PDB Short entry for 4BC2 HEADER TRANSFERASE 01-OCT-12 4BC2 TITLE CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH D-XYLULOSE TITLE 2 AND ADENOSINE DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLULOSE KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: D-XYLULOKINASE, XYLULOKINASE; COMPND 5 EC: 2.7.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX KEYWDS TRANSFERASE, GLUCURONATE XYLULOKINASE PATHWAY, FGGY CARBOHYDRATE KEYWDS 2 KINASE EXPDTA X-RAY DIFFRACTION AUTHOR R.D.BUNKER,K.M.LOOMES,E.N.BAKER REVDAT 6 08-JUL-20 4BC2 1 LINK REVDAT 5 06-FEB-13 4BC2 1 HETATM REVDAT 4 30-JAN-13 4BC2 1 JRNL REVDAT 3 19-DEC-12 4BC2 1 JRNL ATOM ANISOU HETATM REVDAT 2 05-DEC-12 4BC2 1 JRNL REVDAT 1 28-NOV-12 4BC2 0 JRNL AUTH R.D.BUNKER,E.M.M.BULLOCH,J.M.J.DICKSON,K.M.LOOMES,E.N.BAKER JRNL TITL STRUCTURE AND FUNCTION OF HUMAN XYLULOKINASE, AN ENZYME WITH JRNL TITL 2 IMPORTANT ROLES IN CARBOHYDRATE METABOLISM JRNL REF J.BIOL.CHEM. V. 288 1643 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23179721 JRNL DOI 10.1074/JBC.M112.427997 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 128989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6465 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 7629 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2489 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7238 REMARK 3 BIN R VALUE (WORKING SET) : 0.2484 REMARK 3 BIN FREE R VALUE : 0.2581 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.13 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 391 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 732 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75590 REMARK 3 B22 (A**2) : -2.75590 REMARK 3 B33 (A**2) : 5.51180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.264 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.133 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.119 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.221 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 24078 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 43346 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 6574 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 284 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 3735 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 24078 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1607 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 7 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 26871 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -4.1411 9.7576 -3.5067 REMARK 3 T TENSOR REMARK 3 T11: -0.1414 T22: 0.0776 REMARK 3 T33: -0.0956 T12: -0.0124 REMARK 3 T13: 0.0078 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.6162 L22: 0.7593 REMARK 3 L33: 1.2120 L12: -0.0814 REMARK 3 L13: 0.2468 L23: -0.4399 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: -0.0796 S13: 0.0385 REMARK 3 S21: -0.0177 S22: -0.0589 S23: 0.0815 REMARK 3 S31: 0.0361 S32: -0.0247 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 47.0048 20.2901 6.7385 REMARK 3 T TENSOR REMARK 3 T11: -0.1864 T22: 0.0767 REMARK 3 T33: -0.1042 T12: 0.0569 REMARK 3 T13: 0.0259 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 0.5181 L22: 0.7423 REMARK 3 L33: 1.5927 L12: 0.0132 REMARK 3 L13: -0.0252 L23: 0.0775 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.0327 S13: -0.0600 REMARK 3 S21: -0.0095 S22: 0.0453 S23: -0.0230 REMARK 3 S31: 0.0291 S32: 0.1044 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 11.9233 56.4325 1.8399 REMARK 3 T TENSOR REMARK 3 T11: -0.0389 T22: -0.1121 REMARK 3 T33: -0.1159 T12: 0.1091 REMARK 3 T13: 0.0642 T23: 0.0761 REMARK 3 L TENSOR REMARK 3 L11: 1.5785 L22: 0.7946 REMARK 3 L33: 1.4388 L12: -0.0805 REMARK 3 L13: -0.5933 L23: 0.4117 REMARK 3 S TENSOR REMARK 3 S11: 0.2524 S12: 0.2120 S13: 0.3959 REMARK 3 S21: 0.0185 S22: -0.1380 S23: -0.1487 REMARK 3 S31: -0.1523 S32: -0.1923 S33: -0.1144 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4BC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131532 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 36.