PDB Short entry for 4B6G HEADER HYDROLASE 13-AUG-12 4B6G TITLE THE CRYSTAL STRUCTURE OF THE NEISSERIAL ESTERASE D. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S-FORMYLGLUTATHIONE HYDROLASE PROTEIN; COMPND 5 EC: 3.1.2.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS MC58; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: C311; SOURCE 5 VARIANT: NUMBER 3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMSGC7 KEYWDS HYDROLASE, FORMALDEHYDE DETOXIFICATION, ALPHA/BETA SERINE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.M.COUNAGO,B.KOBE REVDAT 4 20-DEC-23 4B6G 1 REMARK REVDAT 3 28-MAR-18 4B6G 1 JRNL REVDAT 2 13-FEB-13 4B6G 1 JRNL REVDAT 1 14-NOV-12 4B6G 0 JRNL AUTH N.H.CHEN,R.M.COUNAGO,K.Y.DJOKO,M.P.JENNINGS,M.A.APICELLA, JRNL AUTH 2 B.KOBE,A.G.MCEWAN JRNL TITL A GLUTATHIONE-DEPENDENT DETOXIFICATION SYSTEM IS REQUIRED JRNL TITL 2 FOR FORMALDEHYDE RESISTANCE AND OPTIMAL SURVIVAL OF JRNL TITL 3 NEISSERIA MENINGITIDIS IN BIOFILMS. JRNL REF ANTIOXID. REDOX SIGNAL. V. 18 743 2013 JRNL REFN ESSN 1557-7716 JRNL PMID 22937752 JRNL DOI 10.1089/ARS.2012.4749 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 121215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8436 - 4.1355 0.96 4749 139 0.1429 0.1552 REMARK 3 2 4.1355 - 3.2873 0.98 4592 180 0.1337 0.1479 REMARK 3 3 3.2873 - 2.8732 0.99 4603 143 0.1428 0.1549 REMARK 3 4 2.8732 - 2.6111 1.00 4593 142 0.1383 0.1518 REMARK 3 5 2.6111 - 2.4243 1.00 4575 134 0.1329 0.1478 REMARK 3 6 2.4243 - 2.2816 1.00 4553 156 0.1230 0.1300 REMARK 3 7 2.2816 - 2.1675 1.00 4542 146 0.1288 0.1347 REMARK 3 8 2.1675 - 2.0732 1.00 4532 140 0.1281 0.1348 REMARK 3 9 2.0732 - 1.9935 1.00 4563 121 0.1310 0.1503 REMARK 3 10 1.9935 - 1.9248 1.00 4537 131 0.1295 0.1278 REMARK 3 11 1.9248 - 1.8646 1.00 4523 138 0.1320 0.1433 REMARK 3 12 1.8646 - 1.8114 1.00 4511 143 0.1324 0.1372 REMARK 3 13 1.8114 - 1.7637 1.00 4490 145 0.1379 0.1553 REMARK 3 14 1.7637 - 1.7207 1.00 4492 153 0.1462 0.1665 REMARK 3 15 1.7207 - 1.6816 1.00 4500 139 0.1489 0.1712 REMARK 3 16 1.6816 - 1.6458 1.00 4499 127 0.1482 0.1580 REMARK 3 17 1.6458 - 1.6129 1.00 4477 135 0.1442 0.1512 REMARK 3 18 1.6129 - 1.5825 1.00 4505 132 0.1544 0.1563 REMARK 3 19 1.5825 - 1.5542 1.00 4493 122 0.1589 0.1772 REMARK 3 20 1.5542 - 1.5279 1.00 4474 147 0.1645 0.1627 REMARK 3 21 1.5279 - 1.5033 1.00 4444 132 0.1783 0.1762 REMARK 3 22 1.5033 - 1.4801 1.00 4516 126 0.1840 0.1897 REMARK 3 23 1.4801 - 1.4584 1.00 4469 133 0.1915 0.1958 REMARK 3 24 1.4584 - 1.4379 1.00 4471 134 0.2018 0.2566 REMARK 3 25 1.4379 - 1.4184 1.00 4469 111 0.2190 0.2222 REMARK 3 26 1.4184 - 1.4000 1.00 4433 161 0.2209 0.2448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : 0.00 REMARK 3 B_SOL : 0.