PDB Short entry for 4AXK HEADER ISOMERASE 13-JUN-12 4AXK TITLE CRYSTAL STRUCTURE OF SUBHISA FROM THE THERMOPHILE CORYNEBACTERIUM TITLE 2 EFFICIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-(5-PHOSPHORIBOSYL)-5-((5'-PHOSPHORIBOSYLAMINO) COMPND 3 METHYLIDENEAMINO)IMIDAZOLE-4-CARBOXAMIDE ISOMERASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: PHOSPHORIBOSYL ISOMERASE\, SUBHISA; COMPND 6 EC: 5.3.1.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM EFFICIENS; SOURCE 3 ORGANISM_TAXID: 152794; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22-CEFF KEYWDS ISOMERASE, (BETA-ALPHA)8-BARREL, METABOLISM, EVOLUTION OF SUBSTRATE KEYWDS 2 SPECIFICITY, HISTIDINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR L.NODA-GARCIA,A.R.CAMACHO-ZARCO,S.MEDINA-RUIZ,E.A.VERDUZCO-CASTRO, AUTHOR 2 P.GAYTAN,M.CARRILLO-TRIPP,V.FULOP,F.BARONA-GOMEZ REVDAT 3 20-DEC-23 4AXK 1 REMARK SHEET REVDAT 2 05-FEB-14 4AXK 1 JRNL REVDAT 1 26-JUN-13 4AXK 0 JRNL AUTH L.NODA-GARCIA,A.R.CAMACHO-ZARCO,S.MEDINA-RUIZ,P.GAYTAN, JRNL AUTH 2 M.CARRILLO-TRIPP,V.FULOP,F.BARONA-GOMEZ JRNL TITL EVOLUTION OF SUBSTRATE SPECIFICITY IN A RECIPIENT'S ENZYME JRNL TITL 2 FOLLOWING HORIZONTAL GENE TRANSFER. JRNL REF MOL.BIOL.EVOL. V. 30 2024 2013 JRNL REFN ISSN 0737-4038 JRNL PMID 23800623 JRNL DOI 10.1093/MOLBEV/MST115 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : -2.15000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.351 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3685 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4996 ; 1.606 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 7.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;38.760 ;24.535 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 621 ;18.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;21.967 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2772 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2334 ; 0.891 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3726 ; 1.634 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1351 ; 2.204 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1270 ; 3.652 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. RESIDUES A1, A22-28, REMARK 3 A143-146, B1, B140-149 ARE DISORDERED AND NOT MODELED, RESIDUES REMARK 3 A247, B247-250 ARE PART OF THE C-TERMINAL HIS-TAG LINKER AND REMARK 3 VISIBLE AND MODELED REMARK 4 REMARK 4 4AXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VEP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 7.5, 25% V/W PEG REMARK 280 -3350, 0.2 M MGCL2,30% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.73000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.21500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.21500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.73000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 22 REMARK 465 GLU A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 THR A 26 REMARK 465 GLU A 27 REMARK 465 LYS A 28 REMARK 465 GLY A 143 REMARK 465 TRP A 144 REMARK 465 VAL A 145 REMARK 465 SER A 146 REMARK 465 ALA A 249 REMARK 465 ALA A 250 REMARK 465 MET B 1 REMARK 465 LYS B 140 REMARK 465 GLY B 141 REMARK 465 ASN B 142 REMARK 465 GLY B 143 REMARK 465 TRP B 144 REMARK 465 VAL B 145 REMARK 465 SER B 146 REMARK 465 ASP B 147 REMARK 465 GLY B 148 REMARK 465 GLY