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HUMAN D-XYLULOSE DETERMINED BY TWO-ENERGY SELENIUM REMARK 200 MAD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES/KOH PH 5.9, 15% (W/V) PEG REMARK 280 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.26000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.13000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 HIS A 4 REMARK 465 GLY A 533 REMARK 465 PRO A 534 REMARK 465 PRO A 535 REMARK 465 GLU A 536 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 HIS B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 533 REMARK 465 PRO B 534 REMARK 465 PRO B 535 REMARK 465 GLU B 536 REMARK 465 GLY C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 HIS C 4 REMARK 465 ALA C 5 REMARK 465 GLY C 533 REMARK 465 PRO C 534 REMARK 465 PRO C 535 REMARK 465 GLU C 536 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 LYS A 494 CG CD CE NZ REMARK 470 GLN A 511 CG CD OE1 NE2 REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 ARG A 532 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 GLN B 49 CG CD OE1 NE2 REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 435 CG CD CE NZ REMARK 470 GLN B 511 CG CD OE1 NE2 REMARK 470 GLU B 514 CG CD OE1 OE2 REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 ARG B 532 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 56 CG CD CE NZ REMARK 470 GLN C 123 CG CD OE1 NE2 REMARK 470 GLU C 311 CG CD OE1 OE2 REMARK 470 LYS C 398 CG CD CE NZ REMARK 470 LYS C 435 CG CD CE NZ REMARK 470 GLN C 511 CG CD OE1 NE2 REMARK 470 GLU C 514 CG CD OE1 OE2 REMARK 470 LYS C 522 CG CD CE NZ REMARK 470 ARG C 532 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS C 252 O HOH C 2118 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 99 -37.43 73.26 REMARK 500 SER A 246 165.36 74.74 REMARK 500 ASP A 326 88.79 -162.15 REMARK 500 ARG A 353 56.40 -69.44 REMARK 500 HIS B 99 -38.37 73.10 REMARK 500 SER B 246 165.52 75.45 REMARK 500 ASP B 326 88.31 -161.61 REMARK 500 HIS C 99 -36.93 72.58 REMARK 500 SER C 246 164.49 75.12 REMARK 500 ASP C 326 88.28 -162.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2053 DISTANCE = 6.01 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ADP A 1533 REMARK 610 ADP B 1533 REMARK 610 ADP C 1533 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XUL B 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XUL C 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XUL A 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1535 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B6T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE WITH BOUND 5 -DEOXY-5- REMARK 900 FLUORO-D-XYLULOSE REMARK 900 RELATED ID: 4B6Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE WITH BOUND D -XYLULOSE REMARK 900 RELATED ID: 4BC3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE REMARK 900 RELATED ID: 4BC4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH D-XYLULOSE REMARK 900 RELATED ID: 4BC5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH INHIBITOR REMARK 900 5-DEOXY-5-FLUORO-D-XYLULOSE DBREF 4BC2 A 1 536 UNP O75191 XYLB_HUMAN 1 536 DBREF 4BC2 B 1 536 UNP O75191 XYLB_HUMAN 1 536 DBREF 4BC2 C 1 536 UNP O75191 XYLB_HUMAN 1 536 SEQADV 4BC2 GLY A -1 UNP O75191 EXPRESSION TAG SEQADV 4BC2 ALA A 0 UNP O75191 EXPRESSION TAG SEQADV 4BC2 GLY B -1 UNP O75191 EXPRESSION TAG SEQADV 4BC2 ALA B 0 UNP O75191 EXPRESSION TAG SEQADV 4BC2 GLY C -1 UNP O75191 EXPRESSION TAG SEQADV 4BC2 ALA C 0 UNP O75191 EXPRESSION TAG SEQRES 1 A 538 GLY ALA