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4651 REMARK 3 ANGLE : 1.222 6315 REMARK 3 CHIRALITY : 0.077 641 REMARK 3 PLANARITY : 0.007 839 REMARK 3 DIHEDRAL : 14.519 1690 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID -7 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0100 102.0605 30.4042 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: 0.1404 REMARK 3 T33: 0.1437 T12: -0.0092 REMARK 3 T13: 0.0013 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.0347 L22: 0.1193 REMARK 3 L33: 0.0182 L12: 0.0627 REMARK 3 L13: -0.0218 L23: -0.0446 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: -0.1132 S13: 0.0164 REMARK 3 S21: 0.0339 S22: -0.0025 S23: 0.0283 REMARK 3 S31: -0.0328 S32: 0.0467 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 12 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4846 99.6806 21.7720 REMARK 3 T TENSOR REMARK 3 T11: 0.1563 T22: 0.1252 REMARK 3 T33: 0.1543 T12: -0.0006 REMARK 3 T13: -0.0031 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0880 L22: 0.0649 REMARK 3 L33: 0.1368 L12: 0.0705 REMARK 3 L13: -0.0655 L23: -0.0250 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.0049 S13: 0.0635 REMARK 3 S21: 0.0427 S22: -0.0324 S23: 0.0395 REMARK 3 S31: -0.0623 S32: 0.0261 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 35 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6055 90.4300 21.0711 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1141 REMARK 3 T33: 0.1257 T12: -0.0013 REMARK 3 T13: 0.0021 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.2427 L22: 0.4232 REMARK 3 L33: 0.7290 L12: 0.0107 REMARK 3 L13: 0.0643 L23: -0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0215 S13: -0.0122 REMARK 3 S21: 0.0290 S22: -0.0096 S23: 0.0119 REMARK 3 S31: -0.0387 S32: 0.0144 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 100 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9932 91.7852 9.7404 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1268 REMARK 3 T33: 0.1338 T12: 0.0017 REMARK 3 T13: 0.0015 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.2993 L22: 0.2539 REMARK 3 L33: 0.5666 L12: 0.0182 REMARK 3 L13: 0.0351 L23: 0.0412 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0174 S13: -0.0078 REMARK 3 S21: -0.0355 S22: 0.0013 S23: 0.0401 REMARK 3 S31: -0.0492 S32: -0.0260 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 178 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4016 79.8831 5.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1645 REMARK 3 T33: 0.1645 T12: -0.0047 REMARK 3 T13: -0.0043 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1786 L22: 0.3604 REMARK 3 L33: 0.5099 L12: -0.0880 REMARK 3 L13: -0.0543 L23: 0.1719 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: 0.0682 S13: -0.0744 REMARK 3 S21: -0.0645 S22: -0.0354 S23: 0.0532 REMARK 3 S31: 0.0532 S32: -0.0969 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 230 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9752 75.7497 11.1054 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1379 REMARK 3 T33: 0.1418 T12: 0.0061 REMARK 3 T13: 0.0077 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2236 L22: 0.1147 REMARK 3 L33: 0.2849 L12: -0.1251 REMARK 3 L13: 0.0021 L23: 0.1123 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0274 S13: -0.0402 REMARK 3 S21: 0.0028 S22: -0.0320 S23: 0.0105 REMARK 3 S31: 0.0940 S32: 0.0622 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6979 66.8211 34.6417 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.1287 REMARK 3 T33: 0.1785 T12: -0.0308 REMARK 3 T13: 0.0350 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.4677 L22: 0.4099 REMARK 3 L33: 0.3501 L12: -0.0448 REMARK 3 L13: 0.3421 L23: -0.