PDB Short entry for 4B3F HEADER HYDROLASE 24-JUL-12 4B3F TITLE CRYSTAL STRUCTURE OF IGHMBP2 HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SMUBP-2; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: RESIDUES 3-648; COMPND 5 SYNONYM: IGHMBP2, ATP-DEPENDENT HELICASE IGHMBP2, GLIAL FACTOR 1, GF- COMPND 6 1, IMMUNOGLOBULIN MU-BINDING PROTEIN 2; COMPND 7 EC: 3.6.4.12, 3.6.4.13; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, HELICASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.LIM,H.SONG REVDAT 4 16-MAY-18 4B3F 1 REMARK REVDAT 3 02-MAY-18 4B3F 1 REMARK REVDAT 2 19-DEC-12 4B3F 1 JRNL REVDAT 1 26-SEP-12 4B3F 0 JRNL AUTH S.C.LIM,M.W.BOWLER,T.F.LAI,H.SONG JRNL TITL THE IGHMBP2 HELICASE STRUCTURE REVEALS THE MOLECULAR BASIS JRNL TITL 2 FOR DISEASE-CAUSING MUTATIONS IN DMSA1. JRNL REF NUCLEIC ACIDS RES. V. 40 11009 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22965130 JRNL DOI 10.1093/NAR/GKS792 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 23987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.6525 - 5.1989 0.97 2723 158 0.1657 0.2044 REMARK 3 2 5.1989 - 4.1269 0.99 2713 162 0.1495 0.2200 REMARK 3 3 4.1269 - 3.6054 0.99 2690 156 0.1698 0.2573 REMARK 3 4 3.6054 - 3.2758 0.98 2661 137 0.1949 0.2427 REMARK 3 5 3.2758 - 3.0410 0.95 2590 134 0.2190 0.3142 REMARK 3 6 3.0410 - 2.8617 0.91 2474 130 0.2228 0.3014 REMARK 3 7 2.8617 - 2.7184 0.87 2376 128 0.2255 0.3474 REMARK 3 8 2.7184 - 2.6001 0.84 2301 107 0.2449 0.3387 REMARK 3 9 2.6001 - 2.5000 0.82 2241 106 0.2572 0.3426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 66.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.05040 REMARK 3 B22 (A**2) : -12.19050 REMARK 3 B33 (A**2) : 20.24090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.13270 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4927 REMARK 3 ANGLE : 1.181 6666 REMARK 3 CHIRALITY : 0.078 793 REMARK 3 PLANARITY : 0.004 855 REMARK 3 DIHEDRAL : 17.716 1846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN X AND RESID 3:67) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0473 60.6969 14.6171 REMARK 3 T TENSOR REMARK 3 T11: 0.4357 T22: 0.5147 REMARK 3 T33: 0.2958 T12: 0.2120 REMARK 3 T13: -0.0565 T23: 0.2114 REMARK 3 L TENSOR REMARK 3 L11: 2.0121 L22: 0.5345 REMARK 3 L33: 1.2953 L12: 0.2604 REMARK 3 L13: -1.0749 L23: -0.1309 REMARK 3 S TENSOR REMARK 3 S11: 0.4693 S12: 0.5512 S13: 0.6399 REMARK 3 S21: 0.4641 S22: 0.2529 S23: 0.0996 REMARK 3 S31: -0.0549 S32: -0.4596 S33: -0.4498 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN X AND RESID 68:184) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3473 56.5194 15.