MSE ALA GLU HIS ALA PRO ARG ARG CYS CYS LEU SEQRES 2 A 538 GLY TRP ASP PHE SER THR GLN GLN VAL LYS VAL VAL ALA SEQRES 3 A 538 VAL ASP ALA GLU LEU ASN VAL PHE TYR GLU GLU SER VAL SEQRES 4 A 538 HIS PHE ASP ARG ASP LEU PRO GLU PHE GLY THR GLN GLY SEQRES 5 A 538 GLY VAL HIS VAL HIS LYS ASP GLY LEU THR VAL THR SER SEQRES 6 A 538 PRO VAL LEU MSE TRP VAL GLN ALA LEU ASP ILE ILE LEU SEQRES 7 A 538 GLU LYS MSE LYS ALA SER GLY PHE ASP PHE SER GLN VAL SEQRES 8 A 538 LEU ALA LEU SER GLY ALA GLY GLN GLN HIS GLY SER ILE SEQRES 9 A 538 TYR TRP LYS ALA GLY ALA GLN GLN ALA LEU THR SER LEU SEQRES 10 A 538 SER PRO ASP LEU ARG LEU HIS GLN GLN LEU GLN ASP CYS SEQRES 11 A 538 PHE SER ILE SER ASP CYS PRO VAL TRP MSE ASP SER SER SEQRES 12 A 538 THR THR ALA GLN CYS ARG GLN LEU GLU ALA ALA VAL GLY SEQRES 13 A 538 GLY ALA GLN ALA LEU SER CYS LEU THR GLY SER ARG ALA SEQRES 14 A 538 TYR GLU ARG PHE THR GLY ASN GLN ILE ALA LYS ILE TYR SEQRES 15 A 538 GLN GLN ASN PRO GLU ALA TYR SER HIS THR GLU ARG ILE SEQRES 16 A 538 SER LEU VAL SER SER PHE ALA ALA SER LEU PHE LEU GLY SEQRES 17 A 538 SER TYR SER PRO ILE ASP TYR SER ASP GLY SER GLY MSE SEQRES 18 A 538 ASN LEU LEU GLN ILE GLN ASP LYS VAL TRP SER GLN ALA SEQRES 19 A 538 CYS LEU GLY ALA CYS ALA PRO HIS LEU GLU GLU LYS LEU SEQRES 20 A 538 SER PRO PRO VAL PRO SER CYS SER VAL VAL GLY ALA ILE SEQRES 21 A 538 SER SER TYR TYR VAL GLN ARG TYR GLY PHE PRO PRO GLY SEQRES 22 A 538 CYS LYS VAL VAL ALA PHE THR GLY ASP ASN PRO ALA SER SEQRES 23 A 538 LEU ALA GLY MSE ARG LEU GLU GLU GLY ASP ILE ALA VAL SEQRES 24 A 538 SER LEU GLY THR SER ASP THR LEU PHE LEU TRP LEU GLN SEQRES 25 A 538 GLU PRO MSE PRO ALA LEU GLU GLY HIS ILE PHE CYS ASN SEQRES 26 A 538 PRO VAL ASP SER GLN HIS TYR MSE ALA LEU LEU CYS PHE SEQRES 27 A 538 LYS ASN GLY SER LEU MSE ARG GLU LYS ILE ARG ASN GLU SEQRES 28 A 538 SER VAL SER ARG SER TRP SER ASP PHE SER LYS ALA LEU SEQRES 29 A 538 GLN SER THR GLU MSE GLY ASN GLY GLY ASN LEU GLY PHE SEQRES 30 A 538 TYR PHE ASP VAL MSE GLU ILE THR PRO GLU ILE ILE GLY SEQRES 31 A 538 ARG HIS ARG PHE ASN THR GLU ASN HIS LYS VAL ALA ALA SEQRES 32 A 538 PHE PRO GLY ASP VAL GLU VAL ARG ALA LEU ILE GLU GLY SEQRES 33 A 538 GLN PHE MSE ALA LYS ARG ILE HIS ALA GLU GLY LEU GLY SEQRES 34 A 538 TYR ARG VAL MSE SER LYS THR LYS ILE LEU ALA THR GLY SEQRES 35 A 538 GLY ALA SER HIS ASN ARG GLU ILE LEU GLN VAL LEU ALA SEQRES 36 A 538 ASP VAL PHE ASP ALA PRO VAL TYR VAL ILE ASP THR ALA SEQRES 37 A 538 ASN SER ALA CYS VAL GLY SER ALA TYR ARG ALA PHE HIS SEQRES 38 A 538 GLY LEU ALA GLY GLY THR ASP VAL PRO PHE SER GLU VAL SEQRES 39 A 538 VAL LYS LEU ALA PRO ASN PRO ARG LEU ALA ALA THR PRO SEQRES 40 A 538 SER PRO GLY ALA SER GLN VAL TYR GLU ALA LEU LEU PRO SEQRES 41 A 538 GLN TYR ALA LYS LEU GLU GLN ARG ILE LEU SER GLN THR SEQRES 42 A 538 ARG GLY PRO PRO GLU SEQRES 1 B 538 GLY ALA MSE ALA GLU HIS ALA PRO ARG ARG CYS CYS LEU SEQRES 2 B 538 GLY TRP ASP PHE SER THR GLN GLN VAL LYS VAL VAL ALA SEQRES 3 B 538 VAL ASP ALA GLU LEU ASN VAL PHE TYR GLU GLU SER VAL SEQRES 4 B 538 HIS PHE ASP ARG ASP LEU PRO GLU PHE GLY THR GLN GLY SEQRES 5 B 538 GLY VAL HIS VAL HIS LYS ASP GLY LEU THR VAL THR SER SEQRES 6 B 538 PRO VAL LEU MSE TRP VAL GLN ALA LEU ASP ILE ILE LEU SEQRES 7 B 538 GLU LYS MSE LYS ALA SER GLY PHE ASP PHE SER GLN VAL SEQRES 8 B 538 LEU ALA LEU SER GLY ALA GLY GLN GLN HIS GLY SER ILE SEQRES 9 B 538 TYR TRP LYS ALA GLY ALA GLN GLN ALA LEU THR SER LEU SEQRES 10 B 538 SER PRO ASP LEU ARG LEU HIS GLN GLN LEU GLN ASP CYS SEQRES 11 B 538 PHE SER ILE SER ASP CYS PRO VAL TRP MSE ASP SER SER SEQRES 12 B 538 THR THR ALA GLN CYS ARG GLN LEU GLU ALA ALA VAL GLY SEQRES 13 B 538 GLY ALA GLN ALA LEU SER CYS LEU THR GLY SER ARG ALA SEQRES 14 B 538 TYR GLU ARG PHE THR GLY ASN GLN ILE ALA LYS ILE TYR SEQRES 15 B 538 GLN GLN ASN PRO GLU ALA TYR SER HIS THR GLU