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: 0.0657 S13: -0.0964 REMARK 3 S21: 0.0179 S22: -0.0440 S23: 0.0285 REMARK 3 S31: 0.3181 S32: -0.0987 S33: 0.0223 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 22 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4694 72.5514 45.6658 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.1241 REMARK 3 T33: 0.1571 T12: 0.0080 REMARK 3 T13: 0.0297 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.5138 L22: 0.3772 REMARK 3 L33: 0.8673 L12: -0.1566 REMARK 3 L13: -0.2186 L23: 0.4403 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.0171 S13: -0.0674 REMARK 3 S21: 0.0401 S22: -0.0203 S23: 0.0795 REMARK 3 S31: 0.1715 S32: -0.0421 S33: -0.0012 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 146 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6977 75.2712 53.7751 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.1792 REMARK 3 T33: 0.1535 T12: 0.0436 REMARK 3 T13: 0.0139 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.0747 L22: 0.0884 REMARK 3 L33: 0.0961 L12: 0.0372 REMARK 3 L13: -0.0166 L23: 0.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.1029 S13: -0.0740 REMARK 3 S21: 0.1058 S22: 0.0348 S23: 0.0540 REMARK 3 S31: 0.1021 S32: 0.0719 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 169 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4948 88.4764 57.4932 REMARK 3 T TENSOR REMARK 3 T11: 0.1777 T22: 0.1690 REMARK 3 T33: 0.1731 T12: 0.0012 REMARK 3 T13: 0.0177 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.0333 L22: 0.0677 REMARK 3 L33: 0.0424 L12: -0.0397 REMARK 3 L13: 0.0005 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.0578 S13: 0.0708 REMARK 3 S21: 0.0835 S22: -0.0357 S23: 0.0483 REMARK 3 S31: -0.0460 S32: 0.0154 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 189 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2404 82.3406 63.8736 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.2413 REMARK 3 T33: 0.1486 T12: 0.0231 REMARK 3 T13: 0.0025 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.2820 L22: 0.2861 REMARK 3 L33: 0.0785 L12: 0.2515 REMARK 3 L13: 0.0287 L23: -0.0211 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: -0.2715 S13: -0.0029 REMARK 3 S21: 0.1771 S22: -0.0500 S23: 0.0471 REMARK 3 S31: 0.0660 S32: 0.2094 S33: 0.0015 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 214 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0555 93.2504 46.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.1638 REMARK 3 T33: 0.1674 T12: -0.0012 REMARK 3 T13: 0.0180 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.0975 L22: 0.1175 REMARK 3 L33: 0.0979 L12: 0.1072 REMARK 3 L13: -0.0071 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.0924 S12: -0.0496 S13: 0.0438 REMARK 3 S21: -0.0287 S22: -0.0385 S23: 0.0156 REMARK 3 S31: -0.1455 S32: 0.1241 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESID 230 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1722 90.0560 51.0750 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.2356 REMARK 3 T33: 