B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 248 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 130 O ASP B 170 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 59 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 59 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 3 -62.99 -19.81 REMARK 500 ASP A 20 -131.36 -70.07 REMARK 500 ASP A 74 64.99 -104.17 REMARK 500 ARG A 84 -10.74 -145.58 REMARK 500 LYS A 140 75.53 -67.23 REMARK 500 SER A 172 -38.56 -169.48 REMARK 500 ASP A 174 -18.83 -48.50 REMARK 500 THR A 176 85.95 52.15 REMARK 500 LEU A 177 7.66 161.70 REMARK 500 PHE B 3 -56.13 -25.24 REMARK 500 ASN B 134 31.83 38.01 REMARK 500 ARG B 165 137.82 -175.56 REMARK 500 ASP B 170 -94.33 -68.09 REMARK 500 VAL B 171 -4.71 96.96 REMARK 500 SER B 172 27.02 -75.92 REMARK 500 LYS B 173 111.37 65.58 REMARK 500 ASP B 174 21.69 45.96 REMARK 500 ALA B 249 -93.86 -153.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 2 PHE A 3 142.46 REMARK 500 THR B 2 PHE B 3 147.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1251 DBREF 4AXK A 1 246 UNP C8NPV3 C8NPV3_COREF 1 246 DBREF 4AXK B 1 246 UNP C8NPV3 C8NPV3_COREF 1 246 SEQADV 4AXK LYS A 247 UNP C8NPV3 EXPRESSION TAG SEQADV 4AXK LEU A 248 UNP C8NPV3 EXPRESSION TAG SEQADV 4AXK ALA A 249 UNP C8NPV3 EXPRESSION TAG SEQADV 4AXK ALA A 250 UNP C8NPV3 EXPRESSION TAG SEQADV 4AXK LYS B 247 UNP C8NPV3 EXPRESSION TAG SEQADV 4AXK LEU B 248 UNP C8NPV3 EXPRESSION TAG SEQADV 4AXK ALA B 249 UNP C8NPV3 EXPRESSION TAG SEQADV 4AXK ALA B 250 UNP C8NPV3 EXPRESSION TAG SEQRES 1 A 250 MET THR PHE THR ILE LEU PRO ALA VAL ASP VAL VAL ASN SEQRES 2 A 250 GLY GLN ALA VAL ARG LEU ASP GLN GLY GLU ALA GLY THR SEQRES 3 A 250 GLU LYS SER TYR GLY THR PRO LEU GLU SER ALA LEU ARG SEQRES 4 A 250 TRP GLN GLU GLN GLY ALA GLU TRP LEU HIS PHE VAL ASP SEQRES 5 A 250 LEU ASP ALA ALA PHE ASN ARG GLY SER ASN HIS GLU LEU SEQRES 6 A 250 MET ALA GLU ILE THR ARG GLN LEU ASP ILE LYS VAL GLU SEQRES 7 A 250 LEU THR GLY GLY ILE ARG ASP ASP ALA SER LEU GLU ARG SEQRES 8 A 250 ALA LEU ALA THR GLY ALA THR ARG VAL ASN ILE GLY THR SEQRES 9 A 250 ALA ALA LEU GLU LYS PRO GLU TRP ILE ALA ASP VAL ILE SEQRES 10 A 250 ARG ARG HIS GLY GLU LYS ILE ALA VAL ASP ILE ALA VAL SEQRES 11 A 250 ARG LEU GLU ASN GLY GLU TRP ARG THR LYS GLY ASN GLY SEQRES 12 A 250 TRP VAL SER ASP GLY GLY ASP LEU TRP GLU VAL LEU GLU SEQRES 13 A 250 ARG LEU ASP SER GLN GLY CYS SER ARG PHE VAL VAL THR SEQRES 14 A 250 ASP VAL SER LYS ASP GLY THR LEU THR GLY PRO ASN VAL SEQRES 15 A 250 ASP LEU LEU ARG ASP VAL ALA ALA ALA THR ASP ALA PRO SEQRES 16 A 250 ILE VAL ALA SER GLY GLY ILE SER THR LEU GLU ASP VAL SEQRES 17 A 250 LEU GLY LEU ALA LYS TYR GLN ASP GLU GLY ILE ASP SER SEQRES 18 A 250 VAL ILE ILE GLY LYS ALA LEU TYR GLU HIS ARG PHE THR SEQRES 19 A 250 LEU ALA GLU ALA LEU GLU ALA VAL GLU LYS LEU GLY LYS SEQRES 20 A 250 LEU ALA ALA SEQRES 1 B 250 MET THR PHE THR ILE LEU PRO ALA VAL ASP VAL VAL ASN SEQRES 2 B 250 GLY GLN ALA VAL ARG LEU ASP GLN GLY GLU ALA GLY THR SEQRES 3 B 250 GLU LYS SER TYR GLY THR PRO LEU GLU SER ALA LEU ARG SEQRES 4 B 250 TRP GLN GLU GLN GLY ALA GLU TRP LEU HIS PHE VAL ASP SEQRES 5 B 250 LEU ASP ALA ALA PHE ASN ARG GLY SER ASN HIS GLU LEU SEQRES 6 B 250 MET ALA GLU ILE THR ARG GLN LEU ASP ILE LYS VAL GLU SEQRES 7 B 250 LEU THR GLY GLY ILE ARG ASP ASP ALA SER LEU GLU ARG SEQRES 8 B 250 ALA LEU ALA THR GLY ALA