SER ILE LEU GLN ILE CYS ASP LEU ILE ARG GLN GLY SEQRES 4 A 226 ASP THR GLN ALA LYS TYR ALA VAL ASN SER ILE LYS LYS SEQRES 5 A 226 LYS VAL ASN ASP LYS ASN PRO HIS VAL ALA LEU TYR ALA SEQRES 6 A 226 LEU GLU VAL MET GLU SER VAL VAL LYS ASN CYS GLY GLN SEQRES 7 A 226 THR VAL HIS ASP GLU VAL ALA ASN LYS GLN THR MET GLU SEQRES 8 A 226 GLU LEU LYS ASP LEU LEU LYS ARG GLN VAL GLU VAL ASN SEQRES 9 A 226 VAL ARG ASN LYS ILE LEU TYR LEU ILE GLN ALA TRP ALA SEQRES 10 A 226 HIS ALA PHE ARG ASN GLU PRO LYS TYR LYS VAL VAL GLN SEQRES 11 A 226 ASP THR TYR GLN ILE MET LYS VAL GLU GLY HIS VAL PHE SEQRES 12 A 226 PRO GLU PHE LYS GLU SER ASP ALA MET PHE ALA ALA GLU SEQRES 13 A 226 ARG ALA PRO ASP TRP VAL ASP ALA GLU GLU CYS HIS ARG SEQRES 14 A 226 CYS ARG VAL GLN PHE GLY VAL MET THR ARG LYS HIS HIS SEQRES 15 A 226 CYS ARG ALA CYS GLY GLN ILE PHE CYS GLY LYS CYS SER SEQRES 16 A 226 SER LYS TYR SER THR ILE PRO LYS PHE GLY ILE GLU LYS SEQRES 17 A 226 GLU VAL ARG VAL CYS GLU PRO CYS TYR GLU GLN LEU ASN SEQRES 18 A 226 ARG LYS ALA GLU GLY HET EDO A1224 4 HET ZN A1225 1 HET ZN A1226 1 HET ITP A1227 20 HET EDO A1228 4 HET EDO A1229 4 HET EDO A1230 4 HET EDO A1231 4 HET EDO A1232 4 HET EDO A1233 4 HET EDO A1234 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM ITP PHOSPHORIC ACID MONO-(2,3,4,6-TETRAHYDROXY-5- HETNAM 2 ITP PHOSPHONOOXY-CYCLOHEXYL) ESTER HETSYN EDO ETHYLENE GLYCOL HETSYN ITP INOSITOL 1,3-BISPHOSPHATE FORMUL 2 EDO 8(C2 H6 O2) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 ITP C6 H14 O12 P2 FORMUL 13 HOH *148(H2 O) HELIX 1 1 GLY A 6 THR A 16 1 11 HELIX 2 2 ASP A 24 GLN A 37 1 14 HELIX 3 3 GLN A 41 ASN A 54 1 14 HELIX 4 4 ASN A 57 CYS A 75 1 19 HELIX 5 5 GLY A 76 ALA A 84 1 9 HELIX 6 6 ASN A 85 GLN A 99 1 15 HELIX 7 7 GLU A 101 PHE A 119 1 19 HELIX 8 8 GLU A 122 LYS A 124 5 3 HELIX 9 9 TYR A 125 GLU A 138 1 14 HELIX 10 10 LYS A 146 MET A 151 5 6 HELIX 11 11 CYS A 190 SER A 194 5 5 HELIX 12 12 PRO A 201 GLY A 204 5 4 HELIX 13 13 CYS A 212 LYS A 222 1 11 SHEET 1 AA 2 HIS A 180 HIS A 181 0 SHEET 2 AA 2 ILE A 188 PHE A 189 -1 O PHE A 189 N HIS A 180 SHEET 1 AB 2 LYS A 196 ILE A 200 0 SHEET 2 AB 2 ILE A 205 VAL A 211 -1 O ILE A 205 N ILE A 200 LINK SG CYS A 166 ZN ZN A1226 1555 1555 2.40 LINK SG CYS A 169 ZN ZN A1226 1555 1555 2.30 LINK SG CYS A 182 ZN ZN A1225 1555 1555 2.32 LINK SG CYS A 185 ZN ZN A1225 1555 1555 2.36 LINK SG CYS A 190 ZN ZN A1226 1555 1555 2.42 LINK SG CYS A 193 ZN ZN A1226 1555 1555 2.27 LINK SG CYS A 212 ZN ZN A1225 1555 1555 2.37 LINK SG CYS A 215 ZN ZN A1225 1555 1555 2.29 SITE 1 AC1 4 ASP A 162 ALA A 163 GLU A 164 LYS A 179 SITE 1 AC2 4 CYS A 182 CYS A 185 CYS A 212 CYS A 215 SITE 1 AC3 4 CYS A 166 CYS A 169 CYS A 190 CYS A 193 SITE 1 AC4 16 TRP A 160 ARG A 178 LYS A 179 HIS A 180 SITE 2 AC4 16 HIS A 181 ARG A 183 ARG A 210 EDO A1233 SITE 3 AC4 16 HOH A2127 HOH A2128 HOH A2129 HOH A2133 SITE 4 AC4 16 HOH A2144 HOH A2145 HOH A2147 HOH A2148 SITE 1 AC5 4 VAL A 102 ARG A 105 ASN A 106 EDO A1232 SITE 1 AC6 2 PRO A 214 CYS A 215 SITE 1 AC7 4 LYS A 50 ASN A 54 GLU A 91 HOH A2044 SITE 1 AC8 1 GLN A 18 SITE 1 AC9 6 ARG A 105 LEU A 109 GLY A 139 HIS A 140 SITE 2 AC9 6 VAL A 141 EDO A1228 SITE 1 BC1 6 ASP A 162 LYS A 179 HIS A 181 ILE A 188 SITE 2 BC1 6 GLU A 217 ITP A1227 SITE 1 BC2 2 GLN A 41 TYR A 44 CRYST1 27.825 67.545 57.423 90.00 103.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035939 0.000000 0.008635 0.00000 SCALE2 0.000000 0.014805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017910 0.00000