PDB Short entry for 4B19 HEADER TOXIN 09-JUL-12 4B19 TITLE S. AUREUS PEPA1 NMR STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPA1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-31; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FULL TOXIN OF THE TYPE I T/A SYSTEM SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 4 ORGANISM_TAXID: 1280 KEYWDS TOXIN, TOXIN APOPTOTIC PEPTIDE, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR N.SAYED,S.NONIN-LECOMTE,S.RETY,B.FELDEN REVDAT 4 14-JUN-23 4B19 1 REMARK ATOM REVDAT 3 16-JAN-13 4B19 1 JRNL REVDAT 2 21-NOV-12 4B19 1 JRNL REVDAT 1 14-NOV-12 4B19 0 JRNL AUTH N.SAYED,S.NONIN-LECOMTE,S.RETY,B.FELDEN JRNL TITL FUNCTIONAL AND STRUCTURAL INSIGHTS OF A STAPHYLOCOCCUS JRNL TITL 2 AUREUS APOPTOTIC-LIKE MEMBRANE PEPTIDE FROM A JRNL TITL 3 TOXIN-ANTITOXIN MODULE JRNL REF J.BIOL.CHEM. V. 287 43454 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 23129767 JRNL DOI 10.1074/JBC.M112.402693 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN EXPLICIT DMSO CONFORMER REMARK 3 1=MINIMIZED AVERAGE OVER THE 20 BEST STRUCTURES REMARK 4 REMARK 4 4B19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053242. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288.0 REMARK 210 PH : 3.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : CDCL3 / CDOH (1/1.2) AND REMARK 210 RESIDUAL HOD REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN TOPSIN, CCPNMR ANALYSIS REMARK 210 METHOD USED : ARIA, GROMACS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 28 -63.02 -148.30 REMARK 500 2 LEU A 2 37.33 -140.25 REMARK 500 2 VAL A 5 -39.51 -174.50 REMARK 500 2 ILE A 8 -73.72 -95.36 REMARK 500 2 ASN A 28 -77.04 -141.75 REMARK 500 2 THR A 29 -42.70 174.10 REMARK 500 3 LEU A 2 -75.61 -145.30 REMARK 500 3 ILE A 7 -37.82 -164.59 REMARK 500 3 ARG A 26 47.20 -83.64 REMARK 500 3 ASN A 28 -85.60 -130.60 REMARK 500 4 LEU A 2 -169.92 -110.91 REMARK 500 4 VAL A 5 -43.44 176.28 REMARK 500 4 ALA A 9 -67.06 178.56 REMARK 500 4 ASN A 28 -80.82 -142.30 REMARK 500 5 ASN A 28 -62.51 -158.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18590 RELATED DB: BMRB DBREF 4B19 A 1 30 UNP D6T5T9 D6T5T9_STAAU 2 31 SEQRES 1 A 30 MET LEU ILE PHE VAL HIS ILE ILE ALA PRO VAL ILE SER SEQRES 2 A 30 GLY CYS ALA ILE ALA PHE PHE SER TYR TRP LEU SER ARG SEQRES 3 A 30 ARG ASN THR LYS HELIX 1 1 MET A 1 VAL A 5 5 5 HELIX 2 2 VAL A 11 ASN A 28 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000