THR ARG VAL ASN ILE GLY THR SEQRES 9 B 250 ALA ALA LEU GLU LYS PRO GLU TRP ILE ALA ASP VAL ILE SEQRES 10 B 250 ARG ARG HIS GLY GLU LYS ILE ALA VAL ASP ILE ALA VAL SEQRES 11 B 250 ARG LEU GLU ASN GLY GLU TRP ARG THR LYS GLY ASN GLY SEQRES 12 B 250 TRP VAL SER ASP GLY GLY ASP LEU TRP GLU VAL LEU GLU SEQRES 13 B 250 ARG LEU ASP SER GLN GLY CYS SER ARG PHE VAL VAL THR SEQRES 14 B 250 ASP VAL SER LYS ASP GLY THR LEU THR GLY PRO ASN VAL SEQRES 15 B 250 ASP LEU LEU ARG ASP VAL ALA ALA ALA THR ASP ALA PRO SEQRES 16 B 250 ILE VAL ALA SER GLY GLY ILE SER THR LEU GLU ASP VAL SEQRES 17 B 250 LEU GLY LEU ALA LYS TYR GLN ASP GLU GLY ILE ASP SER SEQRES 18 B 250 VAL ILE ILE GLY LYS ALA LEU TYR GLU HIS ARG PHE THR SEQRES 19 B 250 LEU ALA GLU ALA LEU GLU ALA VAL GLU LYS LEU GLY LYS SEQRES 20 B 250 LEU ALA ALA HET GOL A1249 6 HET GOL B1251 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *83(H2 O) HELIX 1 1 THR A 32 GLN A 43 1 12 HELIX 2 2 LEU A 53 PHE A 57 1 5 HELIX 3 3 ASN A 62 LEU A 73 1 12 HELIX 4 4 ASP A 85 ALA A 94 1 10 HELIX 5 5 THR A 104 LYS A 109 1 6 HELIX 6 6 LYS A 109 GLY A 121 1 13 HELIX 7 7 ASP A 150 GLN A 161 1 12 HELIX 8 8 SER A 172 THR A 176 5 5 HELIX 9 9 ASN A 181 THR A 192 1 12 HELIX 10 10 THR A 204 LYS A 213 1 10 HELIX 11 11 TYR A 214 GLU A 217 5 4 HELIX 12 12 GLY A 225 GLU A 230 1 6 HELIX 13 13 THR A 234 LYS A 247 1 14 HELIX 14 14 THR B 32 GLN B 43 1 12 HELIX 15 15 LEU B 53 PHE B 57 1 5 HELIX 16 16 ASN B 62 LEU B 73 1 12 HELIX 17 17 ASP B 85 ALA B 94 1 10 HELIX 18 18 GLY B 103 LYS B 109 1 7 HELIX 19 19 LYS B 109 GLY B 121 1 13 HELIX 20 20 ASP B 150 GLN B 161 1 12 HELIX 21 21 ASN B 181 THR B 192 1 12 HELIX 22 22 THR B 204 LYS B 213 1 10 HELIX 23 23 TYR B 214 GLU B 217 5 4 HELIX 24 24 GLY B 225 GLU B 230 1 6 HELIX 25 25 THR B 234 LEU B 248 1 15 SHEET 1 AA 9 THR A 4 VAL A 11 0 SHEET 2 AA 9 ILE A 219 ILE A 224 1 O ASP A 220 N THR A 4 SHEET 3 AA 9 ILE A 196 SER A 199 1 O ILE A 196 N ASP A 220 SHEET 4 AA 9 PHE A 166 ASP A 170 1 O PHE A 166 N VAL A 197 SHEET 5 AA 9 ILE A 124 GLU A 133 1 O VAL A 126 N VAL A 167 SHEET 6 AA 9 ARG A 99 ILE A 102 1 O VAL A 100 N ALA A 125 SHEET 7 AA 9 LYS A 76 THR A 80 1 O VAL A 77 N ARG A 99 SHEET 8 AA 9 TRP A 47 ASP A 52 1 O LEU A 48 N GLU A 78 SHEET 9 AA 9 THR A 4 VAL A 11 0 SHEET 1 AB 2 ALA A 16 VAL A 17 0 SHEET 2 AB 2 TYR A 30 GLY A 31 -1 O GLY A 31 N ALA A 16 SHEET 1 BA 9 THR B 4 VAL B 11 0 SHEET 2 BA 9 ILE B 219 ILE B 224 1 O ASP B 220 N THR B 4 SHEET 3 BA 9 ILE B 196 SER B 199 1 O ILE B 196 N SER B 221 SHEET 4 BA 9 PHE B 166 THR B 169 1 O PHE B 166 N VAL B 197 SHEET 5 BA 9 ILE B 124 ALA B 129 1 O VAL B 126 N VAL B 167 SHEET 6 BA 9 ARG B 99 ILE B 102 1 O VAL B 100 N ALA B 125 SHEET 7 BA 9 LYS B 76 THR B 80 1 O VAL B 77 N ARG B 99 SHEET 8 BA 9 TRP B 47 ASP B 52 1 O LEU B 48 N GLU B 78 SHEET 9 BA 9 THR B 4 VAL B 11 1 O PRO B 7 N HIS B 49 SHEET 1 BB 2 ALA B 16 VAL B 17 0 SHEET 2 BB 2 TYR B 30 GLY B 31 -1 O GLY B 31 N ALA B 16 SHEET 1 BC 2 ARG B 131 GLU B 133 0 SHEET 2 BC 2 GLU B 136 ARG B 138 -1 O GLU B 136 N GLU B 133 SITE 1 AC1 6 ASP A 52 ALA A 55 SER A 61 HIS A 63 SITE 2 AC1 6 GLY A 81 ARG A 91 SITE 1 AC2 7 ASP B 52 ALA B 55 SER B 61 HIS B 63 SITE 2 AC2 7 GLY B 81 GLY B 82 ARG B 91 CRYST1 69.460 78.840 92.430 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014397 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010819 0.00000