PDB Short entry for 4B0Y HEADER APOPTOSIS 06-JUL-12 4B0Y TITLE DETERMINATION OF X-RAY STRUCTURE OF HUMAN SOUL BY MOLECULAR TITLE 2 REPLACEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEME-BINDING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLACENTAL PROTEIN 23, PP23, PROTEIN SOUL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR F.FREIRE,A.L.CARVALHO,S.S.AVEIRO,P.CHARBONNIER,J.M.MOULIS,M.J.ROMAO, AUTHOR 2 B.J.GOODFELLOW,A.L.MACEDO REVDAT 2 20-DEC-23 4B0Y 1 REMARK REVDAT 1 01-AUG-12 4B0Y 0 JRNL AUTH F.FREIRE,A.L.CARVALHO,S.S.AVEIRO,P.CHARBONNIER,J.M.MOULIS, JRNL AUTH 2 M.J.ROMAO,B.J.GOODFELLOW,A.L.MACEDO JRNL TITL HUMAN SOUL: A HEME-BINDING OR A BH3 DOMAIN-CONTAINING JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 4541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.44000 REMARK 3 B22 (A**2) : -1.44000 REMARK 3 B33 (A**2) : 2.16000 REMARK 3 B12 (A**2) : -0.72000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.273 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.586 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.435 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 61.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.868 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.809 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1295 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1770 ; 0.846 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 4.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;36.920 ;24.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 178 ;15.600 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.864 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 199 ; 0.051 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1002 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9372 -62.2818 -2.5441 REMARK 3 T TENSOR REMARK 3 T11: 0.4622 T22: 0.2273 REMARK 3 T33: 0.3228 T12: 0.0176 REMARK 3 T13: -0.0905 T23: -0.1139 REMARK 3 L TENSOR REMARK 3 L11: 7.8872 L22: -0.3190 REMARK 3 L33: 12.4884 L12: 0.2766 REMARK 3 L13: -3.3726 L23: -3.6399 REMARK 3 S TENSOR REMARK 3 S11: -0.4308 S12: 0.7688 S13: -0.9621 REMARK 3 S21: 0.2784 S22: -0.2876 S23: -0.3596 REMARK 3 S31: -0.5979 S32: 0.3978 S33: 0.7184 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9902 -56.0322 -0.2511 REMARK 3 T TENSOR REMARK 3 T11: 0.2508 T22: 0.0779 REMARK 3 T33: 0.1723 T12: 0.0678 REMARK 3 T13: -0.2004 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 37.0419 L22: 0.9555 REMARK 3 L33: 11.7728 L12: 4.1057 REMARK 3 L13: -9.9612 L23: -2.9198 REMARK 3 S TENSOR REMARK 3 S11: -0.3587 S12: 1.4131 S13: 0.7274 REMARK 3 S21: -0.2929 S22: 0.0090 S23: 0.1752 REMARK 3 S31: -0.0192 S32: 0.0437 S33: 0.3497 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5052 -62.7104 19.5824 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: 0.2402 REMARK 3 T33: 0.0669 T12: -0.0124 REMARK 3 T13: 0.0303 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 6.0441 L22: 4.7899 REMARK 3 L33: 3.1364 L12: 2.6827 REMARK 3 L13: 1.6672 L23: -0.3431 REMARK 3 S TENSOR REMARK 3 S11: 0.5449 S12: -0.6994 S13: 0.3728 REMARK 3 S21: 0.5444 S22: -0.4218 S23: 0.4420 REMARK 3 S31: 0.5736 S32: -0.3904 S33: -0.1231 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8741 -71.2937 14.7986 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.5460 REMARK 3 T33: 0.3898 T12: 0.0672 REMARK 3 T13: -0.0777 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 10.8945 L22: 13.0336 REMARK 3 L33: -4.2216 L12: 21.2071 REMARK 3 L13: -10.9343 L23: -4.1199 REMARK 3 S TENSOR REMARK 3 S11: 0.1803 S12: 0.3977 S13: 0.9155 REMARK 3 S21: -0.0329 S22: 0.1833 S23: 0.5525 REMARK 3 S31: 0.1476 S32: -0.0341 S33: -0.3636 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9719 -59.9329 12.8032 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1595 REMARK 3 T33: 0.3475 T12: 0.0701 REMARK 3 T13: -0.0648 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.2574 L22: -2.6622 REMARK 3 L33: 6.4329 L12: -1.7017 REMARK 3 L13: 0.4832 L23: -4.8156 REMARK 3 S TENSOR REMARK 3 S11: -0.3044 S12: 0.1274 S13: -0.0694 REMARK 3 S21: -0.0544 S22: -0.1323 S23: 0.0611 