0.1617 T12: -0.0244 REMARK 3 T13: -0.0237 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.1447 L22: 0.1775 REMARK 3 L33: 0.1928 L12: -0.0846 REMARK 3 L13: -0.1643 L23: 0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.0746 S13: 0.1277 REMARK 3 S21: 0.0448 S22: -0.0282 S23: -0.1094 REMARK 3 S31: -0.1248 S32: 0.3079 S33: 0.0004 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESID 256 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9212 79.9926 39.3469 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.1596 REMARK 3 T33: 0.1462 T12: 0.0216 REMARK 3 T13: 0.0067 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.0612 L22: 0.0410 REMARK 3 L33: 0.1441 L12: -0.0336 REMARK 3 L13: -0.0840 L23: 0.0194 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: -0.0278 S13: -0.0428 REMARK 3 S21: 0.0187 S22: 0.0592 S23: 0.0493 REMARK 3 S31: 0.0050 S32: 0.1258 S33: -0.0031 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290049945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 (SI111) REMARK 200 OPTICS : SILICON MIRRORS (ADAPTIVE AND U REMARK 200 -BENT) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 151514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FCX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM BIS-TRIS (PH 6.5), 200 MM REMARK 280 LITHIUM SULFATE AND 25% PEG 3350. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.24067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.62033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.93050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.31017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 141.55083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.24067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.62033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.31017 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.93050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 141.55083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 37 62.89 -163.10 REMARK 500 THR A 53 -4.31 74.15 REMARK 500 THR A 55 -162.52 -112.79 REMARK 500 ALA A 100 48.74 -148.14 REMARK 500 SER A 145 -117.03 64.61 REMARK 500 GLN A 159 -107.63 48.91 REMARK 500 ASP A 253 -155.96 -105.73 REMARK 500 ASN B 37 65.64 -160.47 REMARK 500 THR B 53 -6.14 76.69 REMARK 500 THR B 55 -160.68 -112.54 REMARK 500 ALA B 100 47.69 -149.42 REMARK 500 SER B 145 -114.69 66.58 REMARK 500 ASP B 253 -155.26 -107.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2077 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2089 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A2182 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A2186 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2187 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B2003 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B2135 DISTANCE = 6.18 ANGSTROMS DBREF 4B6G A 3 275 UNP Q9JZ43 Q9JZ43_NEIMB 3 275 DBREF 4B6G B 3 275 UNP Q9JZ43 Q9JZ43_NEIMB 3 275 SEQADV 4B6G GLU A -7 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G ASN A -6 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G LEU A -5 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G TYR A -4 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G PHE A -3 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G GLN A -2 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G GLY A -1 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G ALA A 0 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G MET A 1 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G GLU A 2 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G GLU B -7 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G ASN B -6 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G LEU B -5 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G TYR B -4 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G PHE B -3 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G GLN B -2 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G GLY B -1 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G ALA B 0 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G MET B 1 UNP Q9JZ43 EXPRESSION TAG SEQADV 4B6G GLU B 2 UNP Q9JZ43 EXPRESSION TAG SEQRES 1 A 283 GLU ASN LEU TYR PHE GLN GLY ALA MET GLU LEU ILE GLU SEQRES 2 A 283 GLN HIS GLN ILE PHE GLY GLY SER GLN GLN VAL TRP ALA SEQRES 3 A 283 HIS HIS ALA GLN THR LEU GLN CYS GLU MET LYS PHE ALA SEQRES 4 A 283 VAL TYR LEU PRO ASN ASN PRO GLU ASN ARG PRO LEU GLY SEQRES 5 A 283 VAL ILE TYR TRP LEU SER GLY LEU THR CYS THR GLU GLN SEQRES 6 A 283 ASN PHE ILE THR LYS SER GLY PHE GLN ARG TYR ALA ALA SEQRES 7 A 283 GLU HIS GLN VAL ILE VAL VAL ALA PRO ASP THR SER PRO SEQRES 8 A 283 ARG GLY GLU GLN VAL PRO ASN ASP ASP ALA TYR ASP LEU SEQRES 9 A 283 GLY GLN SER ALA GLY PHE TYR LEU ASN ALA THR GLU GLN SEQRES 10 A 283 PRO TRP ALA ALA ASN TYR GLN MET TYR ASP TYR ILE LEU SEQRES 11 A 283 ASN GLU LEU PRO ARG LEU ILE GLU LYS HIS PHE PRO THR SEQRES 12 A 283 ASN GLY LYS ARG SER ILE MET GLY HIS SER MET GLY GLY SEQRES 13 A 283 HIS GLY ALA LEU VAL LEU ALA LEU ARG ASN GLN GLU ARG SEQRES 14 A 283 TYR GLN SER VAL SER ALA PHE SER PRO ILE LEU SER PRO SEQRES 15 A 283 SER LEU VAL PRO TRP GLY GLU LYS ALA PHE THR ALA TYR SEQRES 16 A 283 LEU GLY LYS ASP ARG GLU LYS TRP GLN GLN TYR ASP ALA SEQRES 17 A 283 ASN SER LEU ILE GLN GLN GLY TYR LYS VAL GLN GLY MET SEQRES 18 A 283 ARG ILE ASP GLN GLY LEU GLU ASP GLU PHE LEU PRO THR SEQRES 19 A 283 GLN LEU ARG THR GLU ASP PHE ILE GLU THR CYS ARG ALA SEQRES 20 A 283 ALA ASN GLN PRO VAL ASP VAL ARG PHE HIS LYS GLY TYR SEQRES 21 A 283 ASP HIS SER TYR TYR PHE ILE ALA SER PHE ILE GLY GLU SEQRES 22 A 283 HIS ILE ALA TYR HIS ALA ALA PHE LEU LYS SEQRES 1 B 283 GLU ASN LEU TYR PHE GLN GLY ALA MET GLU LEU ILE GLU SEQRES 2 B 283 GLN HIS GLN ILE PHE GLY GLY SER GLN GLN VAL TRP ALA SEQRES 3 B 283 HIS HIS ALA GLN THR LEU GLN CYS GLU MET LYS PHE ALA SEQRES 4 B 283 VAL TYR LEU PRO ASN ASN PRO GLU ASN ARG PRO LEU GLY SEQRES 5 B 283 VAL ILE TYR TRP LEU SER GLY LEU THR CYS THR GLU GLN SEQRES 6 B 283 ASN PHE ILE THR LYS SER GLY PHE GLN ARG TYR ALA ALA SEQRES 7 B 283 GLU HIS GLN VAL ILE VAL VAL ALA PRO ASP THR SER PRO SEQRES 8 B 283 ARG GLY GLU GLN VAL PRO ASN ASP ASP ALA TYR ASP LEU SEQRES 9 B 283 GLY GLN SER ALA GLY PHE TYR LEU ASN ALA THR GLU GLN SEQRES 10 B 283 PRO TRP ALA ALA ASN TYR GLN