PDB Short entry for 4B1G HEADER HYDROLASE 10-JUL-12 4B1G TITLE STRUCTURE OF UNLIGANDED HUMAN PARG CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 448-976; COMPND 5 EC: 3.2.1.143; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-6HIS KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.BRASSINGTON,J.ELLSTON,G.HASSALL,G.HOLDGATE,M.MCALISTER,R.OVERMAN, AUTHOR 2 G.SMITH,J.A.TUCKER,M.WATSON REVDAT 2 16-JAN-13 4B1G 1 JRNL REVDAT 1 19-DEC-12 4B1G 0 JRNL AUTH J.A.TUCKER,N.BENNETT,C.BRASSINGTON,S.T.DURANT,G.HASSALL, JRNL AUTH 2 G.HOLDGATE,M.MCALISTER,J.W.M.NISSINK,C.TRUMAN,M.WATSON JRNL TITL STRUCTURES OF THE HUMAN POLY (ADP-RIBOSE) GLYCOHYDROLASE JRNL TITL 2 CATALYTIC DOMAIN CONFIRM CATALYTIC MECHANISM AND EXPLAIN JRNL TITL 3 INHIBITION BY ADP-HPD DERIVATIVES. JRNL REF PLOS ONE V. 7 50889 2012 JRNL REFN ISSN 1932-6203 JRNL PMID 23251397 JRNL DOI 10.1371/JOURNAL.PONE.0050889 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 84.76 REMARK 3 NUMBER OF REFLECTIONS : 36906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18492 REMARK 3 R VALUE (WORKING SET) : 0.18313 REMARK 3 FREE R VALUE : 0.21794 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.833 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.881 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1124 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 34.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.297 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.348 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.243 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19 REMARK 3 B22 (A**2) : 0.62 REMARK 3 B33 (A**2) : -0.53 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.52 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.17 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.14 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.10 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.77 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4270 ; 0.015 ; 0.02 REMARK 3 BOND LENGTHS OTHERS (A): 2948 ; 0.002 ; 0.02 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5811 ; 1.444 ; 1.95 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7120 ; 1.699 ; 3.00 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 5.986 ; 5.00 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;36.596 ; 22.76 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 708 ;15.464 ; 15.00 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.328 ; 15.00 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.098 ; 0.20 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4830 ; 0.006 ; 0.02 REMARK 3 GENERAL PLANES OTHERS (A): 953 ; 0.001 ; 0.02 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2591 ; 0.826 ; 1.50 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1034 ; 0.211 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4187 ; 1.487 ; 2.00 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1679 ; 2.420 ; 3.00 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1624 ; 3.528 ; 4.50 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 451 A 962 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6776 -0.4343 24.6623 REMARK 3 T TENSOR REMARK 3 T11: 0.0034 T22: 0.0386 REMARK 3 T33: 0.0388 T12: 0.0025 REMARK 3 T13: -0.0002 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.2921 L22: 0.5463 REMARK 3 L33: 1.0685 L12: 0.0170 REMARK 3 L13: 0.0811 L23: 0.3951 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0011 S13: -0.0138 REMARK 3 S21: -0.0302 S22: -0.0637 S23: 0.0074 REMARK 3 S31: -0.0046 S32: -0.1191 S33: 0.0808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4B1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-12. REMARK 100 THE PDBE ID CODE IS EBI-53297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979, 0.975, 0.982 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.83 REMARK 200 RESOLUTION RANGE LOW (A) : 88.99 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 6.3 REMARK 200 R MERGE (I) : 0.11 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.2 REMARK 200 R MERGE FOR SHELL (I) : 0.38 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG3350, 0.2M MAGNESIUM REMARK 280 CHLORIDE, 0.1M PCTP (0.04M SODIUM PROPIONATE, 0.02M SODIUM REMARK 280 CACODYLATE, 0.04M BIS-TRIS PROPANE) PH 7.5; 1:1 RATIO; 4 REMARK 280 MICROLITRE DROP; ROOM TEMPERATURE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.19350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 616 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 617 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 618 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 688 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 689 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 690 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 SER A 448 REMARK 465 PRO A 449 REMARK 465 ASP A 450 REMARK 465 GLU A 524 REMARK 465 ASP A 525 REMARK 465 GLU A 526 REMARK 465 ASN A 527 REMARK 465 GLY A 528 REMARK 465 GLU A 529 REMARK 465 LYS A 648 REMARK 465 MSE A 649 REMARK 465 LYS A 650 REMARK 465 SER A 944 REMARK 465 THR A 945 REMARK 465 PRO A 946 REMARK 465 GLY A 947 REMARK 465 CYS A 963 REMARK 465 ALA A 964 REMARK 465 GLU A 965 REMARK 465 THR A 966 REMARK 465 ALA A 967 REMARK 465 ASP A 968 REMARK 465 HIS A 969 REMARK 465 SER A 970 REMARK 465 GLY A 971 REMARK 465 GLN A 972 REMARK 465 ARG A 973 REMARK 465 THR A 974 REMARK 465 GLY A 975 REMARK 465 THR A 976 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 LYS A 452 CD CE NZ REMARK 470 ILE A 469 CG1 CG2 CD1 REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 VAL A 523 CG1 CG2 REMARK 470 ARG A 530 CG CD NE CZ NH1 NH2 REMARK 470 THR A 531 OG1 CG2 REMARK 470 LYS A 567 CG CD CE NZ REMARK 470 GLU A 583 CG CD OE1 OE2 REMARK 470 SER A 651 OG REMARK 470 ARG A 710 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 830 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 831 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 834 CG OD1 OD2 REMARK 470 