PDB Short entry for 4B9T HEADER TRANSFERASE/DNA 06-SEP-12 4B9T TITLE STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE TITLE 2 FORMAMIDOPYRIMIDINE-DG DNA LESION -DC BASEPAIR IN THE POST-INSERTION TITLE 3 SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA POLYMERASE I; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*AP*CP*CP*TP*GP*AP*CP*TP*CP*TP)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*CP*AP*TP*FOXP*AP*GP*AP*GP*TP*CP*AP*GP*GP*TP*TP)-3'; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PDEST007; SOURCE 8 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS DSM NO. 22; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 12 ORGANISM_TAXID: 1422; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 16 ORGANISM_TAXID: 1422 KEYWDS TRANSFERASE-DNA COMPLEX, OXIDATIVE DNA LESION, DNA DAMAGE, KEYWDS 2 TRANSLESION DNA SYNTHESIS, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR T.H.GEHRKE,U.LISCHKE,S.ARNOLD,S.SCHNEIDER,T.CARELL REVDAT 5 20-DEC-23 4B9T 1 REMARK LINK REVDAT 4 03-JUL-13 4B9T 1 JRNL REVDAT 3 29-MAY-13 4B9T 1 JRNL REVDAT 2 22-MAY-13 4B9T 1 AUTHOR JRNL REVDAT 1 17-APR-13 4B9T 0 JRNL AUTH T.H.GEHRKE,U.LISCHKE,K.L.GASTEIGER,S.SCHNEIDER,S.ARNOLD, JRNL AUTH 2 H.C.MULLER,D.S.STEPHENSON,H.ZIPSE,T.CARELL JRNL TITL UNEXPECTED NON-HOOGSTEEN-BASED MUTAGENICITY MECHANISM OF JRNL TITL 2 FAPY-DNA LESIONS. JRNL REF NAT.CHEM.BIOL. V. 9 455 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23685671 JRNL DOI 10.1038/NCHEMBIO.1254 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 23432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1240 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1733 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4653 REMARK 3 NUCLEIC ACID ATOMS : 473 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.77000 REMARK 3 B22 (A**2) : -2.37000 REMARK 3 B33 (A**2) : -2.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.856 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5278 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3496 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7232 ; 1.181 ; 2.090 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8536 ; 4.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 4.661 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;31.801 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 874 ;14.839 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.069 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 812 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5494 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 998 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2902 ; 0.964 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1161 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4680 ; 1.706 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2376 ; 1.930 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2551 ; 3.556 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9255 16.8482 -50.3758 REMARK 3 T TENSOR REMARK 3 T11: 0.5506 T22: 0.5299 REMARK 3 T33: 0.5296 T12: -0.0020 REMARK 3 T13: -0.0083 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.3682 L22: 0.2345 REMARK 3 L33: 0.3381 L12: 0.1643 REMARK 3 L13: 0.0940 L23: -0.0865 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.0351 S13: -0.0085 REMARK 3 S21: -0.0264 S22: 0.0286 S23: -0.0227 REMARK 3 S31: 0.0132 S32: 0.0141 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 405 A 458 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3352 28.5946 -42.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.5384 T22: 0.5103 REMARK 3 T33: 0.5326 T12: 0.0016 REMARK 3 T13: -0.0035 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.9409 L22: 0.4990 REMARK 3 L33: 0.7343 L12: -0.0326 REMARK 3 L13: 0.3355 L23: -0.0856 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.0697 S13: 0.0409 REMARK 3 S21: 0.0019 S22: 0.0206 S23: 0.0352 REMARK 3 S31: -0.0396 S32: -0.0510 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 459 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3995 7.9810 -35.0804 REMARK 3 T TENSOR REMARK 3 T11: 0.5482 T22: 0.5374 REMARK 3 T33: 0.5366 T12: 0.0004 REMARK 3 T13: -0.0044 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.2142 L22: 0.2609 REMARK 3 L33: 0.1012 L12: 0.1546 REMARK 3 L13: 0.0024 L23: -0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0088 S13: -0.0480 REMARK 3 S21: -0.0196 S22: -0.0218 S23: -0.0697 REMARK 3 S31: 0.0197 S32: 