MET TYR ASP TYR ILE LEU SEQRES 11 B 283 ASN GLU LEU PRO ARG LEU ILE GLU LYS HIS PHE PRO THR SEQRES 12 B 283 ASN GLY LYS ARG SER ILE MET GLY HIS SER MET GLY GLY SEQRES 13 B 283 HIS GLY ALA LEU VAL LEU ALA LEU ARG ASN GLN GLU ARG SEQRES 14 B 283 TYR GLN SER VAL SER ALA PHE SER PRO ILE LEU SER PRO SEQRES 15 B 283 SER LEU VAL PRO TRP GLY GLU LYS ALA PHE THR ALA TYR SEQRES 16 B 283 LEU GLY LYS ASP ARG GLU LYS TRP GLN GLN TYR ASP ALA SEQRES 17 B 283 ASN SER LEU ILE GLN GLN GLY TYR LYS VAL GLN GLY MET SEQRES 18 B 283 ARG ILE ASP GLN GLY LEU GLU ASP GLU PHE LEU PRO THR SEQRES 19 B 283 GLN LEU ARG THR GLU ASP PHE ILE GLU THR CYS ARG ALA SEQRES 20 B 283 ALA ASN GLN PRO VAL ASP VAL ARG PHE HIS LYS GLY TYR SEQRES 21 B 283 ASP HIS SER TYR TYR PHE ILE ALA SER PHE ILE GLY GLU SEQRES 22 B 283 HIS ILE ALA TYR HIS ALA ALA PHE LEU LYS FORMUL 3 HOH *726(H2 O) HELIX 1 1 GLU A 56 SER A 63 1 8 HELIX 2 2 PHE A 65 GLN A 73 1 9 HELIX 3 3 PRO A 110 ASN A 114 5 5 HELIX 4 4 GLN A 116 ASN A 123 1 8 HELIX 5 5 ASN A 123 PHE A 133 1 11 HELIX 6 6 SER A 145 GLN A 159 1 15 HELIX 7 7 GLU A 160 TYR A 162 5 3 HELIX 8 8 SER A 173 LEU A 176 5 4 HELIX 9 9 VAL A 177 GLY A 189 1 13 HELIX 10 10 ASP A 191 TYR A 198 5 8 HELIX 11 11 ASP A 199 GLY A 207 1 9 HELIX 12 12 PHE A 223 LEU A 228 1 6 HELIX 13 13 ARG A 229 ASN A 241 1 13 HELIX 14 14 SER A 255 ALA A 272 1 18 HELIX 15 15 GLU B 56 SER B 63 1 8 HELIX 16 16 PHE B 65 GLN B 73 1 9 HELIX 17 17 PRO B 110 ASN B 114 5 5 HELIX 18 18 GLN B 116 ASN B 123 1 8 HELIX 19 19 ASN B 123 PHE B 133 1 11 HELIX 20 20 SER B 145 ASN B 158 1 14 HELIX 21 21 GLN B 159 TYR B 162 5 4 HELIX 22 22 SER B 173 LEU B 176 5 4 HELIX 23 23 VAL B 177 GLY B 189 1 13 HELIX 24 24 ASP B 191 TYR B 198 5 8 HELIX 25 25 ASP B 199 GLN B 206 1 8 HELIX 26 26 PHE B 223 LEU B 228 1 6 HELIX 27 27 ARG B 229 ASN B 241 1 13 HELIX 28 28 SER B 255 LEU B 274 1 20 SHEET 1 AA10 PHE A -3 GLN A -2 0 SHEET 2 AA10 MET A 1 ILE A 9 -1 O MET A 1 N GLN A -2 SHEET 3 AA10 GLY A 12 ALA A 21 -1 O GLY A 12 N ILE A 9 SHEET 4 AA10 CYS A 26 LEU A 34 -1 O CYS A 26 N ALA A 21 SHEET 5 AA10 ILE A 75 PRO A 79 -1 O VAL A 76 N TYR A 33 SHEET 6 AA10 LEU A 43 LEU A 49 1 O GLY A 44 N ILE A 75 SHEET 7 AA10 THR A 135 HIS A 144 1 N ASN A 136 O LEU A 43 SHEET 8 AA10 VAL A 165 PHE A 168 1 O SER A 166 N GLY A 143 SHEET 9 AA10 ARG A 214 GLY A 218 1 O ARG A 214 N ALA A 167 SHEET 10 AA10 ASP A 245 HIS A 249 1 O ASP A 245 N ILE A 215 SHEET 1 BA 9 GLU B 2 ILE B 9 0 SHEET 2 BA 9 GLY B 12 ALA B 21 -1 O GLY B 12 N ILE B 9 SHEET 3 BA 9 CYS B 26 LEU B 34 -1 O CYS B 26 N ALA B 21 SHEET 4 BA 9 ILE B 75 PRO B 79 -1 O VAL B 76 N TYR B 33 SHEET 5 BA 9 LEU B 43 LEU B 49 1 O GLY B 44 N ILE B 75 SHEET 6 BA 9 THR B 135 HIS B 144 1 N ASN B 136 O LEU B 43 SHEET 7 BA 9 VAL B 165 PHE B 168 1 O SER B 166 N GLY B 143 SHEET 8 BA 9 ARG B 214 GLY B 218 1 O ARG B 214 N ALA B 167 SHEET 9 BA 9 ASP B 245 HIS B 249 1 O ASP B 245 N ILE B 215 CISPEP 1 GLN A 109 PRO A 110 0 6.77 CISPEP 2 GLN B 109 PRO B 110 0 3.44 CRYST1 111.268 111.268 169.861 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008987 0.005189 0.000000 0.00000 SCALE2 0.000000 0.010378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005887 0.00000