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.7037 T22: 0.5954 REMARK 3 T33: 0.4299 T12: 0.0774 REMARK 3 T13: 0.0121 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 1.5758 L22: 1.9433 REMARK 3 L33: 0.4696 L12: 0.5656 REMARK 3 L13: -0.4718 L23: 0.1987 REMARK 3 S TENSOR REMARK 3 S11: -0.1010 S12: 0.3907 S13: 0.2523 REMARK 3 S21: 0.0876 S22: 0.4087 S23: -0.0339 REMARK 3 S31: -0.0394 S32: -0.2896 S33: -0.2617 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN X AND RESID 185:254) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9776 33.4607 26.5054 REMARK 3 T TENSOR REMARK 3 T11: 0.2230 T22: 0.2700 REMARK 3 T33: 0.5877 T12: 0.0150 REMARK 3 T13: 0.0632 T23: -0.1776 REMARK 3 L TENSOR REMARK 3 L11: 2.5740 L22: 0.1980 REMARK 3 L33: 1.6070 L12: 0.6147 REMARK 3 L13: -0.3243 L23: -0.1199 REMARK 3 S TENSOR REMARK 3 S11: -0.1661 S12: -0.0553 S13: -1.2057 REMARK 3 S21: 0.0556 S22: 0.1405 S23: -0.3021 REMARK 3 S31: 0.1270 S32: -0.0111 S33: 0.0169 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN X AND RESID 255:309) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7227 60.3687 21.4822 REMARK 3 T TENSOR REMARK 3 T11: 0.4021 T22: 0.3676 REMARK 3 T33: 0.5921 T12: -0.0630 REMARK 3 T13: 0.0373 T23: -0.1366 REMARK 3 L TENSOR REMARK 3 L11: 0.7018 L22: 2.9317 REMARK 3 L33: 1.2310 L12: 0.7813 REMARK 3 L13: -0.2478 L23: -1.5346 REMARK 3 S TENSOR REMARK 3 S11: -0.1582 S12: -0.2108 S13: -0.0679 REMARK 3 S21: 0.1353 S22: -0.0597 S23: -1.1283 REMARK 3 S31: -0.3341 S32: 0.2088 S33: 0.1098 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN X AND RESID 316:441) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4327 44.9790 13.9245 REMARK 3 T TENSOR REMARK 3 T11: 0.5275 T22: 0.5919 REMARK 3 T33: 0.4060 T12: -0.0321 REMARK 3 T13: 0.0762 T23: -0.2057 REMARK 3 L TENSOR REMARK 3 L11: 0.8497 L22: 1.2554 REMARK 3 L33: 0.3005 L12: -0.1664 REMARK 3 L13: -0.0484 L23: -0.1229 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.5228 S13: -0.1689 REMARK 3 S21: -0.5218 S22: 0.0348 S23: -0.0635 REMARK 3 S31: -0.0515 S32: -0.2420 S33: -0.0028 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN X AND RESID 442:648) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5444 43.8676 40.0985 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.0721 REMARK 3 T33: 0.4925 T12: 0.0020 REMARK 3 T13: -0.0632 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.9252 L22: 2.2582 REMARK 3 L33: 1.6029 L12: -0.0945 REMARK 3 L13: 0.0474 L23: 0.6303 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: 0.1060 S13: 0.0280 REMARK 3 S21: -0.0842 S22: 0.1315 S23: 0.7063 REMARK 3 S31: -0.0832 S32: -0.1514 S33: -0.0026 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : ESRF; NSRRC; NSRRC REMARK 200 BEAMLINE : ID14-4; BL13B1; BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795; 0.99315; 1.54 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL; NULL; NULL REMARK 200 DETECTOR MANUFACTURER : NULL; NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 20.