0.0242 S33: 0.0109 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 504 A 572 REMARK 3 ORIGIN FOR THE GROUP (A): -40.5284 10.6737 -6.8147 REMARK 3 T TENSOR REMARK 3 T11: 0.4811 T22: 0.4531 REMARK 3 T33: 0.4265 T12: 0.0152 REMARK 3 T13: 0.0305 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.3510 L22: 1.4555 REMARK 3 L33: 2.8440 L12: -0.4485 REMARK 3 L13: -0.2755 L23: 0.5182 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.2828 S13: 0.0148 REMARK 3 S21: 0.0571 S22: 0.0268 S23: -0.0776 REMARK 3 S31: -0.0617 S32: 0.0576 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 573 A 638 REMARK 3 ORIGIN FOR THE GROUP (A): -26.0179 3.3220 -25.1803 REMARK 3 T TENSOR REMARK 3 T11: 0.5610 T22: 0.5613 REMARK 3 T33: 0.5477 T12: 0.0001 REMARK 3 T13: -0.0035 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.2908 L22: 0.0600 REMARK 3 L33: 0.0900 L12: -0.1206 REMARK 3 L13: -0.1610 L23: 0.0653 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.0466 S13: -0.0613 REMARK 3 S21: -0.0073 S22: -0.0322 S23: -0.0267 REMARK 3 S31: -0.0126 S32: 0.0338 S33: 0.0431 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 639 A 681 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8097 -5.2936 -18.3171 REMARK 3 T TENSOR REMARK 3 T11: 0.5462 T22: 0.5281 REMARK 3 T33: 0.5261 T12: 0.0005 REMARK 3 T13: -0.0010 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.4252 L22: 0.0456 REMARK 3 L33: 0.4651 L12: 0.0415 REMARK 3 L13: 0.4235 L23: 0.0810 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: 0.0237 S13: 0.0062 REMARK 3 S21: -0.0075 S22: 0.0147 S23: 0.0168 REMARK 3 S31: 0.0205 S32: 0.0423 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 682 A 743 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6750 3.1860 0.6753 REMARK 3 T TENSOR REMARK 3 T11: 0.5365 T22: 0.5097 REMARK 3 T33: 0.5088 T12: -0.0014 REMARK 3 T13: 0.0307 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.8531 L22: 1.4889 REMARK 3 L33: 0.7925 L12: 0.0242 REMARK 3 L13: -0.2403 L23: -0.1621 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.0189 S13: 0.0972 REMARK 3 S21: 0.0216 S22: -0.0454 S23: 0.0983 REMARK 3 S31: -0.0925 S32: 0.0566 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 744 A 876 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5488 3.0664 -22.5159 REMARK 3 T TENSOR REMARK 3 T11: 0.5531 T22: 0.5342 REMARK 3 T33: 0.5450 T12: -0.0021 REMARK 3 T13: -0.0052 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.1136 L22: 0.2632 REMARK 3 L33: 0.1116 L12: 0.1645 REMARK 3 L13: 0.1123 L23: 0.1606 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.0014 S13: -0.0023 REMARK 3 S21: 0.0197 S22: 0.0004 S23: -0.0005 REMARK 3 S31: 0.0050 S32: -0.0027 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 23 REMARK 3 ORIGIN FOR THE GROUP (A): -31.5450 26.0004 -24.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.5192 T22: 0.3001 REMARK 3 T33: 0.3745 T12: 0.0480 REMARK 3 T13: -0.0140 T23: 0.0948 REMARK 3 L TENSOR REMARK 3 L11: 8.5633 L22: 6.6242 REMARK 3 L33: 2.1524 L12: 7.2342 REMARK 3 L13: -4.2669 L23: -3.4905 REMARK 3 S TENSOR REMARK 3 S11: 0.6453 S12: -0.1618 S13: 0.2614 REMARK 3 S21: 0.4767 S22: -0.4238 S23: 0.1459 REMARK 3 S31: -0.3979 S32: 0.0320 S33: -0.2215 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9089 9.2812 -15.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.5287 T22: 0.5732 REMARK 3 T33: 0.5095 T12: -0.0092 REMARK 3 T13: -0.0239 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 0.1149 L22: 0.0456 REMARK 3 L33: 2.8496 L12: 0.0704 REMARK 3 L13: -0.5675 L23: -0.3377 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: -0.0568 S13: -0.0565 REMARK 3 S21: 0.0486 S22: -0.1308 S23: -0.0246 REMARK 3 S31: -0.0173 S32: 0.1836 S33: 0.1838 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 11 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1494 13.9349 -20.1252 REMARK 3 T TENSOR REMARK 3 T11: 0.4752 T22: 0.3510 REMARK 3 T33: 0.4232 T12: 0.1215 REMARK 3 T13: -0.1392 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 1.7712 L22: 1.3490 REMARK 3 L33: 4.3832 L12: 0.6262 REMARK 3 L13: -2.0015 L23: 0.8360 REMARK 3 S TENSOR REMARK 3 S11: -0.1404 S12: 0.4084 S13: -0.1846 REMARK 3 S21: 0.0287 S22: 0.2071 S23: -0.2237 REMARK 3 S31: 0.0807 S32: -0.1977 S33: -0.0666 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 12 C 15 REMARK 3 ORIGIN FOR THE GROUP (A): -37.9770 29.8349 -21.