ARG ILE SEQRES 16 B 538 SER LEU VAL SER SER PHE ALA ALA SER LEU PHE LEU GLY SEQRES 17 B 538 SER TYR SER PRO ILE ASP TYR SER ASP GLY SER GLY MSE SEQRES 18 B 538 ASN LEU LEU GLN ILE GLN ASP LYS VAL TRP SER GLN ALA SEQRES 19 B 538 CYS LEU GLY ALA CYS ALA PRO HIS LEU GLU GLU LYS LEU SEQRES 20 B 538 SER PRO PRO VAL PRO SER CYS SER VAL VAL GLY ALA ILE SEQRES 21 B 538 SER SER TYR TYR VAL GLN ARG TYR GLY PHE PRO PRO GLY SEQRES 22 B 538 CYS LYS VAL VAL ALA PHE THR GLY ASP ASN PRO ALA SER SEQRES 23 B 538 LEU ALA GLY MSE ARG LEU GLU GLU GLY ASP ILE ALA VAL SEQRES 24 B 538 SER LEU GLY THR SER ASP THR LEU PHE LEU TRP LEU GLN SEQRES 25 B 538 GLU PRO MSE PRO ALA LEU GLU GLY HIS ILE PHE CYS ASN SEQRES 26 B 538 PRO VAL ASP SER GLN HIS TYR MSE ALA LEU LEU CYS PHE SEQRES 27 B 538 LYS ASN GLY SER LEU MSE ARG GLU LYS ILE ARG ASN GLU SEQRES 28 B 538 SER VAL SER ARG SER TRP SER ASP PHE SER LYS ALA LEU SEQRES 29 B 538 GLN SER THR GLU MSE GLY ASN GLY GLY ASN LEU GLY PHE SEQRES 30 B 538 TYR PHE ASP VAL MSE GLU ILE THR PRO GLU ILE ILE GLY SEQRES 31 B 538 ARG HIS ARG PHE ASN THR GLU ASN HIS LYS VAL ALA ALA SEQRES 32 B 538 PHE PRO GLY ASP VAL GLU VAL ARG ALA LEU ILE GLU GLY SEQRES 33 B 538 GLN PHE MSE ALA LYS ARG ILE HIS ALA GLU GLY LEU GLY SEQRES 34 B 538 TYR ARG VAL MSE SER LYS THR LYS ILE LEU ALA THR GLY SEQRES 35 B 538 GLY ALA SER HIS ASN ARG GLU ILE LEU GLN VAL LEU ALA SEQRES 36 B 538 ASP VAL PHE ASP ALA PRO VAL TYR VAL ILE ASP THR ALA SEQRES 37 B 538 ASN SER ALA CYS VAL GLY SER ALA TYR ARG ALA PHE HIS SEQRES 38 B 538 GLY LEU ALA GLY GLY THR ASP VAL PRO PHE SER GLU VAL SEQRES 39 B 538 VAL LYS LEU ALA PRO ASN PRO ARG LEU ALA ALA THR PRO SEQRES 40 B 538 SER PRO GLY ALA SER GLN VAL TYR GLU ALA LEU LEU PRO SEQRES 41 B 538 GLN TYR ALA LYS LEU GLU GLN ARG ILE LEU SER GLN THR SEQRES 42 B 538 ARG GLY PRO PRO GLU SEQRES 1 C 538 GLY ALA MSE ALA GLU HIS ALA PRO ARG ARG CYS CYS LEU SEQRES 2 C 538 GLY TRP ASP PHE SER THR GLN GLN VAL LYS VAL VAL ALA SEQRES 3 C 538 VAL ASP ALA GLU LEU ASN VAL PHE TYR GLU GLU SER VAL SEQRES 4 C 538 HIS PHE ASP ARG ASP LEU PRO GLU PHE GLY THR GLN GLY SEQRES 5 C 538 GLY VAL HIS VAL HIS LYS ASP GLY LEU THR VAL THR SER SEQRES 6 C 538 PRO VAL LEU MSE TRP VAL GLN ALA LEU ASP ILE ILE LEU SEQRES 7 C 538 GLU LYS MSE LYS ALA SER GLY PHE ASP PHE SER GLN VAL SEQRES 8 C 538 LEU ALA LEU SER GLY ALA GLY GLN GLN HIS GLY SER ILE SEQRES 9 C 538 TYR TRP LYS ALA GLY ALA GLN GLN ALA LEU THR SER LEU SEQRES 10 C 538 SER PRO ASP LEU ARG LEU HIS GLN GLN LEU GLN ASP CYS SEQRES 11 C 538 PHE SER ILE SER ASP CYS PRO VAL TRP MSE ASP SER SER SEQRES 12 C 538 THR THR ALA GLN CYS ARG GLN LEU GLU ALA ALA VAL GLY SEQRES 13 C 538 GLY ALA GLN ALA LEU SER CYS LEU THR GLY SER ARG ALA SEQRES 14 C 538 TYR GLU ARG PHE THR GLY ASN GLN ILE ALA LYS ILE TYR SEQRES 15 C 538 GLN GLN ASN PRO GLU ALA TYR SER HIS THR GLU ARG ILE SEQRES 16 C 538 SER LEU VAL SER SER PHE ALA ALA SER LEU PHE LEU GLY SEQRES 17 C 538 SER TYR SER PRO ILE ASP TYR SER ASP GLY SER GLY MSE SEQRES 18 C 538 ASN LEU LEU GLN ILE GLN ASP LYS VAL TRP SER GLN ALA SEQRES 19 C 538 CYS LEU GLY ALA CYS ALA PRO HIS LEU GLU GLU LYS LEU SEQRES 20 C 538 SER PRO PRO VAL PRO SER CYS SER VAL VAL GLY ALA ILE SEQRES 21 C 538 SER SER TYR TYR VAL GLN ARG TYR GLY PHE PRO PRO GLY SEQRES 22 C 538 CYS LYS VAL VAL ALA PHE THR GLY ASP ASN PRO ALA SER SEQRES 23 C 538 LEU ALA GLY MSE ARG LEU GLU GLU GLY ASP ILE ALA VAL SEQRES 24 C 538 SER LEU GLY THR SER ASP THR LEU PHE LEU TRP LEU GLN SEQRES 25 C 538 GLU PRO MSE PRO ALA LEU GLU GLY HIS ILE PHE CYS ASN SEQRES 26 C 538 PRO VAL ASP SER GLN HIS TYR MSE ALA LEU LEU CYS PHE SEQRES 27 C 538 LYS ASN GLY SER LEU MSE ARG GLU LYS ILE ARG ASN GLU SEQRES 28 C 538 SER VAL SER ARG SER TRP SER ASP PHE SER LYS ALA LEU SEQRES 29 C 538 GLN SER THR GLU MSE GLY ASN GLY GLY ASN LEU GLY PHE SEQRES 30 C 538 