GLU A 860 CG CD OE1 OE2 REMARK 470 LYS A 922 CG CD CE NZ REMARK 470 LYS A 951 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 653 O HOH A 2056 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2B GLU A 585 O A HOH A 2055 1655 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 872 CB CYS A 872 SG 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 561 40.44 -144.93 REMARK 500 SER A 592 -52.73 -124.54 REMARK 500 CYS A 608 78.41 -103.30 REMARK 500 ALA A 618 -13.01 78.39 REMARK 500 SER A 749 -117.06 -137.25 REMARK 500 LEU A 752 46.67 -155.67 REMARK 500 VAL A 753 -152.65 -106.63 REMARK 500 ASN A 762 72.88 -119.12 REMARK 500 TYR A 795 136.08 -173.03 REMARK 500 ALA A 796 -116.31 49.58 REMARK 500 GLU A 961 70.52 -66.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 DTV: DTT FROM PROTEIN BUFFER DERIVATISES CYSTEINE TO FORM REMARK 600 (2R)-2-AZANIUMYL-3-[[(2S,3S)-2,3-DIHYDROXY-4-SULFANYL] REMARK 600 PROPANOATE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTV A1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1963 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A0D RELATED DB: PDB REMARK 900 STRUCTURE OF UNLIGANDED HUMAN PARG CATALYTIC DOMAIN REMARK 900 RELATED ID: 4B1H RELATED DB: PDB REMARK 900 STRUCTURE OF UNLIGANDED HUMAN PARG CATALYTIC DOMAIN REMARK 900 RELATED ID: 4B1I RELATED DB: PDB REMARK 900 STRUCTURE OF UNLIGANDED HUMAN PARG CATALYTIC DOMAIN REMARK 900 RELATED ID: 4B1J RELATED DB: PDB REMARK 900 STRUCTURE OF UNLIGANDED HUMAN PARG CATALYTIC DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 SIX SURFACE ENTROPY MUTATIONS INTRODUCED TO IMPROVE CRYSTALLISABILITY REMARK 999 K617A,Q618A,K619A,E688A,K689A,K690A DBREF 4B1G A 448 976 UNP Q86W56 PARG_HUMAN 448 976 SEQADV 4B1G GLY A 446 UNP Q86W56 EXPRESSION TAG SEQADV 4B1G SER A 447 UNP Q86W56 EXPRESSION TAG SEQADV 4B1G ALA A 616 UNP Q86W56 LYS 616 ENGINEERED MUTATION SEQADV 4B1G ALA A 617 UNP Q86W56 GLN 617 ENGINEERED MUTATION SEQADV 4B1G ALA A 618 UNP Q86W56 LYS 618 ENGINEERED MUTATION SEQADV 4B1G ALA A 688 UNP Q86W56 GLU 688 ENGINEERED MUTATION SEQADV 4B1G ALA A 689 UNP Q86W56 LYS 689 ENGINEERED MUTATION SEQADV 4B1G ALA A 690 UNP Q86W56 LYS 690 ENGINEERED MUTATION SEQRES 1 A 531 GLY SER SER PRO ASP LYS LYS TRP LEU GLY THR PRO ILE SEQRES 2 A 531 GLU GLU MSE ARG ARG MSE PRO ARG CYS GLY ILE ARG LEU SEQRES 3 A 531 PRO LEU LEU ARG PRO SER ALA ASN HIS THR VAL THR ILE SEQRES 4 A 531 ARG VAL ASP LEU LEU ARG ALA GLY GLU VAL PRO LYS PRO SEQRES 5 A 531 PHE PRO THR HIS TYR LYS ASP LEU TRP ASP ASN LYS HIS SEQRES 6 A 531 VAL LYS MSE PRO CYS SER GLU GLN ASN LEU TYR PRO VAL SEQRES 7 A 531 GLU ASP GLU ASN GLY GLU ARG THR ALA GLY SER ARG TRP SEQRES 8 A 531 GLU LEU ILE GLN THR ALA LEU LEU ASN LYS PHE THR ARG SEQRES 9 A 531 PRO GLN ASN LEU LYS ASP ALA ILE LEU LYS TYR ASN VAL SEQRES 10 A 531 ALA TYR SER LYS LYS TRP ASP PHE THR ALA LEU ILE ASP SEQRES 11 A 531 PHE TRP ASP LYS VAL LEU GLU GLU ALA GLU ALA GLN HIS SEQRES 12 A 531 LEU TYR GLN SER ILE LEU PRO ASP MSE VAL LYS ILE