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.8673 T22: 0.2975 REMARK 3 T33: 1.6947 T12: 0.3024 REMARK 3 T13: 0.0903 T23: -0.1762 REMARK 3 L TENSOR REMARK 3 L11: 18.6330 L22: 6.6850 REMARK 3 L33: 10.3264 L12: 10.6434 REMARK 3 L13: -13.6200 L23: -7.3077 REMARK 3 S TENSOR REMARK 3 S11: 1.7498 S12: -1.1143 S13: 2.5582 REMARK 3 S21: 0.7934 S22: -0.6412 S23: 2.3563 REMARK 3 S31: -1.3346 S32: 0.7896 S33: -1.1086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4B9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290053986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 43.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1U45 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.19050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.80400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.88750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.80400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.19050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.88750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 258 REMARK 465 ALA A 259 REMARK 465 SER A 260 REMARK 465 TRP A 261 REMARK 465 SER A 262 REMARK 465 HIS A 263 REMARK 465 PRO A 264 REMARK 465 GLN A 265 REMARK 465 PHE A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 SER A 271 REMARK 465 THR A 272 REMARK 465 SER A 273 REMARK 465 LEU A 274 REMARK 465 TYR A 275 REMARK 465 LYS A 276 REMARK 465 LYS A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 SER A 280 REMARK 465 ALA A 281 REMARK 465 ALA A 282 REMARK 465 ALA A 283 REMARK 465 VAL A 284 REMARK 465 LEU A 285 REMARK 465 GLU A 286 REMARK 465 GLU A 287 REMARK 465 ASN A 288 REMARK 465 LEU A 289 REMARK 465 TYR A 290 REMARK 465 PHE A 291 REMARK 465 GLN A 292 REMARK 465 GLY A 293 REMARK 465 SER A 294 REMARK 465 PHE A 295 REMARK 465 THR A 296 REMARK 465 DC C 1 REMARK 465 DA C 2 REMARK 465 DA C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 552 OP1 DA B 24 1.59 REMARK 500 O HOH A 2003 O HOH A 2004 2.10 REMARK 500 O PHE A 371 O HOH A 2012 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2056 O HOH A 2058 3554 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 61.23 63.86 REMARK 500 ASP A 402 96.43 -165.57 REMARK 500 ALA A 421 34.41 -82.00 REMARK 500 LEU A 477 -68.74 -121.39 REMARK 500 GLU A 540 -54.95 -120.05 REMARK 500 ILE A 588 -62.61 -98.85 REMARK 500 LEU A 610 -58.06 -122.79 REMARK 500 ILE A 628 -44.95 -132.33 REMARK 500 ASP A 680 104.81 -58.12 REMARK 500 HIS A 768 13.02 86.05 REMARK 500 HIS A 829 -61.66 69.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ((1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-3, REMARK 600 6-DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL)METHYL REMARK 600 5'-PHOSPHATE (FOX): ALSO PRESENT IN PDB CODE 1TDZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1877 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 653 OD2 REMARK 620 2 ASP A 830 OD2 103.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1877 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1878 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1879 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XO7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DA:O-ALLYLHYDROXYLAMINE-DC BASEPAIR IN REMARK 900 COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ARTIFICIAL SALEN-COPPER BASEPAIR IN COMPLEX REMARK 900 WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SALICYLIC ALDEHYDE BASEPAIR IN COMPLEX WITH REMARK 900 FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SALICYLIC ALDEHYDE BASE IN THE PRE-INSERTION REMARK 900 SITE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2Y1I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A S-DIASTEREOMER ANALOGUE OF THE SPORE REMARK 900 PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM REMARK 900 BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2Y1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A R-DIASTEREOMER ANALOGUE OF THE SPORE REMARK 900 PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM REMARK 900 BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 4B9L RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH THE OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE A DNA LESION IN THE PRE-INSERTION SITE. REMARK 900 RELATED ID: 4B9M RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE A DNA LESION -THYMINE BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 900 RELATED ID: 4B9N RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I CORRECTLY BYPASSING REMARK 900 THE OXIDATIVE