TYR PHE ASP VAL MSE GLU ILE THR PRO GLU ILE ILE GLY SEQRES 31 C 538 ARG HIS ARG PHE ASN THR GLU ASN HIS LYS VAL ALA ALA SEQRES 32 C 538 PHE PRO GLY ASP VAL GLU VAL ARG ALA LEU ILE GLU GLY SEQRES 33 C 538 GLN PHE MSE ALA LYS ARG ILE HIS ALA GLU GLY LEU GLY SEQRES 34 C 538 TYR ARG VAL MSE SER LYS THR LYS ILE LEU ALA THR GLY SEQRES 35 C 538 GLY ALA SER HIS ASN ARG GLU ILE LEU GLN VAL LEU ALA SEQRES 36 C 538 ASP VAL PHE ASP ALA PRO VAL TYR VAL ILE ASP THR ALA SEQRES 37 C 538 ASN SER ALA CYS VAL GLY SER ALA TYR ARG ALA PHE HIS SEQRES 38 C 538 GLY LEU ALA GLY GLY THR ASP VAL PRO PHE SER GLU VAL SEQRES 39 C 538 VAL LYS LEU ALA PRO ASN PRO ARG LEU ALA ALA THR PRO SEQRES 40 C 538 SER PRO GLY ALA SER GLN VAL TYR GLU ALA LEU LEU PRO SEQRES 41 C 538 GLN TYR ALA LYS LEU GLU GLN ARG ILE LEU SER GLN THR SEQRES 42 C 538 ARG GLY PRO PRO GLU MODRES 4BC2 MSE A 67 MET SELENOMETHIONINE MODRES 4BC2 MSE A 79 MET SELENOMETHIONINE MODRES 4BC2 MSE A 138 MET SELENOMETHIONINE MODRES 4BC2 MSE A 219 MET SELENOMETHIONINE MODRES 4BC2 MSE A 288 MET SELENOMETHIONINE MODRES 4BC2 MSE A 313 MET SELENOMETHIONINE MODRES 4BC2 MSE A 331 MET SELENOMETHIONINE MODRES 4BC2 MSE A 342 MET SELENOMETHIONINE MODRES 4BC2 MSE A 367 MET SELENOMETHIONINE MODRES 4BC2 MSE A 380 MET SELENOMETHIONINE MODRES 4BC2 MSE A 417 MET SELENOMETHIONINE MODRES 4BC2 MSE A 431 MET SELENOMETHIONINE MODRES 4BC2 MSE B 67 MET SELENOMETHIONINE MODRES 4BC2 MSE B 79 MET SELENOMETHIONINE MODRES 4BC2 MSE B 138 MET SELENOMETHIONINE MODRES 4BC2 MSE B 219 MET SELENOMETHIONINE MODRES 4BC2 MSE B 288 MET SELENOMETHIONINE MODRES 4BC2 MSE B 313 MET SELENOMETHIONINE MODRES 4BC2 MSE B 331 MET SELENOMETHIONINE MODRES 4BC2 MSE B 342 MET SELENOMETHIONINE MODRES 4BC2 MSE B 367 MET SELENOMETHIONINE MODRES 4BC2 MSE B 380 MET SELENOMETHIONINE MODRES 4BC2 MSE B 417 MET SELENOMETHIONINE MODRES 4BC2 MSE B 431 MET SELENOMETHIONINE MODRES 4BC2 MSE C 67 MET SELENOMETHIONINE MODRES 4BC2 MSE C 79 MET SELENOMETHIONINE MODRES 4BC2 MSE C 138 MET SELENOMETHIONINE MODRES 4BC2 MSE C 219 MET SELENOMETHIONINE MODRES 4BC2 MSE C 288 MET SELENOMETHIONINE MODRES 4BC2 MSE C 313 MET SELENOMETHIONINE MODRES 4BC2 MSE C 331 MET SELENOMETHIONINE MODRES 4BC2 MSE C 342 MET SELENOMETHIONINE MODRES 4BC2 MSE C 367 MET SELENOMETHIONINE MODRES 4BC2 MSE C 380 MET SELENOMETHIONINE MODRES 4BC2 MSE C 417 MET SELENOMETHIONINE MODRES 4BC2 MSE C 431 MET SELENOMETHIONINE HET MSE A 67 17 HET MSE A 79 17 HET MSE A 138 17 HET MSE A 219 17 HET MSE A 288 17 HET MSE A 313 34 HET MSE A 331 17 HET MSE A 342 17 HET MSE A 367 17 HET MSE A 380 17 HET MSE A 417 17 HET MSE A 431 17 HET MSE B 67 17 HET MSE B 79 17 HET MSE B 138 17 HET MSE B 219 17 HET MSE B 288 17 HET MSE B 313 17 HET MSE B 331 17 HET MSE B 342 17 HET MSE B 367 17 HET MSE B 380 17 HET MSE B 417 17 HET MSE B 431 17 HET MSE C 67 17 HET MSE C 79 17 HET MSE C 138 17 HET MSE C 219 17 HET MSE C 288 17 HET MSE C 313 17 HET MSE C 331 17 HET MSE C 342 17 HET MSE C 367 17 HET MSE C 380 17 HET MSE C 417 17 HET MSE C 431 17 HET ADP A1533 31 HET XUL A1534 20 HET ADP B1533 31 HET XUL B1534 20 HET EDO B1535 10 HET ADP C1533 36 HET XUL C1534 20 HETNAM MSE SELENOMETHIONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM XUL D-XYLULOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 36(C5 H11 N O2 SE) FORMUL 4 ADP 3(C10 H15 N5 O10 P2) FORMUL 5 XUL 3(C5 H10 O5) FORMUL 8 EDO C2 H6 O2 FORMUL 11 HOH *732(H2 O) HELIX 1 1 PHE A 39 LEU A 43 1 5 HELIX 2 2 PRO A 44 GLY A 47 5 4 HELIX 3 3 VAL A 65 SER A 82 1 18 HELIX 4 4 ASP A 85 SER A 87 5 3 HELIX 5 5 GLY A 107 SER A 114 1 8 HELIX 6 6 ARG A 120 LEU A 125 1 6 HELIX 7 7 THR A 142 VAL A 153 1 12 HELIX 8 8 GLY A 155 GLY A 164 1 10 HELIX 9 9 PHE A 171 ASN A 183 1 13 HELIX 10 10 ASN A 183 HIS A 189 1 7 HELIX 11 11 VAL A 196 GLY A 206 1 11 HELIX 12 12 SER A 214 GLY A 218 5 5 HELIX 13 