REMARK 3 S31: 0.4674 S32: 0.4863 S33: 0.4367 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8298 -59.6146 13.2712 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.1889 REMARK 3 T33: 0.2803 T12: 0.0338 REMARK 3 T13: -0.0600 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 9.1082 L22: -0.1903 REMARK 3 L33: 7.3235 L12: -0.2277 REMARK 3 L13: 5.4939 L23: -1.0484 REMARK 3 S TENSOR REMARK 3 S11: 0.4469 S12: 0.3132 S13: -0.2637 REMARK 3 S21: 0.0478 S22: 0.2084 S23: -0.0910 REMARK 3 S31: -0.0856 S32: -0.3466 S33: -0.6553 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3008 -63.0397 13.0875 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.5274 REMARK 3 T33: 0.5015 T12: -0.0528 REMARK 3 T13: -0.0159 T23: 0.0840 REMARK 3 L TENSOR REMARK 3 L11: -2.3521 L22: 23.1077 REMARK 3 L33: -13.2008 L12: -1.6695 REMARK 3 L13: -4.9542 L23: -4.7807 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: -0.0370 S13: -0.1307 REMARK 3 S21: -0.1622 S22: -0.0699 S23: 0.8296 REMARK 3 S31: 0.3884 S32: 0.1050 S33: 0.1311 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4340 -57.6996 8.2032 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.0440 REMARK 3 T33: 0.1677 T12: 0.0244 REMARK 3 T13: -0.1763 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 7.1848 L22: 1.1952 REMARK 3 L33: 5.8499 L12: 1.2380 REMARK 3 L13: -2.3998 L23: -0.8841 REMARK 3 S TENSOR REMARK 3 S11: 0.2467 S12: -0.2750 S13: -0.0735 REMARK 3 S21: -0.3978 S22: -0.1124 S23: 0.4331 REMARK 3 S31: -0.1668 S32: 0.1684 S33: -0.1344 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8244 -52.3940 8.9289 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.4718 REMARK 3 T33: 0.2555 T12: 0.0476 REMARK 3 T13: 0.0075 T23: -0.0947 REMARK 3 L TENSOR REMARK 3 L11: 5.8603 L22: 20.2308 REMARK 3 L33: 12.0835 L12: 8.1973 REMARK 3 L13: -5.4295 L23: -15.8125 REMARK 3 S TENSOR REMARK 3 S11: 0.1282 S12: -0.0115 S13: -0.1922 REMARK 3 S21: 0.6111 S22: -0.2184 S23: -0.4544 REMARK 3 S31: -0.5993 S32: 0.4975 S33: 0.0902 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4383 -57.1407 7.8187 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.1125 REMARK 3 T33: 0.2773 T12: 0.0238 REMARK 3 T13: 0.0828 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 6.8060 L22: 0.4414 REMARK 3 L33: 6.3838 L12: 0.1606 REMARK 3 L13: 2.0262 L23: -1.4721 REMARK 3 S TENSOR REMARK 3 S11: -0.2053 S12: -0.1093 S13: -0.0084 REMARK 3 S21: -0.1626 S22: -0.0388 S23: -0.4615 REMARK 3 S31: 0.0823 S32: 0.1660 S33: 0.2441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4B0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5025 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 30.80 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 32.20 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AYZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULPHATE, 0.1 M MES 6.5, REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.06333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.12667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.06333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.12667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 20.06333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 40.12667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 20.06333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.12667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 SER A -20 REMARK 465 TYR A -19 REMARK 465 TYR A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 LEU A -11 REMARK 465 GLU A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 ASP A 30 REMARK 465 ALA A 31 REMARK 465 GLY A 32 REMARK 465 PRO A 33 REMARK 465 GLN A 34 REMARK 465 PRO A 35 REMARK 465 GLY A 98 REMARK 465 PRO A 99 REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 VAL A 183 REMARK 465 ASN A 198 REMARK 465 GLU A 199 REMARK 465 PRO A 200 REMARK 465 THR A 201 REMARK 465 LYS A 202 REMARK 465 GLU A 203 REMARK 465 ASN A 204 REMARK 465 GLU A 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 SER A 37 OG REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 SER A 125 OG REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 ASP A 143 CG OD1 OD2 REMARK 470 SER A 146 OG REMARK 470 SER A 147 OG REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 SER A 160 OG REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 VAL A 168 CG1 CG2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ASN A 180 CG OD1 ND2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LEU A 185 CG CD1 CD2 REMARK 470 ASN A 187 CG OD1 ND2 REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 28 -137.54 -76.56 REMARK 500 GLU A 80 13.91 54.33 REMARK 500 ASN A 187 47.17 -97.