FORMAMIDOPYRIMIDINE A DNA LESION. REMARK 900 RELATED ID: 4B9S RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE DG DNA LESION OUTSIDE OF THE PRE-INSERTION SITE. REMARK 900 RELATED ID: 4B9U RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE DG DNA LESION -DA BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 900 RELATED ID: 4B9V RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH EXTENDING FROM REMARK 900 AN OXIDATIVE FORMAMIDOPYRIMIDINE DG DNA LESION -DA BASEPAIR. REMARK 999 REMARK 999 SEQUENCE REMARK 999 1-39 DISORDERED REMARK 999 RESIDUES 1-3 ARE DISORDERED DBREF 4B9T A 297 876 UNP E1C9K5 E1C9K5_GEOSE 1 580 DBREF 4B9T B 19 29 PDB 4B9T 4B9T 19 29 DBREF 4B9T C 1 15 PDB 4B9T 4B9T 1 15 SEQADV 4B9T MET A 258 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T ALA A 259 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T SER A 260 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T TRP A 261 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T SER A 262 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T HIS A 263 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T PRO A 264 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T GLN A 265 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T PHE A 266 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T GLU A 267 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T LYS A 268 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T GLY A 269 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T ALA A 270 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T SER A 271 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T THR A 272 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T SER A 273 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T LEU A 274 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T TYR A 275 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T LYS A 276 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T LYS A 277 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T ALA A 278 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T GLY A 279 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T SER A 280 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T ALA A 281 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T ALA A 282 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T ALA A 283 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T VAL A 284 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T LEU A 285 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T GLU A 286 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T GLU A 287 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T ASN A 288 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T LEU A 289 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T TYR A 290 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T PHE A 291 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T GLN A 292 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T GLY A 293 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T SER A 294 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T PHE A 295 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9T THR A 296 UNP E1C9K5 EXPRESSION TAG SEQRES 1 A 619 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 619 SER THR SER LEU TYR LYS LYS ALA GLY SER ALA ALA ALA SEQRES 3 A 619 VAL LEU GLU GLU ASN LEU TYR PHE GLN GLY SER PHE THR SEQRES 4 A 619 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 5 A 619 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 6 A 619 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 7 A 619 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 8 A 619 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 9 A 619 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 10 A 619 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 11 A 619 CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 12 A 619 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 13 A 619 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 14 A 619 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 15 A 619 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 16 A 619 ALA ILE TRP ALA LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 17 A 619 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 18 A 619 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 19 A 619 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 20 A 619 