13 SER A 230 ALA A 238 1 9 HELIX 14 14 HIS A 240 SER A 246 1 7 HELIX 15 15 SER A 259 GLY A 267 1 9 HELIX 16 16 ASP A 280 MSE A 288 1 9 HELIX 17 17 GLY A 339 VAL A 351 1 13 HELIX 18 18 SER A 354 SER A 364 1 11 HELIX 19 19 GLY A 368 ASN A 372 5 5 HELIX 20 20 PRO A 403 LEU A 426 1 24 HELIX 21 21 ALA A 442 HIS A 444 5 3 HELIX 22 22 ASN A 445 ASP A 457 1 13 HELIX 23 23 ASN A 467 GLY A 483 1 17 HELIX 24 24 GLY A 484 VAL A 487 5 4 HELIX 25 25 PRO A 488 VAL A 493 1 6 HELIX 26 26 LYS A 494 ALA A 496 5 3 HELIX 27 27 GLY A 508 ARG A 532 1 25 HELIX 28 28 PHE B 39 LEU B 43 1 5 HELIX 29 29 PRO B 44 GLY B 47 5 4 HELIX 30 30 VAL B 65 SER B 82 1 18 HELIX 31 31 ASP B 85 SER B 87 5 3 HELIX 32 32 GLY B 107 SER B 114 1 8 HELIX 33 33 ARG B 120 GLN B 126 1 7 HELIX 34 34 THR B 142 VAL B 153 1 12 HELIX 35 35 GLY B 155 GLY B 164 1 10 HELIX 36 36 PHE B 171 ASN B 183 1 13 HELIX 37 37 ASN B 183 HIS B 189 1 7 HELIX 38 38 VAL B 196 GLY B 206 1 11 HELIX 39 39 SER B 214 GLY B 218 5 5 HELIX 40 40 SER B 230 ALA B 238 1 9 HELIX 41 41 HIS B 240 SER B 246 1 7 HELIX 42 42 SER B 259 GLY B 267 1 9 HELIX 43 43 ASP B 280 MSE B 288 1 9 HELIX 44 44 GLY B 339 VAL B 351 1 13 HELIX 45 45 SER B 354 SER B 364 1 11 HELIX 46 46 GLY B 368 ASN B 372 5 5 HELIX 47 47 PRO B 403 LEU B 426 1 24 HELIX 48 48 ALA B 442 HIS B 444 5 3 HELIX 49 49 ASN B 445 ASP B 457 1 13 HELIX 50 50 ASN B 467 GLY B 483 1 17 HELIX 51 51 GLY B 484 VAL B 487 5 4 HELIX 52 52 PRO B 488 VAL B 493 1 6 HELIX 53 53 LYS B 494 ALA B 496 5 3 HELIX 54 54 GLY B 508 ARG B 532 1 25 HELIX 55 55 PHE C 39 LEU C 43 1 5 HELIX 56 56 PRO C 44 GLY C 47 5 4 HELIX 57 57 VAL C 65 SER C 82 1 18 HELIX 58 58 ASP C 85 SER C 87 5 3 HELIX 59 59 GLY C 107 SER C 114 1 8 HELIX 60 60 ARG C 120 LEU C 125 1 6 HELIX 61 61 THR C 142 VAL C 153 1 12 HELIX 62 62 GLY C 155 GLY C 164 1 10 HELIX 63 63 PHE C 171 ASN C 183 1 13 HELIX 64 64 ASN C 183 HIS C 189 1 7 HELIX 65 65 VAL C 196 GLY C 206 1 11 HELIX 66 66 SER C 214 GLY C 218 5 5 HELIX 67 67 SER C 230 ALA C 238 1 9 HELIX 68 68 HIS C 240 SER C 246 1 7 HELIX 69 69 SER C 259 GLY C 267 1 9 HELIX 70 70 ASP C 280 MSE C 288 1 9 HELIX 71 71 GLY C 339 VAL C 351 1 13 HELIX 72 72 SER C 354 SER C 364 1 11 HELIX 73 73 GLY C 368 ASN C 372 5 5 HELIX 74 74 PRO C 403 LEU C 426 1 24 HELIX 75 75 ALA C 442 HIS C 444 5 3 HELIX 76 76 ASN C 445 ASP C 457 1 13 HELIX 77 77 ASN C 467 ALA C 482 1 16 HELIX 78 78 GLY C 483 VAL C 487 5 5 HELIX 79 79 PRO C 488 VAL C 493 1 6 HELIX 80 80 GLY C 508 ARG C 532 1 25 SHEET 1 AA 5 VAL A 31 HIS A 38 0 SHEET 2 AA 5 GLN A 19 ASP A 26 -1 O VAL A 20 N VAL A 37 SHEET 3 AA 5 CYS A 9 PHE A 15 -1 O CYS A 10 N VAL A 25 SHEET 4 AA 5 VAL A 89 GLY A 96 1 N LEU A 90 O CYS A 9 SHEET 5 AA 5 THR A 278 GLY A 279 1 O THR A 278 N GLY A 96 SHEET 1 AB 6 VAL A 31 HIS A 38 0 SHEET 2 AB 6 GLN A 19 ASP A 26 -1 O VAL A 20 N VAL A 37 SHEET 3 AB 6 CYS A 9 PHE A 15 -1 O CYS A 10 N VAL A 25 SHEET 4 AB 6 VAL A 89 GLY A 96 1 N LEU A 90 O CYS A 9 SHEET 5 AB 6 LYS A 273 VAL A 275 1 O LYS A 273 N LEU A 92 SHEET 6 AB 6 VAL A 254 ALA A 257 -1 N VAL A 255 O VAL A 274 SHEET 1 AC 2 THR A 278 GLY A 279 0 SHEET 2 AC 2 VAL A 89 GLY A 96 1 O GLY A 94 N THR A 278 SHEET 1 AD 3 HIS A 53 VAL A 54 0 SHEET 2 AD 3 VAL A 61 PRO A 64 -1 O THR A 62 N HIS A 53 SHEET 3 AD 3 ASP A 133 PRO A 135 -1 O CYS A 134 N SER A 63 SHEET 1 AE 2 SER A 101 LYS A 105 0 SHEET 2 AE 2 THR A 190 LEU A 195 -1 N GLU A 191 O TRP A 104 SHEET 1 AF 2 LEU A 222 GLN A 223 0 SHEET 2 AF 2 VAL A 228 TRP A 229 -1 O VAL A 228 N GLN A 223 SHEET 1 AG 7 HIS A 319 CYS A 322 0 SHEET 2 AG 7 TYR A 330 PHE A 336 -1 O MSE A 331 N PHE A 321 SHEET 3 AG 7 ASP A 303 LEU A 309 -1 O ASP A 303 N PHE A 336 SHEET 4 AG 7 ILE A 295 LEU A 299 -1 O ALA A 296 N PHE A 306 SHEET 5 AG 7 ILE A 436 GLY A 440 1 O LEU A 437 N VAL A 297 SHEET 6 AG 7 VAL A 460 VAL A 462 1 O TYR A 461 N ALA A 438 SHEET 7 