ALA SEQRES 13 A 531 LEU CYS LEU PRO ASN ILE CYS THR GLN PRO ILE PRO LEU SEQRES 14 A 531 LEU ALA ALA ALA MSE ASN HIS SER ILE THR MSE SER GLN SEQRES 15 A 531 GLU GLN ILE ALA SER LEU LEU ALA ASN ALA PHE PHE CYS SEQRES 16 A 531 THR PHE PRO ARG ARG ASN ALA LYS MSE LYS SER GLU TYR SEQRES 17 A 531 SER SER TYR PRO ASP ILE ASN PHE ASN ARG LEU PHE GLU SEQRES 18 A 531 GLY ARG SER SER ARG LYS PRO GLU LYS LEU LYS THR LEU SEQRES 19 A 531 PHE CYS TYR PHE ARG ARG VAL THR ALA ALA ALA PRO THR SEQRES 20 A 531 GLY LEU VAL THR PHE THR ARG GLN SER LEU GLU ASP PHE SEQRES 21 A 531 PRO GLU TRP GLU ARG CYS GLU LYS PRO LEU THR ARG LEU SEQRES 22 A 531 HIS VAL THR TYR GLU GLY THR ILE GLU GLU ASN GLY GLN SEQRES 23 A 531 GLY MSE LEU GLN VAL ASP PHE ALA ASN ARG PHE VAL GLY SEQRES 24 A 531 GLY GLY VAL THR SER ALA GLY LEU VAL GLN GLU GLU ILE SEQRES 25 A 531 ARG PHE LEU ILE ASN PRO GLU LEU ILE ILE SER ARG LEU SEQRES 26 A 531 PHE THR GLU VAL LEU ASP HIS ASN GLU CYS LEU ILE ILE SEQRES 27 A 531 THR GLY THR GLU GLN TYR SER GLU TYR THR GLY TYR ALA SEQRES 28 A 531 GLU THR TYR ARG TRP SER ARG SER HIS GLU ASP GLY SER SEQRES 29 A 531 GLU ARG ASP ASP TRP GLN ARG ARG CYS THR GLU ILE VAL SEQRES 30 A 531 ALA ILE ASP ALA LEU HIS PHE ARG ARG TYR LEU ASP GLN SEQRES 31 A 531 PHE VAL PRO GLU LYS MSE ARG ARG GLU LEU ASN LYS ALA SEQRES 32 A 531 TYR CYS GLY PHE LEU ARG PRO GLY VAL SER SER GLU ASN SEQRES 33 A 531 LEU SER ALA VAL ALA THR GLY ASN TRP GLY CYS GLY ALA SEQRES 34 A 531 PHE GLY GLY ASP ALA ARG LEU LYS ALA LEU ILE GLN ILE SEQRES 35 A 531 LEU ALA ALA ALA ALA ALA GLU ARG ASP VAL VAL TYR PHE SEQRES 36 A 531 THR PHE GLY ASP SER GLU LEU MSE ARG ASP ILE TYR SER SEQRES 37 A 531 MSE HIS ILE PHE LEU THR GLU ARG LYS LEU THR VAL GLY SEQRES 38 A 531 ASP VAL TYR LYS LEU LEU LEU ARG TYR TYR ASN GLU GLU SEQRES 39 A 531 CYS ARG ASN CYS SER THR PRO GLY PRO ASP ILE LYS LEU SEQRES 40 A 531 TYR PRO PHE ILE TYR HIS ALA VAL GLU SER CYS ALA GLU SEQRES 41 A 531 THR ALA ASP HIS SER GLY GLN ARG THR GLY THR MODRES 4B1G MSE A 461 MET SELENOMETHIONINE MODRES 4B1G MSE A 464 MET SELENOMETHIONINE MODRES 4B1G MSE A 513 MET SELENOMETHIONINE MODRES 4B1G MSE A 597 MET SELENOMETHIONINE MODRES 4B1G MSE A 619 MET SELENOMETHIONINE MODRES 4B1G MSE A 625 MET SELENOMETHIONINE MODRES 4B1G MSE A 733 MET SELENOMETHIONINE MODRES 4B1G MSE A 841 MET SELENOMETHIONINE MODRES 4B1G MSE A 908 MET SELENOMETHIONINE MODRES 4B1G MSE A 914 MET SELENOMETHIONINE HET MSE A 461 8 HET MSE A 464 8 HET MSE A 513 8 HET MSE A 597 8 HET MSE A 619 8 HET MSE A 625 8 HET MSE A 733 8 HET MSE A 841 8 HET MSE A 908 8 HET MSE A 914 8 HET DTV A1603 8 HET SO4 A1963 5 HETNAM MSE SELENOMETHIONINE HETNAM DTV (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETNAM SO4 SULFATE ION FORMUL 2 MSE 10(C5 H11 N O2 SE) FORMUL 3 DTV C4 H10 O2 S2 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *293(H2 O) HELIX 1 1 PRO A 457 MSE A 461 5 5 HELIX 2 2 ARG A 485 LEU A 489 5 5 HELIX 3 3 ARG A 535 LEU A 544 1 10 HELIX 4 4 ARG A 549 TYR A 560 1 12 HELIX 5 5 ASN A 561 SER