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AYZ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN SOUL DBREF 4B0Y A 1 205 UNP Q9Y5Z4 HEBP2_HUMAN 1 205 SEQADV 4B0Y MET A -21 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y SER A -20 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y TYR A -19 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y TYR A -18 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y HIS A -17 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y HIS A -16 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y HIS A -15 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y HIS A -14 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y HIS A -13 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y HIS A -12 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y LEU A -11 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y GLU A -10 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y SER A -9 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y THR A -8 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y SER A -7 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y LEU A -6 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y TYR A -5 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y LYS A -4 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y LYS A -3 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y ALA A -2 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y GLY A -1 UNP Q9Y5Z4 EXPRESSION TAG SEQADV 4B0Y THR A 0 UNP Q9Y5Z4 EXPRESSION TAG SEQRES 1 A 227 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 227 THR SER LEU TYR LYS LYS ALA GLY THR MET ALA GLU PRO SEQRES 3 A 227 LEU GLN PRO ASP PRO GLY ALA ALA GLU ASP ALA ALA ALA SEQRES 4 A 227 GLN ALA VAL GLU THR PRO GLY TRP LYS ALA PRO GLU ASP SEQRES 5 A 227 ALA GLY PRO GLN PRO GLY SER TYR GLU ILE ARG HIS TYR SEQRES 6 A 227 GLY PRO ALA LYS TRP VAL SER THR SER VAL GLU SER MET SEQRES 7 A 227 ASP TRP ASP SER ALA ILE GLN THR GLY PHE THR LYS LEU SEQRES 8 A 227 ASN SER TYR ILE GLN GLY LYS ASN GLU LYS GLU MET LYS SEQRES 9 A 227 ILE LYS MET THR ALA PRO VAL THR SER TYR VAL GLU PRO SEQRES 10 A 227 GLY SER GLY PRO PHE SER GLU SER THR ILE THR ILE SER SEQRES 11 A 227 LEU TYR ILE PRO SER GLU GLN GLN PHE ASP PRO PRO ARG SEQRES 12 A 227 PRO LEU GLU SER ASP VAL PHE ILE GLU ASP ARG ALA GLU SEQRES 13 A 227 MET THR VAL PHE VAL ARG SER PHE ASP GLY PHE SER SER SEQRES 14 A 227 ALA GLN LYS ASN GLN GLU GLN LEU LEU THR LEU ALA SER SEQRES 15 A 227 ILE LEU ARG GLU ASP GLY LYS VAL PHE ASP GLU LYS VAL SEQRES 16 A 227 TYR TYR THR ALA GLY TYR ASN SER PRO VAL LYS LEU LEU SEQRES 17 A 227 ASN ARG ASN ASN GLU VAL TRP LEU ILE GLN LYS ASN GLU SEQRES 18 A 227 PRO THR LYS GLU ASN GLU HELIX 1 1 TRP A 58 GLN A 74 1 17 HELIX 2 2 SER A 113 GLN A 116 5 4 HELIX 3 3 ALA A 148 ASP A 165 1 18 SHEET 1 AA 9 TRP A 25 LYS A 26 0 SHEET 2 AA 9 GLU A 39 TYR A 43 -1 O HIS A 42 N LYS A 26 SHEET 3 AA 9 MET A 135 PHE A 142 -1 O MET A 135 N TYR A 43 SHEET 4 AA 9 ASN A 190 ILE A 195 -1 O ASN A 190 N PHE A 142 SHEET 5 AA 9 TYR A 174 GLY A 178 -1 O TYR A 175 N TRP A 193 SHEET 6 AA 9 VAL A 89 GLU A 94 -1 O VAL A 89 N GLY A 178 SHEET 7 AA 9 SER A 103 TYR A 110 -1 O THR A 104 N GLU A 94 SHEET 8 AA 9 ALA A 46 SER A 55 -1 O VAL A 49 N LEU A 109 SHEET 9 AA 9 VAL A 127 ARG A 132 -1 O PHE A 128 N SER A 50 CISPEP 1 ALA A 87 PRO A 88 0 2.25 CRYST1 144.670 144.670 60.190 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006912 0.003991 0.000000 0.00000 SCALE2 0.000000 0.007982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016614 0.00000