AG 7 ARG A 500 ALA A 503 -1 O ARG A 500 N VAL A 462 SHEET 1 AH 3 LEU A 373 PHE A 377 0 SHEET 2 AH 3 GLY A 388 PHE A 392 -1 O GLY A 388 N PHE A 377 SHEET 3 AH 3 LYS A 398 VAL A 399 -1 O VAL A 399 N ARG A 391 SHEET 1 BA 5 VAL B 31 HIS B 38 0 SHEET 2 BA 5 GLN B 19 ASP B 26 -1 O VAL B 20 N VAL B 37 SHEET 3 BA 5 CYS B 9 PHE B 15 -1 O CYS B 10 N VAL B 25 SHEET 4 BA 5 VAL B 89 GLY B 96 1 N LEU B 90 O CYS B 9 SHEET 5 BA 5 THR B 278 GLY B 279 1 O THR B 278 N GLY B 96 SHEET 1 BB 6 VAL B 31 HIS B 38 0 SHEET 2 BB 6 GLN B 19 ASP B 26 -1 O VAL B 20 N VAL B 37 SHEET 3 BB 6 CYS B 9 PHE B 15 -1 O CYS B 10 N VAL B 25 SHEET 4 BB 6 VAL B 89 GLY B 96 1 N LEU B 90 O CYS B 9 SHEET 5 BB 6 LYS B 273 VAL B 275 1 O LYS B 273 N LEU B 92 SHEET 6 BB 6 VAL B 254 ALA B 257 -1 N VAL B 255 O VAL B 274 SHEET 1 BC 2 THR B 278 GLY B 279 0 SHEET 2 BC 2 VAL B 89 GLY B 96 1 O GLY B 94 N THR B 278 SHEET 1 BD 3 HIS B 53 VAL B 54 0 SHEET 2 BD 3 VAL B 61 PRO B 64 -1 O THR B 62 N HIS B 53 SHEET 3 BD 3 ASP B 133 PRO B 135 -1 O CYS B 134 N SER B 63 SHEET 1 BE 2 SER B 101 LYS B 105 0 SHEET 2 BE 2 THR B 190 LEU B 195 -1 N GLU B 191 O TRP B 104 SHEET 1 BF 2 LEU B 222 GLN B 223 0 SHEET 2 BF 2 VAL B 228 TRP B 229 -1 O VAL B 228 N GLN B 223 SHEET 1 BG 7 HIS B 319 CYS B 322 0 SHEET 2 BG 7 TYR B 330 PHE B 336 -1 O MSE B 331 N PHE B 321 SHEET 3 BG 7 ASP B 303 LEU B 309 -1 O ASP B 303 N PHE B 336 SHEET 4 BG 7 ILE B 295 LEU B 299 -1 O ALA B 296 N PHE B 306 SHEET 5 BG 7 ILE B 436 GLY B 440 1 O LEU B 437 N VAL B 297 SHEET 6 BG 7 VAL B 460 VAL B 462 1 O TYR B 461 N ALA B 438 SHEET 7 BG 7 ARG B 500 ALA B 503 -1 O ARG B 500 N VAL B 462 SHEET 1 BH 3 LEU B 373 PHE B 377 0 SHEET 2 BH 3 GLY B 388 PHE B 392 -1 O GLY B 388 N PHE B 377 SHEET 3 BH 3 LYS B 398 VAL B 399 -1 O VAL B 399 N ARG B 391 SHEET 1 CA 5 VAL C 31 HIS C 38 0 SHEET 2 CA 5 GLN C 19 ASP C 26 -1 O VAL C 20 N VAL C 37 SHEET 3 CA 5 CYS C 9 PHE C 15 -1 O CYS C 10 N VAL C 25 SHEET 4 CA 5 VAL C 89 GLY C 96 1 N LEU C 90 O CYS C 9 SHEET 5 CA 5 THR C 278 GLY C 279 1 O THR C 278 N GLY C 96 SHEET 1 CB 6 VAL C 31 HIS C 38 0 SHEET 2 CB 6 GLN C 19 ASP C 26 -1 O VAL C 20 N VAL C 37 SHEET 3 CB 6 CYS C 9 PHE C 15 -1 O CYS C 10 N VAL C 25 SHEET 4 CB 6 VAL C 89 GLY C 96 1 N LEU C 90 O CYS C 9 SHEET 5 CB 6 LYS C 273 VAL C 275 1 O LYS C 273 N LEU C 92 SHEET 6 CB 6 VAL C 254 ALA C 257 -1 N VAL C 255 O VAL C 274 SHEET 1 CC 2 THR C 278 GLY C 279 0 SHEET 2 CC 2 VAL C 89 GLY C 96 1 O GLY C 94 N THR C 278 SHEET 1 CD 3 HIS C 53 VAL C 54 0 SHEET 2 CD 3 VAL C 61 PRO C 64 -1 O THR C 62 N HIS C 53 SHEET 3 CD 3 ASP C 133 PRO C 135 -1 O CYS C 134 N SER C 63 SHEET 1 CE 2 SER C 101 LYS C 105 0 SHEET 2 CE 2 THR C 190 LEU C 195 -1 N GLU C 191 O TRP C 104 SHEET 1 CF 2 LEU C 222 GLN C 223 0 SHEET 2 CF 2 VAL C 228 TRP C 229 -1 O VAL C 228 N GLN C 223 SHEET 1 CG 7 HIS C 319 CYS C 322 0 SHEET 2 CG 7 TYR C 330 PHE C 336 -1 O MSE C 331 N PHE C 321 SHEET 3 CG 7 ASP C 303 LEU C 309 -1 O ASP C 303 N PHE C 336 SHEET 4 CG 7 ILE C 295 LEU C 299 -1 O ALA C 296 N PHE C 306 SHEET 5 CG 7 ILE C 436 GLY C 440 1 O LEU C 437 N VAL C 297 SHEET 6 CG 7 VAL C 460 VAL C 462 1 O TYR C 461 N ALA C 438 SHEET 7 CG 7 ARG C 500 ALA C 503 -1 O ARG C 500 N VAL C 462 SHEET 1 CH 3 LEU C 373 PHE C 377 0 SHEET 2 CH 3 GLY C 388 PHE C 392 -1 O GLY C 388 N PHE C 377 SHEET 3 CH 3 LYS C 398 VAL C 399 -1 O VAL C 399 N ARG C 391 LINK N MSE A 67 C LEU A 66 1555 1555 1.34 LINK C MSE A 67 N TRP A 68 1555 1555 1.34 LINK N MSE A 79 C LYS A 78 1555 1555 1.35 LINK C MSE A 79 N LYS A 80 1555 1555 1.33 LINK N MSE A 138 C TRP A 137 1555 1555 1.33 LINK C MSE A 138 N ASP A 139 1555 1555 1.33 LINK N MSE A 219 C GLY A 218 1555 1555 1.35 LINK C MSE A 219 N ASN A 220 1555 1555 1.36 LINK N MSE A 288 C GLY A 287 1555 1555 1.33 LINK C MSE A 288 N ARG A 289 1555 1555 1.33 LINK N AMSE A 313 C PRO A 312 1555 1555 1.34 LINK C AMSE A 