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.28300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.35850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.28300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.35850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X 73 REMARK 465 SER X 74 REMARK 465 ALA X 75 REMARK 465 GLU X 120 REMARK 465 SER X 121 REMARK 465 HIS X 122 REMARK 465 ASP X 123 REMARK 465 PHE X 124 REMARK 465 GLN X 125 REMARK 465 LEU X 126 REMARK 465 THR X 310 REMARK 465 GLN X 311 REMARK 465 ASP X 312 REMARK 465 LYS X 313 REMARK 465 ARG X 314 REMARK 465 GLU X 315 REMARK 465 GLU X 503 REMARK 465 GLU X 504 REMARK 465 ASP X 505 REMARK 465 GLU X 506 REMARK 465 GLN X 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR X 186 OG1 CG2 REMARK 470 LEU X 239 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO X 184 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU X 33 -84.38 -80.32 REMARK 500 ASN X 34 31.45 -79.66 REMARK 500 TYR X 60 178.17 56.32 REMARK 500 ARG X 70 157.16 -42.87 REMARK 500 GLU X 97 34.24 -76.15 REMARK 500 ARG X 108 119.32 -178.02 REMARK 500 LYS X 112 26.22 -146.26 REMARK 500 GLU X 131 54.45 -119.23 REMARK 500 ASN X 132 177.67 57.93 REMARK 500 LYS X 157 33.87 -98.74 REMARK 500 HIS X 159 -136.43 -102.86 REMARK 500 SER X 174 -165.68 -129.33 REMARK 500 PRO X 176 109.11 -43.69 REMARK 500 SER X 180 151.60 -37.55 REMARK 500 PRO X 184 139.23 -26.30 REMARK 500 GLU X 208 -72.23 -176.57 REMARK 500 PRO X 216 122.06 -38.03 REMARK 500 LYS X 259 50.44 37.63 REMARK 500 LEU X 265 99.97 -63.79 REMARK 500 ARG X 286 58.02 -93.93 REMARK 500 SER X 287 170.16 60.98 REMARK 500 LYS X 298 -39.21 -38.22 REMARK 500 VAL X 305 13.74 -63.72 REMARK 500 LYS X 308 -42.21 -134.32 REMARK 500 SER X 317 -169.40 -79.71 REMARK 500 ASN X 318 -20.44 66.25 REMARK 500 PRO X 360 -31.25 -34.10 REMARK 500 LEU X 390 36.38 -99.02 REMARK 500 GLN X 403 -167.90 -118.29 REMARK 500 GLU X 429 -72.02 -48.35 REMARK 500 VAL X 434 -36.06 -156.69 REMARK 500 ARG X 469 -22.18 71.83 REMARK 500 GLU X 500 -164.78 -70.55 REMARK 500 VAL X 580 -47.14 68.08 REMARK 500 PHE X 590 -25.31 80.77 REMARK 500 ARG X 605 -66.62 -98.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "XA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 X 1649 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MSZ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE R3H DOMAIN FROM HUMAN SMUBP-2 REMARK 900 RELATED ID: 4B3G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HELICASE IN COMPLEX WITH RNA DBREF 4B3F X 3 648 UNP P38935 SMBP2_HUMAN 3 648 SEQRES 1 X 646 SER ALA ALA VAL GLU SER PHE VAL THR LYS GLN LEU ASP SEQRES 2 X 646 LEU LEU GLU LEU GLU ARG ASP ALA GLU VAL GLU GLU ARG SEQRES 3 X 646 ARG SER TRP GLN GLU ASN ILE SER LEU LYS GLU LEU GLN SEQRES 4 X 646 SER ARG GLY VAL CYS LEU LEU LYS LEU GLN VAL SER SER SEQRES 5 X 646 GLN ARG THR GLY LEU TYR GLY ARG LEU LEU VAL THR PHE SEQRES 6 X 646 GLU PRO ARG ARG TYR GLY SER ALA ALA ALA LEU PRO SER SEQRES 7 X 