GLU GLU LEU ALA GLU GLN LEU ARG THR VAL GLU GLN ARG SEQRES 21 A 619 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 22 A 619 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 23 A 619 LEU PRO VAL LEU LYS LYS SER LYS THR GLY TYR SER THR SEQRES 24 A 619 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 25 A 619 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 26 A 619 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 27 A 619 ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 28 A 619 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 29 A 619 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 30 A 619 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 31 A 619 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 32 A 619 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 33 A 619 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 34 A 619 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 35 A 619 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE SEQRES 36 A 619 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 37 A 619 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 38 A 619 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 39 A 619 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 40 A 619 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 41 A 619 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 42 A 619 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 43 A 619 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 44 A 619 GLU GLU ARG LEU GLN ALA ARG LEU LEU LEU GLN VAL HIS SEQRES 45 A 619 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 46 A 619 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 47 A 619 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 48 A 619 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 B 11 DG DC DC DT DG DA DC DT DC DG DC SEQRES 1 C 15 DC DA DA FOX DC DG DA DG DT DC DA DG DG SEQRES 2 C 15 DC DA MODRES 4B9T FOX C 4 DG HET FOX C 4 23 HET MG A1877 1 HET SO4 A1878 5 HET SO4 A1879 5 HETNAM FOX ((1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-3,6- HETNAM 2 FOX DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL) HETNAM 3 FOX METHYL 5'-PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 FOX C11 H18 N5 O7 P FORMUL 4 MG MG 2+ FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *59(H2 O) HELIX 1 1 THR A 308 LEU A 312 5 5 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 TRP A 382 1 11 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 TYR A 429 1 6 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 GLU A 476 1 7 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 ALA A 565 1 9 HELIX 16 16 PRO A 566 HIS A 568 5 3 HELIX 17 17 GLU A 569 TYR A 587 1 19 HELIX 18 18 ILE A 588 VAL A 595 1 8 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 ASP A 680 PHE A 690 1 11 HELIX 24 24 SER A 693 VAL A 697 5 5 HELIX 25 25 THR A 698 TYR A 714 1 17 HELIX 26 26 SER A 717 ASN A 726 1 10 HELIX 27 27 SER A 728 PHE A 743 1 16 HELIX 28 28 PHE A 743 GLY A 761 1 19 HELIX 29 29 PRO A 774 SER A 778 5 5 HELIX 30 30 ASN A 780 GLU A 818 1 39 HELIX 31 31 GLU A 840 GLN A 854 1 15 SHEET 1 AA 6 THR A 302 LEU A 303 0 SHEET 2 AA 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 AA 6 GLY A 334 ASN A 339 -1 O ILE A 335 N LEU A 346 SHEET 4 AA 6 LYS A 315 GLU A 321 -1 O ALA A 317 N VAL A 338 SHEET 5 AA 6 LYS A 367 MET A 370 1 O LYS A 367 N ALA A 316 SHEET 6 AA 6 VAL A 390 ASP A 393 1 N SER A 391 O LYS A 368 SHEET 1 AB 3 LYS A 601 VAL A 602 0 SHEET 2 AB 3 VAL A 493 VAL A 495 -1 O VAL A 493 N VAL A 602 SHEET 3 AB 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 AC 2 ILE A 605 ASN A 607 0 SHEET 2 AC 2 SER A 617 THR A 619 -1 O SER A 617 N ASN A 607 SHEET 1 AD 4 ARG A 823 VAL A 828 0 SHEET 2 AD 4 GLU A 831 PRO A 837 -1 O GLU A 831 N VAL A 828 SHEET 3 AD 4 TRP A 647 TYR A 654 -1 O LEU A 648 N ALA A 836 SHEET 4 AD 4 VAL A 864 GLY A 869 -1 O ASP A 865 N ASP A 653 SHEET 1 AE 2 TYR A 762 THR A 764 0 SHEET 2 AE 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 LINK O3' FOX C 4 P DC C 5 1555 1555 1.59 LINK OD2 ASP A 653 MG MG A1877 1555 1555 2.51 LINK OD2BASP A 830 MG MG A1877 1555 1555 2.52 CISPEP 1 GLU A 620 PRO A 621 0 9.07 SITE 1 AC1 2 ASP A 653 TYR A 654 SITE 1 AC2 4 HIS A 682 ARG A 702 LYS A 706 HOH A2049 SITE 1 AC3 4 ALA A 300 ARG A 343 ARG A 677 HOH A2052 CRYST1 88.381 93.775 105.608 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009469 0.00000