313 N PRO A 314 1555 1555 1.36 LINK N BMSE A 313 C PRO A 312 1555 1555 1.35 LINK C BMSE A 313 N PRO A 314 1555 1555 1.35 LINK N MSE A 331 C TYR A 330 1555 1555 1.30 LINK C MSE A 331 N ALA A 332 1555 1555 1.33 LINK N MSE A 342 C LEU A 341 1555 1555 1.34 LINK C MSE A 342 N ARG A 343 1555 1555 1.34 LINK N MSE A 367 C GLU A 366 1555 1555 1.35 LINK C MSE A 367 N GLY A 368 1555 1555 1.32 LINK N MSE A 380 C VAL A 379 1555 1555 1.33 LINK C MSE A 380 N GLU A 381 1555 1555 1.34 LINK N MSE A 417 C PHE A 416 1555 1555 1.33 LINK C MSE A 417 N ALA A 418 1555 1555 1.34 LINK N MSE A 431 C VAL A 430 1555 1555 1.32 LINK C MSE A 431 N SER A 432 1555 1555 1.32 LINK N MSE B 67 C LEU B 66 1555 1555 1.34 LINK C MSE B 67 N TRP B 68 1555 1555 1.34 LINK N MSE B 79 C LYS B 78 1555 1555 1.36 LINK C MSE B 79 N LYS B 80 1555 1555 1.33 LINK N MSE B 138 C TRP B 137 1555 1555 1.34 LINK C MSE B 138 N ASP B 139 1555 1555 1.34 LINK N MSE B 219 C GLY B 218 1555 1555 1.36 LINK C MSE B 219 N ASN B 220 1555 1555 1.36 LINK N MSE B 288 C GLY B 287 1555 1555 1.32 LINK C MSE B 288 N ARG B 289 1555 1555 1.33 LINK N MSE B 313 C PRO B 312 1555 1555 1.32 LINK C MSE B 313 N PRO B 314 1555 1555 1.35 LINK C MSE B 331 N ALA B 332 1555 1555 1.30 LINK N MSE B 331 C TYR B 330 1555 1555 1.30 LINK C MSE B 342 N ARG B 343 1555 1555 1.31 LINK N MSE B 342 C LEU B 341 1555 1555 1.32 LINK C MSE B 367 N GLY B 368 1555 1555 1.32 LINK N MSE B 367 C GLU B 366 1555 1555 1.34 LINK C MSE B 380 N GLU B 381 1555 1555 1.33 LINK N MSE B 380 C VAL B 379 1555 1555 1.33 LINK C MSE B 417 N ALA B 418 1555 1555 1.34 LINK N MSE B 417 C PHE B 416 1555 1555 1.33 LINK C MSE B 431 N SER B 432 1555 1555 1.33 LINK N MSE B 431 C VAL B 430 1555 1555 1.33 LINK C MSE C 67 N TRP C 68 1555 1555 1.35 LINK N MSE C 67 C LEU C 66 1555 1555 1.34 LINK C MSE C 79 N LYS C 80 1555 1555 1.33 LINK N MSE C 79 C LYS C 78 1555 1555 1.34 LINK C MSE C 138 N ASP C 139 1555 1555 1.34 LINK N MSE C 138 C TRP C 137 1555 1555 1.34 LINK C MSE C 219 N ASN C 220 1555 1555 1.37 LINK N MSE C 219 C GLY C 218 1555 1555 1.35 LINK C MSE C 288 N ARG C 289 1555 1555 1.35 LINK N MSE C 288 C GLY C 287 1555 1555 1.33 LINK C MSE C 313 N PRO C 314 1555 1555 1.36 LINK N MSE C 313 C PRO C 312 1555 1555 1.35 LINK C MSE C 331 N ALA C 332 1555 1555 1.31 LINK N MSE C 331 C TYR C 330 1555 1555 1.33 LINK C MSE C 342 N ARG C 343 1555 1555 1.33 LINK N MSE C 342 C LEU C 341 1555 1555 1.32 LINK C MSE C 367 N GLY C 368 1555 1555 1.32 LINK N MSE C 367 C GLU C 366 1555 1555 1.35 LINK C MSE C 380 N GLU C 381 1555 1555 1.33 LINK N MSE C 380 C VAL C 379 1555 1555 1.34 LINK C MSE C 417 N ALA C 418 1555 1555 1.34 LINK N MSE C 417 C PHE C 416 1555 1555 1.32 LINK C MSE C 431 N SER C 432 1555 1555 1.33 LINK N MSE C 431 C VAL C 430 1555 1555 1.33 CISPEP 1 THR A 383 PRO A 384 0 -6.83 CISPEP 2 THR B 383 PRO B 384 0 -6.46 CISPEP 3 THR C 383 PRO C 384 0 -6.58 SITE 1 AC1 8 SER B 340 TRP B 355 GLY B 441 ALA B 442 SITE 2 AC1 8 ASN B 445 HOH B2178 HOH B2180 HOH B2284 SITE 1 AC2 6 TRP A 355 GLY A 441 ASN A 445 HOH A2183 SITE 2 AC2 6 HOH A2184 HOH A2237 SITE 1 AC3 10 HOH A2040 LEU C 299 SER C 340 GLU C 344 SITE 2 AC3 10 TRP C 355 GLY C 441 ALA C 442 ASN C 445 SITE 3 AC3 10 HOH C2138 HOH C2151 SITE 1 AC4 8 GLN B 97 GLN B 98 HIS B 99 TRP B 137 SITE 2 AC4 8 ARG B 170 ASP B 280 ASN B 281 HOH B2015 SITE 1 AC5 8 GLN C 97 GLN C 98 HIS C 99 TRP C 137 SITE 2 AC5 8 ARG C 170 ASP C 280 ASN C 281 HOH C2011 SITE 1 AC6 8 GLN A 97 GLN A 98 HIS A 99 TRP A 137 SITE 2 AC6 8 ARG A 170 ASP A 280 ASN A 281 HOH A2009 SITE 1 AC7 6 SER B 251 CYS B 252 PRO B 324 VAL B 325 SITE 2 AC7 6 ASP B 326 SER B 327 CRYST1 102.160 102.160 159.390 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009789 0.005651 0.000000 0.00000 SCALE2 0.000000 0.011303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006274 0.00000