646 ASN SER PHE THR SER GLY ASP ILE VAL GLY LEU TYR ASP SEQRES 8 X 646 ALA ALA ASN GLU GLY SER GLN LEU ALA THR GLY ILE LEU SEQRES 9 X 646 THR ARG VAL THR GLN LYS SER VAL THR VAL ALA PHE ASP SEQRES 10 X 646 GLU SER HIS ASP PHE GLN LEU SER LEU ASP ARG GLU ASN SEQRES 11 X 646 SER TYR ARG LEU LEU LYS LEU ALA ASN ASP VAL THR TYR SEQRES 12 X 646 ARG ARG LEU LYS LYS ALA LEU ILE ALA LEU LYS LYS TYR SEQRES 13 X 646 HIS SER GLY PRO ALA SER SER LEU ILE GLU VAL LEU PHE SEQRES 14 X 646 GLY ARG SER ALA PRO SER PRO ALA SER GLU ILE HIS PRO SEQRES 15 X 646 LEU THR PHE PHE ASN THR CYS LEU ASP THR SER GLN LYS SEQRES 16 X 646 GLU ALA VAL LEU PHE ALA LEU SER GLN LYS GLU LEU ALA SEQRES 17 X 646 ILE ILE HIS GLY PRO PRO GLY THR GLY LYS THR THR THR SEQRES 18 X 646 VAL VAL GLU ILE ILE LEU GLN ALA VAL LYS GLN GLY LEU SEQRES 19 X 646 LYS VAL LEU CYS CYS ALA PRO SER ASN ILE ALA VAL ASP SEQRES 20 X 646 ASN LEU VAL GLU ARG LEU ALA LEU CYS LYS GLN ARG ILE SEQRES 21 X 646 LEU ARG LEU GLY HIS PRO ALA ARG LEU LEU GLU SER ILE SEQRES 22 X 646 GLN GLN HIS SER LEU ASP ALA VAL LEU ALA ARG SER ASP SEQRES 23 X 646 SER ALA GLN ILE VAL ALA ASP ILE ARG LYS ASP ILE ASP SEQRES 24 X 646 GLN VAL PHE VAL LYS ASN LYS LYS THR GLN ASP LYS ARG SEQRES 25 X 646 GLU LYS SER ASN PHE ARG ASN GLU ILE LYS LEU LEU ARG SEQRES 26 X 646 LYS GLU LEU LYS GLU ARG GLU GLU ALA ALA MET LEU GLU SEQRES 27 X 646 SER LEU THR SER ALA ASN VAL VAL LEU ALA THR ASN THR SEQRES 28 X 646 GLY ALA SER ALA ASP GLY PRO LEU LYS LEU LEU PRO GLU SEQRES 29 X 646 SER TYR PHE ASP VAL VAL VAL ILE ASP GLU CYS ALA GLN SEQRES 30 X 646 ALA LEU GLU ALA SER CYS TRP ILE PRO LEU LEU LYS ALA SEQRES 31 X 646 ARG LYS CYS ILE LEU ALA GLY ASP HIS LYS GLN LEU PRO SEQRES 32 X 646 PRO THR THR VAL SER HIS LYS ALA ALA LEU ALA GLY LEU SEQRES 33 X 646 SER LEU SER LEU MET GLU ARG LEU ALA GLU GLU TYR GLY SEQRES 34 X 646 ALA ARG VAL VAL ARG THR LEU THR VAL GLN TYR ARG MET SEQRES 35 X 646 HIS GLN ALA ILE MET ARG TRP ALA SER ASP THR MET TYR SEQRES 36 X 646 LEU GLY GLN LEU THR ALA HIS SER SER VAL ALA ARG HIS SEQRES 37 X 646 LEU LEU ARG ASP LEU PRO GLY VAL ALA ALA THR GLU GLU SEQRES 38 X 646 THR GLY VAL PRO LEU LEU LEU VAL ASP THR ALA GLY CYS SEQRES 39 X 646 GLY LEU PHE GLU LEU GLU GLU GLU ASP GLU GLN SER LYS SEQRES 40 X 646 GLY ASN PRO GLY GLU VAL ARG LEU VAL SER LEU HIS ILE SEQRES 41 X 646 GLN ALA LEU VAL ASP ALA GLY VAL PRO ALA ARG ASP ILE SEQRES 42 X 646 ALA VAL VAL SER PRO TYR ASN LEU GLN VAL ASP LEU LEU SEQRES 43 X 646 ARG GLN SER LEU VAL HIS ARG HIS PRO GLU LEU GLU ILE SEQRES 44 X 646 LYS SER VAL ASP GLY PHE GLN GLY ARG GLU LYS GLU ALA SEQRES 45 X 646 VAL ILE LEU SER PHE VAL ARG SER ASN ARG LYS GLY GLU SEQRES 46 X 646 VAL GLY PHE LEU ALA GLU ASP ARG ARG ILE ASN VAL ALA SEQRES 47 X 646 VAL THR ARG ALA ARG ARG HIS VAL ALA VAL ILE CYS ASP SEQRES 48 X 646 SER ARG THR VAL ASN ASN HIS ALA PHE LEU LYS THR LEU SEQRES 49 X 646 VAL GLU