A 565 5 5 HELIX 6 6 PHE A 570 VAL A 580 1 11 HELIX 7 7 GLU A 582 SER A 592 1 11 HELIX 8 8 SER A 592 CYS A 603 1 12 HELIX 9 9 CYS A 603 CYS A 608 1 6 HELIX 10 10 GLN A 627 PHE A 639 1 13 HELIX 11 11 PHE A 661 GLU A 666 5 6 HELIX 12 12 ARG A 671 ALA A 689 1 19 HELIX 13 13 GLU A 707 CYS A 711 5 5 HELIX 14 14 THR A 725 GLY A 730 1 6 HELIX 15 15 VAL A 753 ASN A 762 1 10 HELIX 16 16 PRO A 763 ILE A 766 5 4 HELIX 17 17 ILE A 767 THR A 772 1 6 HELIX 18 18 TYR A 795 TYR A 799 5 5 HELIX 19 19 ARG A 831 PHE A 836 5 6 HELIX 20 20 VAL A 837 LEU A 853 1 17 HELIX 21 21 SER A 858 LEU A 862 5 5 HELIX 22 22 CYS A 872 GLY A 876 5 5 HELIX 23 23 ASP A 878 ALA A 893 1 16 HELIX 24 24 ASP A 904 ARG A 921 1 18 HELIX 25 25 THR A 924 CYS A 940 1 17 HELIX 26 26 LYS A 951 GLU A 961 1 11 SHEET 1 AA10 TRP A 453 GLY A 455 0 SHEET 2 AA10 LEU A 718 THR A 721 -1 O VAL A 720 N LEU A 454 SHEET 3 AA10 VAL A 897 PHE A 900 1 O VAL A 897 N HIS A 719 SHEET 4 AA10 VAL A 865 GLY A 868 1 O VAL A 865 N VAL A 898 SHEET 5 AA10 LEU A 734 ALA A 739 1 O LEU A 734 N ALA A 866 SHEET 6 AA10 GLU A 820 ASP A 825 1 O GLU A 820 N GLN A 735 SHEET 7 AA10 GLU A 779 THR A 784 -1 O LEU A 781 N ALA A 823 SHEET 8 AA10 LEU A 694 SER A 701 -1 O THR A 696 N THR A 784 SHEET 9 AA10 HIS A 621 SER A 626 -1 O HIS A 621 N ARG A 699 SHEET 10 AA10 HIS A 480 VAL A 482 1 O THR A 481 N THR A 624 SHEET 1 AB 2 LEU A 520 PRO A 522 0 SHEET 2 AB 2 ALA A 532 SER A 534 -1 O GLY A 533 N TYR A 521 SHEET 1 AC 2 SER A 790 THR A 793 0 SHEET 2 AC 2 ARG A 800 SER A 804 -1 O ARG A 800 N THR A 793 LINK N MSE A 461 C GLU A 460 1555 1555 1.32 LINK C MSE A 461 N ARG A 462 1555 1555 1.33 LINK N MSE A 464 C ARG A 463 1555 1555 1.33 LINK C MSE A 464 N PRO A 465 1555 1555 1.35 LINK N MSE A 513 C LYS A 512 1555 1555 1.33 LINK C MSE A 513 N PRO A 514 1555 1555 1.33 LINK N MSE A 597 C ASP A 596 1555 1555 1.33 LINK C MSE A 597 N VAL A 598 1555 1555 1.34 LINK N MSE A 619 C ALA A 618 1555 1555 1.33 LINK C MSE A 619 N ASN A 620 1555 1555 1.32 LINK N MSE A 625 C THR A 624 1555 1555 1.33 LINK C MSE A 625 N SER A 626 1555 1555 1.32 LINK C MSE A 733 N LEU A 734 1555 1555 1.33 LINK N MSE A 733 C GLY A 732 1555 1555 1.34 LINK C MSE A 841 N AARG A 842 1555 1555 1.34 LINK C MSE A 841 N BARG A 842 1555 1555 1.34 LINK N MSE A 841 C LYS A 840 1555 1555 1.33 LINK C MSE A 908 N AARG A 909 1555 1555 1.33 LINK C MSE A 908 N BARG A 909 1555 1555 1.33 LINK N MSE A 908 C LEU A 907 1555 1555 1.33 LINK C MSE A 914 N HIS A 915 1555 1555 1.33 LINK N MSE A 914 C SER A 913 1555 1555 1.32 LINK S1 DTV A1603 SG CYS A 603 1555 1555 2.05 CISPEP 1 MSE A 464 PRO A 465 0 3.20 CISPEP 2 PHE A 498 PRO A 499 0 3.07 SITE 1 AC1 3 LYS A 599 LEU A 602 CYS A 603 SITE 1 AC2 8 TYR A 521 PRO A 522 ARG A 535 LYS A 559 SITE 2 AC2 8 TYR A 560 ASN A 561 VAL A 562 HOH A2095 CRYST1 44.759 66.387 89.323 90.00 95.26 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022342 0.000000 0.002057 0.00000 SCALE2 0.000000 0.015063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011243 0.00000