TYR PHE THR GLN HIS GLY GLU VAL ARG THR ALA SEQRES 50 X 646 PHE GLU TYR LEU ASP ASP ILE VAL PRO HET PO4 X1649 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *99(H2 O) HELIX 1 1 SER X 3 ASN X 34 1 32 HELIX 2 2 SER X 36 GLN X 41 1 6 HELIX 3 3 SER X 42 GLY X 44 5 3 HELIX 4 4 ASN X 141 LYS X 157 1 17 HELIX 5 5 ALA X 163 PHE X 171 1 9 HELIX 6 6 ASP X 193 GLN X 206 1 14 HELIX 7 7 GLY X 219 GLN X 234 1 16 HELIX 8 8 SER X 244 CYS X 258 1 15 HELIX 9 9 LEU X 272 GLN X 277 1 6 HELIX 10 10 SER X 279 ALA X 285 1 7 HELIX 11 11 ILE X 292 ASP X 301 1 10 HELIX 12 12 PHE X 319 ALA X 345 1 27 HELIX 13 13 GLY X 359 LEU X 364 5 6 HELIX 14 14 GLU X 376 ALA X 380 5 5 HELIX 15 15 LEU X 381 TRP X 386 1 6 HELIX 16 16 PRO X 388 ALA X 392 5 5 HELIX 17 17 SER X 410 ALA X 416 1 7 HELIX 18 18 SER X 421 GLY X 431 1 11 HELIX 19 19 HIS X 445 TYR X 457 1 13 HELIX 20 20 LEU X 471 LEU X 475 5 5 HELIX 21 21 ASN X 511 ALA X 528 1 18 HELIX 22 22 PRO X 531 ARG X 533 5 3 HELIX 23 23 TYR X 541 VAL X 553 1 13 HELIX 24 24 ASP X 565 GLN X 568 5 4 HELIX 25 25 GLU X 593 ARG X 603 1 11 HELIX 26 26 ASP X 613 ASN X 618 1 6 HELIX 27 27 HIS X 620 HIS X 633 1 14 HELIX 28 28 PHE X 640 TYR X 642 5 3 SHEET 1 XA 7 CYS X 46 THR X 57 0 SHEET 2 XA 7 TYR X 134 LEU X 139 -1 O TYR X 134 N LEU X 50 SHEET 3 XA 7 ILE X 88 ASP X 93 -1 O ILE X 88 N LEU X 139 SHEET 4 XA 7 ALA X 102 THR X 110 -1 O ALA X 102 N LEU X 91 SHEET 5 XA 7 SER X 113 ALA X 117 -1 O SER X 113 N THR X 110 SHEET 6 XA 7 LEU X 63 PRO X 69 -1 O VAL X 65 N VAL X 116 SHEET 7 XA 7 CYS X 46 THR X 57 -1 O GLN X 51 N GLU X 68 SHEET 1 XB 7 ILE X 262 ARG X 264 0 SHEET 2 XB 7 VAL X 347 THR X 351 1 O VAL X 347 N LEU X 263 SHEET 3 XB 7 VAL X 238 ALA X 242 1 O VAL X 238 N VAL X 348 SHEET 4 XB 7 VAL X 371 ILE X 374 1 O VAL X 371 N LEU X 239 SHEET 5 XB 7 LYS X 394 GLY X 399 1 O LYS X 394 N VAL X 372 SHEET 6 XB 7 LEU X 209 HIS X 213 1 O ALA X 210 N LEU X 397 SHEET 7 XB 7 VAL X 435 THR X 437 1 O ARG X 436 N HIS X 213 SHEET 1 XC 2 VAL X 440 GLN X 441 0 SHEET 2 XC 2 THR X 462 ALA X 463 1 O THR X 462 N GLN X 441 SHEET 1 XD 6 GLU X 560 SER X 563 0 SHEET 2 XD 6 ILE X 535 SER X 539 1 O ILE X 535 N GLU X 560 SHEET 3 XD 6 LYS X 572 SER X 578 1 O ALA X 574 N ALA X 536 SHEET 4 XD 6 ALA X 604 CYS X 612 1 N ARG X 605 O LYS X 572 SHEET 5 XD 6 LEU X 488 ASP X 492 1 O LEU X 489 N VAL X 610 SHEET 6 XD 6 GLU X 635 THR X 638 1 O GLU X 635 N LEU X 490 CISPEP 1 LEU X 48 LYS X 49 0 -11.65 CISPEP 2 ASN X 132 SER X 133 0 -5.05 CISPEP 3 GLY X 266 HIS X 267 0 1.28 CISPEP 4 SER X 287 ASP X 288 0 -5.27 CISPEP 5 ALA X 494 GLY X 495 0 -3.24 SITE 1 AC1 7 PRO X 216 GLY X 217 GLN X 403 ARG X 443 SITE 2 AC1 7 GLY X 569 ARG X 603 HOH X2046 CRYST1 116.566 76.717 88.536 90.00 107.33 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008579 0.000000 0.002677 0.00000 SCALE2 0.000000 0.013035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011832 0.00000